Sed0022096 (gene) Chayote v1

Overview
NameSed0022096
Typegene
OrganismSechium edule (Chayote v1)
DescriptionProlamin_like domain-containing protein
LocationLG09: 4506919 .. 4507320 (+)
RNA-Seq ExpressionSed0022096
SyntenySed0022096
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAGAAAACCAACACAGTGGTGACATTAATGGGGATTCTCTCATGGACAACAATTTTGCCAACCTTAGTTCCACGCTCGATGGCAGCCGACGATTACAATTCACCTATATGGAATGGATGGGTAGACGAGGATAGAGGATACACCCTTCGACCATGTCTGGATATGGTGAAGAATGCAAAATGTCAGGTGGAACTTTACAAGTACTACTTCAATATAAGTAAGAAAGAATTGGATCTAAATTGTTGCGTCTTCGTCAAATTCATGGGAAAAAGTTGCGCCAAAGCTTTTACTTTTTGGTTTGACTTTCCGGATTTGGAAGTCTTGAAACCTAATCCCATGATGGCATATAAAACTTGTGTTAGAAGACTTGATGCTCCCTCACCTTCGAAATTTTAA

mRNA sequence

ATGACAAAGAAAACCAACACAGTGGTGACATTAATGGGGATTCTCTCATGGACAACAATTTTGCCAACCTTAGTTCCACGCTCGATGGCAGCCGACGATTACAATTCACCTATATGGAATGGATGGGTAGACGAGGATAGAGGATACACCCTTCGACCATGTCTGGATATGGTGAAGAATGCAAAATGTCAGGTGGAACTTTACAAGTACTACTTCAATATAAGTAAGAAAGAATTGGATCTAAATTGTTGCGTCTTCGTCAAATTCATGGGAAAAAGTTGCGCCAAAGCTTTTACTTTTTGGTTTGACTTTCCGGATTTGGAAGTCTTGAAACCTAATCCCATGATGGCATATAAAACTTGTGTTAGAAGACTTGATGCTCCCTCACCTTCGAAATTTTAA

Coding sequence (CDS)

ATGACAAAGAAAACCAACACAGTGGTGACATTAATGGGGATTCTCTCATGGACAACAATTTTGCCAACCTTAGTTCCACGCTCGATGGCAGCCGACGATTACAATTCACCTATATGGAATGGATGGGTAGACGAGGATAGAGGATACACCCTTCGACCATGTCTGGATATGGTGAAGAATGCAAAATGTCAGGTGGAACTTTACAAGTACTACTTCAATATAAGTAAGAAAGAATTGGATCTAAATTGTTGCGTCTTCGTCAAATTCATGGGAAAAAGTTGCGCCAAAGCTTTTACTTTTTGGTTTGACTTTCCGGATTTGGAAGTCTTGAAACCTAATCCCATGATGGCATATAAAACTTGTGTTAGAAGACTTGATGCTCCCTCACCTTCGAAATTTTAA

Protein sequence

MTKKTNTVVTLMGILSWTTILPTLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKNAKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCAKAFTFWFDFPDLEVLKPNPMMAYKTCVRRLDAPSPSKF
Homology
BLAST of Sed0022096 vs. NCBI nr
Match: KAA0046835.1 (hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA0046840.1 hypothetical protein E6C27_scaffold216G001400 [Cucumis melo var. makuwa] >KAA0065932.1 hypothetical protein E6C27_scaffold10942G00010 [Cucumis melo var. makuwa] >TYK04499.1 hypothetical protein E5676_scaffold409G001130 [Cucumis melo var. makuwa] >TYK14838.1 hypothetical protein E5676_scaffold6575G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 189.1 bits (479), Expect = 2.4e-44
Identity = 83/120 (69.17%), Postives = 95/120 (79.17%), Query Frame = 0

Query: 14  ILSWTTILPTLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKNAKCQVELYKYYFN 73
           IL +   L  LV  S   +DYNSPIW+GWVDEDRGYTLRPCLD +++AKCQVELY YYFN
Sbjct: 6   ILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNYYFN 65

Query: 74  ISKKELDLNCCVFVKFMGKSCAKAFTFWFDFPDLEVLKPNPMMAYKTCVRRLDAPSPSKF 133
           ISKKELDLNCCVFVK MGK CA+AFTFW+ FP LE+ +PNPM  Y  C+ RLDAP P+ F
Sbjct: 66  ISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPPAPF 125

