Sed0022823 (gene) Chayote v1

Overview
NameSed0022823
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG13: 1012391 .. 1015278 (+)
RNA-Seq ExpressionSed0022823
SyntenySed0022823
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAACCATCCTAATTAAAACTATTATTTTTCTTAATCCTTAATTTTTTTTTTTTATTCTTCTTCTTCTTCAAATTCATCTCTGTGTTTTTTTTTCTTTTCTTATAAACCCTAGCTATGGCGTCGCACGTGCAATTCGGCGAAACGGGGCCGTTTTGGACGGAGGAGAAGCACGTGCTGTTCTTGAATTCTATGGAAGCTTCTTTCGTCAGATCAATGCTCCAAAATCGCCGCCGTCTACGGCTGGACCGCCTCCTTCCGGACACCGCCGACTCAACCTTAGATTCATCTCTTAAGGACACCAAATTAATCCATCCAATCTCCGGTCAGTTTAAATCTTCCGTTTTAATGCCACTAACTTTTAAATTAGAGTTAAATATCAATTTTTAAAATCAATAATTGATTTAAATTAAATCTAGAGATTATCAATTCAATTGGATAGATACTTTTAAGCTTTGTTTGTTACAATAATACTATCATTAAACAAAAAAGCTTTATTTGGGTCAATATTAGGGCTAAGGATAGATGTTTTTTTTTTTTCCTTCTATTTTTATTATTATATATTTTGAAGGATCTCTTGATCGAGATATATATATATATATATATATATATATATATATATATTTTAATTTGACATCAAGAATAGGGATGGATCTCAAAATTTTAATTGGAGGGTTGATTCAAAAATTATTTGAAAGATTGACTTCTATACATAAAAAAAATTATCACCTATATATAAACTATAAATTTTAATATTTGGGGGTCTAACAAATATTATTGGAATATAAGTACTACATACCATAAATAACCAATTACAAATTTTGGAATGGTTATTGATCTTTTTAATTAGATGCATGGGTCAACAAATTTGATCATGTATTATCATAGTTGAATTGATTAGAGGAAAATGTAACTAAACTTACTTTATTAAGGTGACTTTTGGTTAACTTTGAAAGGCATTTATTTTCGATTTTTGGGTTTTGTGTTTGTTTATTTTTTACCCAAAAGGACCAACCAAAACACGGCGGCGAAATAATACCAAATAAAGTGATAGCGTGGGACTAGTGAATATTCCTTAAGAAGATATTTATGTGGTTAATATCACAATTAAAAGTATTCTTTAATTATCGATTTTTTTTTTATAATTAAATTCCACTTTCAAAAGATCATTAATATCCTTTCCCTTTTCTAGTTTTTCTCTTTTGTTATTATAGTTTTTTTTTATTATTATTAACTTTGGCTGTTATCCAGGAGGTGGCAGGATCGACGGTAGATCTAGCAGGAGATCGAGGAGGATATCATCTCTACCGCACACTTCAATTCAAGATCAGGTTAGTAAAAGAGGTCATATAACATTGTAATTTTTGCTTTTCATTAATGAATTCTGTTTGTTTCTTTTTTTTTTAATATATATATATATATATATATATATTGTAATTTATCTCATTTTAATCTTATTTATTTTTCATCAAAATTGTGCTCTTTGTTGCGATGTCGGGTGGAGCTTGAATTCTAATTGAAAAGGGATTATTAATATAATTAAGCATGGTTTTGTGCCCAAATATTTTGTATTTATTTAGTTTTTTCAGCTATGCTTTTCAGATTTTTTAATTATTGTTTATTTGAGTGGTAAATCAATTTTTTATTTAAATTTCATTGAATTAATAAAAGTTTCTAAAAATATAGGGATGGAAGCGATTTCCATTTTAGAAATATAAAAACCAATTAACATATGATAAAACGTCTAATTGGAAAAACAAATATAATATAATTATTTAGTCCAAATATTTATTCACATGCAACCGTTCGAATGGGTCAGTGTCGCACTTGATCATATTATTTTATGTTAATCCATTTCAACTCCACAGTTATGAGTTTGAGCCCGAAAATCGGCATTTGATTCTAAAAAAAATGTTTCATAGTGACTCTACTCCTGTACGGTCTTGGAGTTCGCTCATCTTTCTTTGGTGGTTGCTTGTACGTCAATAAGTATTTATGAGTTAATTTAACCTCCAAAGTTCATCAAAATTCAATTTTATAGTGTTAAAAAAAAATTGTTGGTCTTTTATATTGAGATCTTTCACTCCCATATATTTCAAGATAACTTTATAGGTCATATTAATCATTTTAGAGTTATCTTTATTAGTAGCTCTCAAAGTTTAGGTAGGTCCCCGACGTGTAAGGTACGACAAAAATTTTAAGGTCATATATTTTTGCATTTGTTTTTGGTTGTGAAAATTTGTTTGTACTTGTTGTTATTATCGATGAAGGTTTTGATTCTAAAAAAAAAAAAAAGTCCAAAACGTATTATTACTATTATTTATTATATAATTTTTTTGAGAAAAAAACGTATTAATTTAAACAGCAGTAATAAATTAATAAAAGAAAAGTTTCTCCTTCAATAATTAAAACCTTACTTAATAAATAACATAAATTGCTTAAAAATAATATTATAATTACATGTTTGTGTGATTTGATAGGTGGTCCCACAGATGGAGAATAGAGCTGTTGGGGATGAAGATGAGAGAGACCATCCCATGTCACATGTTAACTGATAAATATATAAATTATTATGATTATTTTTGCATTTTCCCCACTTTATTTCTTCTTTTAATCTTTATGTCTTTTCACAATAGTCTGTTACATCTAAATTAATGATGGTGTGAAAAAAGGCTTTAATTGGAAATTAGTGAACTTAATTGAGTGTGGAAGGATTAATTTTTGGCTACCTAGCTAAGATAGGTTAGACATCACTCATTGCATGTTTTTACTTTAATTGTACATTCTTATATTTGTTTAGATCTTAGATATGCAAATGTTGGTAGTCACTAATCTAGAATGTATAGACAGCCAATTAAATTTGAGTCAAATTTTGTATTAAGTTTAT

