Sed0022473 (gene) Chayote v1

Overview
NameSed0022473
Typegene
OrganismSechium edule (Chayote v1)
DescriptionTropomyosin
LocationLG01: 6238313 .. 6238633 (-)
RNA-Seq ExpressionSed0022473
SyntenySed0022473
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCATAAAAATAGCGAAAAAGCTAATGGAGGATCAGAAAAATCTTCTAAATCCAAGCGTTCCTGCCGAAAATCTCGCCATGGTGCAAAAGAAGGTAAGCATTCCTCTAGTAGTGATGGTAGTGGACATGGAAACACTGGTGATGCAAATGAAAGTAGTGCCCCCGCGGTGGCTGCTGTCGCGGTCGCGGCAGTGGCTGTGGATGCATCTGAAGATGATGGTGGCAGCGCCCATGGCCACCACAGCCATGGCGTTGAGGGAGGCAGCGGAGGTGGTGGCGGAGATTAG

mRNA sequence

ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCATAAAAATAGCGAAAAAGCTAATGGAGGATCAGAAAAATCTTCTAAATCCAAGCGTTCCTGCCGAAAATCTCGCCATGGTGCAAAAGAAGGTAAGCATTCCTCTAGTAGTGATGGTAGTGGACATGGAAACACTGGTGATGCAAATGAAAGTAGTGCCCCCGCGGTGGCTGCTGTCGCGGTCGCGGCAGTGGCTGTGGATGCATCTGAAGATGATGGTGGCAGCGCCCATGGCCACCACAGCCATGGCGTTGAGGGAGGCAGCGGAGGTGGTGGCGGAGATTAG

Coding sequence (CDS)

ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCATAAAAATAGCGAAAAAGCTAATGGAGGATCAGAAAAATCTTCTAAATCCAAGCGTTCCTGCCGAAAATCTCGCCATGGTGCAAAAGAAGGTAAGCATTCCTCTAGTAGTGATGGTAGTGGACATGGAAACACTGGTGATGCAAATGAAAGTAGTGCCCCCGCGGTGGCTGCTGTCGCGGTCGCGGCAGTGGCTGTGGATGCATCTGAAGATGATGGTGGCAGCGCCCATGGCCACCACAGCCATGGCGTTGAGGGAGGCAGCGGAGGTGGTGGCGGAGATTAG

Protein sequence

MESSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANESSAPAVAAVAVAAVAVDASEDDGGSAHGHHSHGVEGGSGGGGGD
Homology
BLAST of Sed0022473 vs. NCBI nr
Match: KAG6605437.1 (hypothetical protein SDJN03_02754, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.9 bits (302), Expect = 6.5e-24
Identity = 85/109 (77.98%), Postives = 87/109 (79.82%), Query Frame = 0

Query: 1   MESSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDA 60
           MESSKICFCIPRHKN  KA+GGSEKSSKSK S RKSR  AK GKHS SSD SG GNTGDA
Sbjct: 460 MESSKICFCIPRHKNGLKADGGSEKSSKSKPSRRKSRRAAKGGKHSPSSDSSGDGNTGDA 519

Query: 61  NESSA-PAVAAVAVAA----VAVDASEDDGGSAHGHHSHGVEGGSGGGG 105
           NESSA  AVAAVAVAA    VAVDA EDDGGS+HG   HG EGG GGGG
Sbjct: 520 NESSASAAVAAVAVAAAATVVAVDALEDDGGSSHG---HGGEGGGGGGG 565

BLAST of Sed0022473 vs. NCBI nr
Match: KAG7035385.1 (hypothetical protein SDJN02_02181 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.9 bits (302), Expect = 6.5e-24
Identity = 85/109 (77.98%), Postives = 87/109 (79.82%), Query Frame = 0

Query: 1   MESSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDA 60
           MESSKICFCIPRHKN  KA+GGSEKSSKSK S RKSR  AK GKHS SSD SG GNTGDA
Sbjct: 478 MESSKICFCIPRHKNGLKADGGSEKSSKSKPSRRKSRRAAKGGKHSPSSDSSGDGNTGDA 537

Query: 61  NESSA-PAVAAVAVAA----VAVDASEDDGGSAHGHHSHGVEGGSGGGG 105
           NESSA  AVAAVAVAA    VAVDA EDDGGS+HG   HG EGG GGGG
Sbjct: 538 NESSASAAVAAVAVAAAATVVAVDALEDDGGSSHG---HGGEGGGGGGG 583

BLAST of Sed0022473 vs. NCBI nr
Match: TYK15390.1 (tropomyosin [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 8.4e-24
Identity = 77/104 (74.04%), Postives = 84/104 (80.77%), Query Frame = 0

Query: 3   SSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANE 62
           SSKICFCIPRHKN  KA+GGSEKSSKSK S RKSR G+KEGKHSS SD SG+GN+GDA  
Sbjct: 433 SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGA 492

Query: 63  SSAPAVAAVAVAAVAVDASEDDGGSAHGHHSHGVEGGSGGGGGD 107
           +SA AVAAVAV AV +DA +DDGGS    H HG EGGSGG GGD
Sbjct: 493 ASATAVAAVAVTAVTMDALDDDGGST---HVHGGEGGSGGAGGD 533

BLAST of Sed0022473 vs. NCBI nr
Match: KAA0061866.1 (tropomyosin [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 8.4e-24
Identity = 77/104 (74.04%), Postives = 84/104 (80.77%), Query Frame = 0

Query: 3   SSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANE 62
           SSKICFCIPRHKN  KA+GGSEKSSKSK S RKSR G+KEGKHSS SD SG+GN+GDA  
Sbjct: 463 SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGA 522

Query: 63  SSAPAVAAVAVAAVAVDASEDDGGSAHGHHSHGVEGGSGGGGGD 107
           +SA AVAAVAV AV +DA +DDGGS    H HG EGGSGG GGD
Sbjct: 523 ASATAVAAVAVTAVTMDALDDDGGST---HVHGGEGGSGGAGGD 563

BLAST of Sed0022473 vs. NCBI nr
Match: KAG7010529.1 (hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.5 bits (280), Expect = 2.3e-21
Identity = 79/106 (74.53%), Postives = 85/106 (80.19%), Query Frame = 0

Query: 1   MESSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDA 60
           MESSKICFCIPRHKNS K +GGSEKSSKSK S RKS  GAKEGKHSSSSD SG+GNTGDA
Sbjct: 57  MESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDA 116

Query: 61  NES-SAPAVAAVAVAAVAVDA-SEDDGGSAHGHHSHGVEGGSGGGG 105
           + + SA AVAA+AV AV +DA  EDDGGS    H HG EGG GGGG
Sbjct: 117 SAAGSAAAVAAIAVTAVTMDAVDEDDGGST---HVHGGEGGGGGGG 157

BLAST of Sed0022473 vs. ExPASy TrEMBL
Match: A0A5D3CVK1 (Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00300 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.1e-24
Identity = 77/104 (74.04%), Postives = 84/104 (80.77%), Query Frame = 0

Query: 3   SSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANE 62
           SSKICFCIPRHKN  KA+GGSEKSSKSK S RKSR G+KEGKHSS SD SG+GN+GDA  
Sbjct: 433 SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGA 492

Query: 63  SSAPAVAAVAVAAVAVDASEDDGGSAHGHHSHGVEGGSGGGGGD 107
           +SA AVAAVAV AV +DA +DDGGS    H HG EGGSGG GGD
Sbjct: 493 ASATAVAAVAVTAVTMDALDDDGGST---HVHGGEGGSGGAGGD 533

BLAST of Sed0022473 vs. ExPASy TrEMBL
Match: A0A5A7V5U9 (Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G001080 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.1e-24
Identity = 77/104 (74.04%), Postives = 84/104 (80.77%), Query Frame = 0

Query: 3   SSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANE 62
           SSKICFCIPRHKN  KA+GGSEKSSKSK S RKSR G+KEGKHSS SD SG+GN+GDA  
Sbjct: 463 SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGA 522

Query: 63  SSAPAVAAVAVAAVAVDASEDDGGSAHGHHSHGVEGGSGGGGGD 107
           +SA AVAAVAV AV +DA +DDGGS    H HG EGGSGG GGD
Sbjct: 523 ASATAVAAVAVTAVTMDALDDDGGST---HVHGGEGGSGGAGGD 563

BLAST of Sed0022473 vs. ExPASy TrEMBL
Match: A0A0A0KFD0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188150 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 72/102 (70.59%), Postives = 79/102 (77.45%), Query Frame = 0

Query: 3   SSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANE 62
           SSKICFCIPRHKN  KA+GGSEKSSKSK S RKS   +KEGKHSSSSD SG+GN G+   
Sbjct: 4   SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECA 63

Query: 63  SSAPAVAAVAVAAVAVDASEDDGGSAHGHHSHGVEGGSGGGG 105
           +SA AVAAVAV AV +DA +DDGGS    H HG EGGSG GG
Sbjct: 64  ASATAVAAVAVTAVTMDALDDDGGST---HVHGGEGGSGAGG 102

BLAST of Sed0022473 vs. ExPASy TrEMBL
Match: A0A6J1D515 (circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111017006 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-18
Identity = 70/112 (62.50%), Postives = 77/112 (68.75%), Query Frame = 0

Query: 1   MESSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNT--- 60
           MES+KICFCIPRHKN  KANGGSEKSSKSK S RKSR G K GKHSSSSD SG GNT   
Sbjct: 1   MESTKICFCIPRHKNGHKANGGSEKSSKSKPSRRKSRRGEKGGKHSSSSDSSGDGNTNTG 60

Query: 61  ---GDANESSAPAVAAVAVAAVAVDASEDDGGSAHGHHSHGVEGGSGGGGGD 107
              G  ++++  AV  +   A  +DA EDDGGSAHGH      GG  GGGGD
Sbjct: 61  AAAGGGSDAAVAAVVVMGTTAATMDAVEDDGGSAHGH-----GGGGEGGGGD 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6605437.16.5e-2477.98hypothetical protein SDJN03_02754, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7035385.16.5e-2477.98hypothetical protein SDJN02_02181 [Cucurbita argyrosperma subsp. argyrosperma][more]
TYK15390.18.4e-2474.04tropomyosin [Cucumis melo var. makuwa][more]
KAA0061866.18.4e-2474.04tropomyosin [Cucumis melo var. makuwa][more]
KAG7010529.12.3e-2174.53hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CVK14.1e-2474.04Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00300 PE... [more]
A0A5A7V5U94.1e-2474.04Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G001080 PE... [more]
A0A0A0KFD01.2e-2070.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188150 PE=4 SV=1[more]
A0A6J1D5151.5e-1862.50circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111017006 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0022473.1Sed0022473.1mRNA