BLAST of Sed0022096 vs. NCBI nr
Match: KAA0046841.1 (hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK04493.1 hypothetical protein E5676_scaffold409G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 177.9 bits (450), Expect = 5.6e-41
Identity = 87/135 (64.44%), Postives = 97/135 (71.85%), Query Frame = 0

Query: 1   MTKKTNTVVTLMGILSWTTILPTLVPRSMA--ADDYNSPIWNGWVDEDRGYTLRPCLDMV 60
           M   TNTV  ++ IL     L  LV  SMA   DDYNSPIWNGWVDEDR   LRPCLDM+
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  KNAKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCAKAFTFWFDFPDLEVLKPNPMMAY 120
           K+AKCQV+LY YYFNISKKELDL CCVFVK MGK CA AF  W++FP LEV +PNPM+ Y
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 KTCVRRLDAPSPSKF 134
             CV RL A  P+ F
Sbjct: 121 NNCVGRLQALPPTPF 135

BLAST of Sed0022096 vs. NCBI nr
Match: KAG6578867.1 (hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175.3 bits (443), Expect = 3.6e-40
Identity = 83/122 (68.03%), Postives = 90/122 (73.77%), Query Frame = 0

Query: 12  MGILSWTTILPTLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKNAKCQVELYKYY 71
           M IL     L  L   S A DDYNSPIW+ WVDEDRG  LRPCLDM+K+AKCQVELY YY
Sbjct: 4   MVILLLAINLAFLAQPSTADDDYNSPIWDRWVDEDRGINLRPCLDMMKSAKCQVELYNYY 63

Query: 72  FNISKKELDLNCCVFVKFMGKSCAKAFTFWFDFPDLEVLKPNPMMAYKTCVRRLDAPSPS 131
           FNISKKELDLNCCVFVK MGK CA+AF  WF FP+ EV + NPM  YK CV RLDA  P+
Sbjct: 64  FNISKKELDLNCCVFVKVMGKRCARAFAGWFRFPEFEVFELNPMKVYKNCVGRLDALPPA 123

Query: 132 KF 134
            F
Sbjct: 124 PF 125

BLAST of Sed0022096 vs. NCBI nr
Match: KAE8646662.1 (hypothetical protein Csa_004797, partial [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-34
Identity = 72/112 (64.29%), Postives = 87/112 (77.68%), Query Frame = 0

Query: 4   KTNTVVTLMGILSWTTILPTLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKNAKC 63
           KTN +  ++ +LS T  L  LV      +DYNS IWN W+DEDR +TLRPCLD +++AKC
Sbjct: 30  KTNAMRAMLILLS-TINLAKLVQPYGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSAKC 89

Query: 64  QVELYKYYFNISKKELDLNCCVFVKFMGKSCAKAFTFWFDFPDLEVLKPNPM 116
           QVELY YYFNISK+ELDLNCCVFVK MGK CA+AFTFW+ FP LE+ +PNPM
Sbjct: 90  QVELYNYYFNISKEELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPM 140

BLAST of Sed0022096 vs. NCBI nr
Match: KAG6575249.1 (hypothetical protein SDJN03_25888, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155.6 bits (392), Expect = 3.0e-34
Identity = 74/130 (56.92%), Postives = 93/130 (71.54%), Query Frame = 0

Query: 1   MTKKTNTVVTLMGILSWTTILPTLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKN 60
           M K+T+T+  ++ +L     L   V  + A  DYNSPIW+ W+DEDR Y LRPCL+++K+
Sbjct: 1   MAKETSTLGAMV-VLLLAVNLQGFVRVTSADVDYNSPIWDRWLDEDRAYYLRPCLNLMKS 60

Query: 61  AKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCAKAFTFWFDFPDLEVLKPNPMMAYKT 120
           AKCQV+LY  YFN+SK+ELDLNCCVFVK MGK+CA  F  WFD+P  EV KPNPM  YK 
Sbjct: 61  AKCQVQLYNNYFNLSKEELDLNCCVFVKVMGKNCALDFAGWFDYPIFEVYKPNPMNLYKR 120

Query: 121 CVRRLDAPSP 131
           CV RL +  P
Sbjct: 121 CVARLSSSIP 129

BLAST of Sed0022096 vs. ExPASy TrEMBL
Match: A0A5D3C280 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001130 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.2e-44
Identity = 83/120 (69.17%), Postives = 95/120 (79.17%), Query Frame = 0

Query: 14  ILSWTTILPTLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKNAKCQVELYKYYFN 73
           IL +   L  LV  S   +DYNSPIW+GWVDEDRGYTLRPCLD +++AKCQVELY YYFN
Sbjct: 6   ILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNYYFN 65