mRNA sequence

AAAAAAACCATCCTAATTAAAACTATTATTTTTCTTAATCCTTAATTTTTTTTTTTTATTCTTCTTCTTCTTCAAATTCATCTCTGTGTTTTTTTTTCTTTTCTTATAAACCCTAGCTATGGCGTCGCACGTGCAATTCGGCGAAACGGGGCCGTTTTGGACGGAGGAGAAGCACGTGCTGTTCTTGAATTCTATGGAAGCTTCTTTCGTCAGATCAATGCTCCAAAATCGCCGCCGTCTACGGCTGGACCGCCTCCTTCCGGACACCGCCGACTCAACCTTAGATTCATCTCTTAAGGACACCAAATTAATCCATCCAATCTCCGGAGGTGGCAGGATCGACGGTAGATCTAGCAGGAGATCGAGGAGGATATCATCTCTACCGCACACTTCAATTCAAGATCAGGTGGTCCCACAGATGGAGAATAGAGCTGTTGGGGATGAAGATGAGAGAGACCATCCCATGTCACATGTTAACTGATAAATATATAAATTATTATGATTATTTTTGCATTTTCCCCACTTTATTTCTTCTTTTAATCTTTATGTCTTTTCACAATAGTCTGTTACATCTAAATTAATGATGGTGTGAAAAAAGGCTTTAATTGGAAATTAGTGAACTTAATTGAGTGTGGAAGGATTAATTTTTGGCTACCTAGCTAAGATAGGTTAGACATCACTCATTGCATGTTTTTACTTTAATTGTACATTCTTATATTTGTTTAGATCTTAGATATGCAAATGTTGGTAGTCACTAATCTAGAATGTATAGACAGCCAATTAAATTTGAGTCAAATTTTGTATTAAGTTTAT

Coding sequence (CDS)

ATGGCGTCGCACGTGCAATTCGGCGAAACGGGGCCGTTTTGGACGGAGGAGAAGCACGTGCTGTTCTTGAATTCTATGGAAGCTTCTTTCGTCAGATCAATGCTCCAAAATCGCCGCCGTCTACGGCTGGACCGCCTCCTTCCGGACACCGCCGACTCAACCTTAGATTCATCTCTTAAGGACACCAAATTAATCCATCCAATCTCCGGAGGTGGCAGGATCGACGGTAGATCTAGCAGGAGATCGAGGAGGATATCATCTCTACCGCACACTTCAATTCAAGATCAGGTGGTCCCACAGATGGAGAATAGAGCTGTTGGGGATGAAGATGAGAGAGACCATCCCATGTCACATGTTAACTGA

Protein sequence

MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQNRRRLRLDRLLPDTADSTLDSSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMENRAVGDEDERDHPMSHVN
Homology
BLAST of Sed0022823 vs. NCBI nr
Match: XP_022945615.1 (uncharacterized protein LOC111449801 [Cucurbita moschata] >KAG6574168.1 hypothetical protein SDJN03_28055, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.8 bits (460), Expect = 3.5e-42
Identity = 95/123 (77.24%), Postives = 103/123 (83.74%), Query Frame = 0

Query: 1   MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDS 60
           MASHVQF +TGPFWT+EKHV FLNSMEASFVRSM +N   RRRLRL+RLLPDTADSTLDS
Sbjct: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60

Query: 61  SLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMENRAVGDEDERDHPMS 120
             K  K  HP +GGGR+DGRSSRRSRRISSLP  SIQDQVVPQMENRA  +EDE DHP S
Sbjct: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS 120

BLAST of Sed0022823 vs. NCBI nr
Match: XP_023542542.1 (uncharacterized protein LOC111802424 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.8 bits (460), Expect = 3.5e-42
Identity = 95/123 (77.24%), Postives = 103/123 (83.74%), Query Frame = 0

Query: 1   MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDS 60
           MASHVQF +TGPFWT+EKHV FLNSMEASFVRSM +N   RRRLRL+RLLPDTADSTLDS
Sbjct: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60

Query: 61  SLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMENRAVGDEDERDHPMS 120
             K  K  HP +GGGR+DGRSSRRSRRISSLP  SIQDQVVPQMENRA  +EDE DHP S
Sbjct: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS 120

BLAST of Sed0022823 vs. NCBI nr
Match: XP_022968364.1 (uncharacterized protein LOC111467625 [Cucurbita maxima])

HSP 1 Score: 178.3 bits (451), Expect = 3.9e-41
Identity = 94/123 (76.42%), Postives = 102/123 (82.93%), Query Frame = 0

Query: 1   MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDS 60
           MASHVQF +TGPFWT+EKHV FLNSMEASFVRSM +N   RRRLRL+RLLPDTADSTLDS
Sbjct: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60

Query: 61  SLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMENRAVGDEDERDHPMS 120
             K  K  HP +GGGR+DGRSSRRSRRISSLP  SIQDQVVPQMENRA  +EDE DH  S
Sbjct: 61  HQKYRKNHHPTAGGGRLDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHLTS 120

BLAST of Sed0022823 vs. NCBI nr
Match: XP_038882732.1 (uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida])

HSP 1 Score: 175.3 bits (443), Expect = 3.3e-40
Identity = 94/124 (75.81%), Postives = 99/124 (79.84%), Query Frame = 0

Query: 1   MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN----RRRLRLDRLLPDTADSTLD 60
           M SHVQF ETGPFWT EKH+ FLNSMEASFV+SM +N    RRRLRLDR LPDTADSTLD
Sbjct: 1   MESHVQFSETGPFWTNEKHMHFLNSMEASFVQSMFENRNHHRRRLRLDRHLPDTADSTLD 60

Query: 61  SSLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMENRAVGDEDERDHPM 120
           S  KD    H  S   RI+GRSSRRSRRISSLPHTS QDQVVPQ+E RAV DEDERDHPM
Sbjct: 61  SPQKDDTKNHATSEAVRINGRSSRRSRRISSLPHTSTQDQVVPQIEKRAVEDEDERDHPM 120

BLAST of Sed0022823 vs. NCBI nr
Match: XP_022984699.1 (uncharacterized protein LOC111482903 isoform X1 [Cucurbita maxima])

HSP 1 Score: 172.6 bits (436), Expect = 2.1e-39
Identity = 95/123 (77.24%), Postives = 100/123 (81.30%), Query Frame = 0

Query: 1   MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDS 60
           M SHVQF ET PFWT EKH+ FLNSMEASFVRSM +N   RRRLRLDR L DTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  SLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMENRAVGDEDERDHPMS 120
             K+ K  H IS G R+DGRSSRRSRRI SLPHTSIQDQVVPQME RAV DEDERDHP+S
Sbjct: 61  PQKNRKK-HSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLS 120

BLAST of Sed0022823 vs. ExPASy TrEMBL
Match: A0A6J1G1G2 (uncharacterized protein LOC111449801 OS=Cucurbita moschata OX=3662 GN=LOC111449801 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.7e-42
Identity = 95/123 (77.24%), Postives = 103/123 (83.74%), Query Frame = 0

Query: 1   MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDS 60
           MASHVQF +TGPFWT+EKHV FLNSMEASFVRSM +N   RRRLRL+RLLPDTADSTLDS
Sbjct: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60

Query: 61  SLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMENRAVGDEDERDHPMS 120
             K  K  HP +GGGR+DGRSSRRSRRISSLP  SIQDQVVPQMENRA  +EDE DHP S
Sbjct: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHPTS 120

BLAST of Sed0022823 vs. ExPASy TrEMBL
Match: A0A6J1HZF8 (uncharacterized protein LOC111467625 OS=Cucurbita maxima OX=3661 GN=LOC111467625 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.9e-41
Identity = 94/123 (76.42%), Postives = 102/123 (82.93%), Query Frame = 0

Query: 1   MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDS 60
           MASHVQF +TGPFWT+EKHV FLNSMEASFVRSM +N   RRRLRL+RLLPDTADSTLDS
Sbjct: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60

Query: 61  SLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMENRAVGDEDERDHPMS 120
             K  K  HP +GGGR+DGRSSRRSRRISSLP  SIQDQVVPQMENRA  +EDE DH  S
Sbjct: 61  HQKYRKNHHPTAGGGRLDGRSSRRSRRISSLPPISIQDQVVPQMENRAAEEEDEEDHLTS 120

BLAST of Sed0022823 vs. ExPASy TrEMBL
Match: A0A6J1JBA6 (uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.0e-39
Identity = 95/123 (77.24%), Postives = 100/123 (81.30%), Query Frame = 0

Query: 1   MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDS 60
           M SHVQF ET PFWT EKH+ FLNSMEASFVRSM +N   RRRLRLDR L DTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  SLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMENRAVGDEDERDHPMS 120
             K+ K  H IS G R+DGRSSRRSRRI SLPHTSIQDQVVPQME RAV DEDERDHP+S
Sbjct: 61  PQKNRKK-HSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLS 120

BLAST of Sed0022823 vs. ExPASy TrEMBL
Match: A0A6J1E5I2 (uncharacterized protein LOC111430892 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430892 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.3e-39
Identity = 95/123 (77.24%), Postives = 100/123 (81.30%), Query Frame = 0

Query: 1   MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDS 60
           M SHVQF ET PFWT EKH+ FLNSMEASFVRSM +N   RRRL+LDR L DTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDS 60

Query: 61  SLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMENRAVGDEDERDHPMS 120
             K+ K  H IS G R+DGRSSRRSRRI SLPHTSIQDQVVPQME RAV DEDERDHPMS
Sbjct: 61  PQKNRKK-HSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMS 120

BLAST of Sed0022823 vs. ExPASy TrEMBL
Match: A0A6J1J606 (uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.7e-39
Identity = 95/123 (77.24%), Postives = 100/123 (81.30%), Query Frame = 0

Query: 1   MASHVQFGETGPFWTEEKHVLFLNSMEASFVRSMLQN---RRRLRLDRLLPDTADSTLDS 60
           M SHVQF ET PFWT EKH+ FLNSMEASFVRSM +N   RRRLRLDR L DTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  SLKDTKLIHPISGGGRIDGRSSRRSRRISSLPHTSIQDQVVPQMENRAVGDEDERDHPMS 120
             K+ K  H IS G R+DGRSSRRSRRI SLPHTSIQDQVVPQME RAV DEDERDHP+S
Sbjct: 61  PQKNRKK-HSIS-GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLS 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022945615.13.5e-4277.24uncharacterized protein LOC111449801 [Cucurbita moschata] >KAG6574168.1 hypothet... [more]
XP_023542542.13.5e-4277.24uncharacterized protein LOC111802424 [Cucurbita pepo subsp. pepo][more]
XP_022968364.13.9e-4176.42uncharacterized protein LOC111467625 [Cucurbita maxima][more]
XP_038882732.13.3e-4075.81uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida][more]
XP_022984699.12.1e-3977.24uncharacterized protein LOC111482903 isoform X1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1G1G21.7e-4277.24uncharacterized protein LOC111449801 OS=Cucurbita moschata OX=3662 GN=LOC1114498... [more]
A0A6J1HZF81.9e-4176.42uncharacterized protein LOC111467625 OS=Cucurbita maxima OX=3661 GN=LOC111467625... [more]
A0A6J1JBA61.0e-3977.24uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1E5I21.3e-3977.24uncharacterized protein LOC111430892 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1J6068.7e-3977.24uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..99
NoneNo IPR availablePANTHERPTHR33676:SF15SUBFAMILY NOT NAMEDcoord: 1..114
IPR044678Cold-regulated protein 27/28PANTHERPTHR33676COLD REGULATED PROTEIN 27coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0022823.1Sed0022823.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042752 regulation of circadian rhythm
biological_process GO:0009409 response to cold