Query: 74  ISKKELDLNCCVFVKFMGKSCAKAFTFWFDFPDLEVLKPNPMMAYKTCVRRLDAPSPSKF 133
           ISKKELDLNCCVFVK MGK CA+AFTFW+ FP LE+ +PNPM  Y  C+ RLDAP P+ F
Sbjct: 66  ISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPPAPF 125

BLAST of Sed0022096 vs. ExPASy TrEMBL
Match: A0A5A7TZR1 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001070 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.7e-41
Identity = 87/135 (64.44%), Postives = 97/135 (71.85%), Query Frame = 0

Query: 1   MTKKTNTVVTLMGILSWTTILPTLVPRSMA--ADDYNSPIWNGWVDEDRGYTLRPCLDMV 60
           M   TNTV  ++ IL     L  LV  SMA   DDYNSPIWNGWVDEDR   LRPCLDM+
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  KNAKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCAKAFTFWFDFPDLEVLKPNPMMAY 120
           K+AKCQV+LY YYFNISKKELDL CCVFVK MGK CA AF  W++FP LEV +PNPM+ Y
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 KTCVRRLDAPSPSKF 134
             CV RL A  P+ F
Sbjct: 121 NNCVGRLQALPPTPF 135

BLAST of Sed0022096 vs. ExPASy TrEMBL
Match: A0A0A0KEB8 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 7.9e-41
Identity = 81/131 (61.83%), Postives = 96/131 (73.28%), Query Frame = 0

Query: 1   MTKKTNTVVTLMGILSWTTILPTLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKN 60
           M  KTN +  ++ +LS    L  LV  S   +DYNS IWN W+DEDR +TLRPCLD +++
Sbjct: 1   MANKTNAMRAMVILLS-AINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRS 60

Query: 61  AKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCAKAFTFWFDFPDLEVLKPNPMMAYKT 120
           AKCQVELY YYFNISKKELDLNCCVFVK MGK CA+AFTFW+ FP LE+ +PNPM  Y  
Sbjct: 61  AKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNN 120

Query: 121 CVRRLDAPSPS 132
           C  RL AP P+
Sbjct: 121 CATRLSAPPPT 130

BLAST of Sed0022096 vs. ExPASy TrEMBL
Match: A0A0A0KQ41 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.6e-33
Identity = 70/124 (56.45%), Postives = 87/124 (70.16%), Query Frame = 0

Query: 8   VVTLMGILSWTTILPTLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKNAKCQVEL 67
           VV ++ +L   ++   LV  S   D+  S IW+ W+DEDR  TL PCL M+++ KCQVEL
Sbjct: 10  VVVMLSLLVVDSL--ALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSEKCQVEL 69

Query: 68  YKYYFNISKKELDLNCCVFVKFMGKSCAKAFTFWFDFPDLEVLKPNPMMAYKTCVRRLDA 127
           Y YYFNISKKELDL+CCV+V +MGK CA AF FWF FP LE LKPNPM  Y  C +RL  
Sbjct: 70  YNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNCFKRLTF 129

Query: 128 PSPS 132
           P+P+
Sbjct: 130 PAPT 131

BLAST of Sed0022096 vs. ExPASy TrEMBL
Match: A0A0A0L535 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.6e-25
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 0

Query: 1   MTKKTNTVVTLMGILSWTTILP---TLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDM 60
           M K +N+   L+ ++  + ++     LV  S+  D+  S IW+GW+D+DR   L  CL +
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  VKNAKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCAKAFTFWFDFPDLEVLKPNPMMA 120
           +K+ KCQVELY YYFN SKKE+DL+CCV+V ++G+ CA +F  WF     + LKPNPM  
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YKTCVRRLDAPSP 131
           Y  C +RL  P+P
Sbjct: 121 YNNCFKRLTVPAP 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0046835.12.4e-4469.17hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA004... [more]
KAA0046841.15.6e-4164.44hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK044... [more]
KAG6578867.13.6e-4068.03hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8646662.11.3e-3464.29hypothetical protein Csa_004797, partial [Cucumis sativus][more]
KAG6575249.13.0e-3456.92hypothetical protein SDJN03_25888, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C2801.2e-4469.17Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7TZR12.7e-4164.44Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A0A0KEB87.9e-4161.83Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0543... [more]
A0A0A0KQ411.6e-3356.45Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G3818... [more]
A0A0A0L5351.6e-2544.36Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0083... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008502Prolamin-like domainPFAMPF05617Prolamin_likecoord: 54..105
e-value: 5.9E-5
score: 23.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0022096.1Sed0022096.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity