Sed0021477 (gene) Chayote v1

Overview


Name	Sed0021477
Type	gene
Organism	Sechium edule (Chayote v1)
Description	LITAF domain-containing protein
Location	LG07: 1174915 .. 1178359 (-)
RNA-Seq Expression	Sed0021477
Synteny	Sed0021477

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGGTCTTACGATGCCGTTTTACGTAGGGCCAAACCTAAACCAATCACAGCAACGTATTCATTTCCTTAACGAAGAAATTTCGCCGCAATTGCTCCGATCGTAATTCTCCATCTCCGTCATCAATTTCTATTCCAAACAATTTTCAGATCGCCGGCGGAGAAGCAGAGAGAGAGAGAGAGAAAGGTTGGAACGATGTCGAAGACCGACGAGCCGGTCGTCGGAGTTCCATTCTACGTCGGCAACAACGCGTATCAGGCCGGACAGATCCCGCCGAACGCCATTTTTGGCGATCCACAGGGAGTTCCTATCCACCAGACCATGTACCGCGACACTCCCGCTCCTTTCTACTGTTTCTATTGTGGAACTCCCGGTCTCACCGCCGTCAGGTTCCTTTTCTACAATCTCTCGACCTCTGCGTCTACGTGATTTGAAATTAGGCGTCCAATTATTCTGTTAATCGTTGTTTTTCTTTTCGATCATTAGCTCAATCTTAGTTTTAGTTGAATGAGGATTGGAATTTTCGATTTGGTTGATTGAGACGTGTTCTTGATTGATCAATCGGCATAGTTGTCTTTGACCTAATTTTCTTCTTTAGGATTAGAAGTACTTTTACTGGATAAAATTTCTTAGGTTGTGGAGCTTGATTCTTGCTTACAGCATAAGGCAGGAATTGTCTGGTTGTTGCGCGGATATGCTCAAGCAATTAATTGAAATGATTTTAGAGCCGTTTACCCTATTTTGTTGAAATTCCTTCGAAATAGTTGCTGTTTGAATGCTCATTTAGTTCAACCAGAATTGAGGTGGAGGATTCGAACTCACGGACCTATTGCTTACAAGCATACACTTACGCCTATGAGCTATTCCTCTGGTTTGCGTTATTGTTTGAATATTAAGTCCCTGATTCTGCTCTATAAACTATACTACGTTTGTATTGGTTTCTAAATTGACCCTTCCCTAAACTCAACCCAACTGAAATTTCTTTTTGTTTTTAATAAGAAACTATGTCACTAAAAGATGAAATATAGGATCCAAAGGATCATTACAAAATATCAATACAATAGACCTTTCCTATTTGGAAAGGAGGGTAGAAAGCGAGTAATCCTTAAAGAGCGTTGAGTGTTTAACCCAACTTTACTATTGTCTAATACTATTGAGACAATGCTGTTTGTATTTGGTTTCATGCATAAAACTAACTTGATTCACGGCAATTAGTCTGTCTATAAATTTGTTTGGAATACTGAGAACAGGGCCAGGTGCAAGTTGGAAAAAAGTTCAAGGCCTCCCAAATGGTTTACATCATACCAAGTTTTGTTTGGCTGTAAATCCTCTTCATGTTAGAAAGATTTAAATGGCTTACTCTTACATAAACATTCTGTGTTAAAAAATAACATTATTATTAGTGTGGCAGCTTAATTTGCCTTGCAACCGGGTACTTGAAATTGTATCGTGAAGGATTTGTCAACCAATCTACTTTATTGGTATTGCATTAAAATTTATATTTTTCCGATGCTTTGTTCTACAACAATAATGAAAATTATTACATAATAGCATAAATCAAATATGCTACCATTTTACAAATTTAGTTTTTATTGTAAGCAGCATAAAGAATGTAAGTTCAAATGTTGGAATTGTATACAATCTGACAAAAGTTTTGTTGCACATTAGCTCAAGAATTTTTGTAGCAAGGCGTCAATATGATTTATCATGTTTAGGCTGCTAAAAAGTTTGTGTAAGATGTAGGAAGGGGAGAGGGGTTGATGTTGTATATTTGTGTTCAGTCGAATAATTATGCTCCTTCATCTGGTTATGATACTTGACCTCTACAGATCAAAGTTAAGTTCAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGCTGGGAGTATGCTTTCTTTTTCCTTCGATGGACTGCCTTTGGCATAAATATCACTATTGCCCCAGCTGCAAAGAAAAGGTATGACTATATGATATTCGGTCACTTTTCATTGTCTGTTGTGTTTGTAATCTACATATTGGTTATTTGACACTTTTGCTCCGTTATAGACAATTGGAGTAACTAACTATGCTATCCACCCTTTGTTTAGGTTGGTGAATTTGAGAAATTGGATAGGTGTGCTGTGATGGATCCTCCACACTGGAGACAGGAAAGCTTTGCATTGCCTGCTTGATTTTCATGAACTGCTTTTTTTTTCCGTGTGATTATTTTGCATCGTGTGCAGTCAGTATTTGCTACTCTTGTGCTCTTTATGAGATGTTCTTGTTACACTCAGGGATAGACTAAATATCCATGCATATTTACAATTATGATAGAACCAAATATATCATGCCGCTTGTAAATACCTTGTTCTTACATTGGCATTATTGCTTAATATGTCATACTGCTGGCTTAGTTTGGGCAAATCATTTCATAGACCTCTTGATCATTCACCTCACAAGTCAAGATTGAATACAGTTGTCCAATTTATTTCCCATGGCTATTCACTATCTGCATCTCCCTAGCAACCGTGCACCTCATCGTGGACGAATCATCATAGGGTTTTCTTTTTTTCCTTCTTTGGTTAGCTGGAATGTAGTCCAGTAAAGATCATAGGGTTTTCTTTTTTTTCTTCCTTCTTGAGTGGACTTGAATTCTGATCATTGATGATACTAGCTATTTGGTACCCAACAATGAAGAAACATCTAGGAAAAGATAATATAACCTGAGTTCATGCTGTGAAGCTTATGCAGGTAAAAAGAATCCAAGTTGATTGACCGGGTTTTTCGATCTGGAAGCGAAGGTTCGGCATGAGAAATAAGAGCCAGTCTTGATAGCCGAAGAGACTGCCTGCAGGGTATGCCATTGCAGGATCTTCACTCAAACTTGAATATGCAGCTTTTACAGATCCCTTTTATGGAGTTGCAGGCTGCAGGCAAGTCATCCTTGGCTACAATACATGACTCTCCATTCCCATGTTGAACCTTGCTTCCTCTCTTCCACATAAATCAGCTAGAATTGAAACTTCCTTCTAAATTGGCAGCCCTTTTGAACTAAAAGGAGAATTTATGTATGCATGTATGAATACCCTCCTTAATTGGCTTAGTTGTCAAGAAAGCCTCGTTGAACCAAAAGGTCATGGATTCCATCCATCTGGGTCACCTATTTAGGAGTTTATTTCTTATGAATTATCTATATGTATTGGAGGGTCAAACAATTTGTTTTAGGAGAACAGTCGGGGCACACTTAAGTGTTTTTGGACACTCACGGATGAATGTATGCATGTCTAGTTGTGTGTGTGCATTGGAGTTTGGTTTTTAAGTTAAACTCAGCAGCAGCTCCACAACAATCTATTGCGGTCTACACTCGTCGAGGTTGTCTGTCTCGGAATATATTCTTTATATGTAAAAATGTCGTTGGCTATTTCTATAGATCAAGCCCCCCACCCCCACAATGCCTATGTTCAGAG

mRNA sequence

AGAAGGTCTTACGATGCCGTTTTACGTAGGGCCAAACCTAAACCAATCACAGCAACGTATTCATTTCCTTAACGAAGAAATTTCGCCGCAATTGCTCCGATCGTAATTCTCCATCTCCGTCATCAATTTCTATTCCAAACAATTTTCAGATCGCCGGCGGAGAAGCAGAGAGAGAGAGAGAGAAAGGTTGGAACGATGTCGAAGACCGACGAGCCGGTCGTCGGAGTTCCATTCTACGTCGGCAACAACGCGTATCAGGCCGGACAGATCCCGCCGAACGCCATTTTTGGCGATCCACAGGGAGTTCCTATCCACCAGACCATGTACCGCGACACTCCCGCTCCTTTCTACTGTTTCTATTGTGGAACTCCCGGTCTCACCGCCGTCAGATCAAAGTTAAGTTCAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGCTGGGAGTATGCTTTCTTTTTCCTTCGATGGACTGCCTTTGGCATAAATATCACTATTGCCCCAGCTGCAAAGAAAAGGTTGGTGAATTTGAGAAATTGGATAGGTGTGCTGTGATGGATCCTCCACACTGGAGACAGGAAAGCTTTGCATTGCCTGCTTGATTTTCATGAACTGCTTTTTTTTTCCGTGTGATTATTTTGCATCGTGTGCAGTCAGTATTTGCTACTCTTGTGCTCTTTATGAGATGTTCTTGTTACACTCAGGGATAGACTAAATATCCATGCATATTTACAATTATGATAGAACCAAATATATCATGCCGCTTGTAAATACCTTGTTCTTACATTGGCATTATTGCTTAATATGTCATACTGCTGGCTTAGTTTGGGCAAATCATTTCATAGACCTCTTGATCATTCACCTCACAAGTCAAGATTGAATACAGTTGTCCAATTTATTTCCCATGGCTATTCACTATCTGCATCTCCCTAGCAACCGTGCACCTCATCGTGGACGAATCATCATAGGGTTTTCTTTTTTTCCTTCTTTGGTTAGCTGGAATGTAGTCCAGTAAAGATCATAGGGTTTTCTTTTTTTTCTTCCTTCTTGAGTGGACTTGAATTCTGATCATTGATGATACTAGCTATTTGGTACCCAACAATGAAGAAACATCTAGGAAAAGATAATATAACCTGAGTTCATGCTGTGAAGCTTATGCAGGTAAAAAGAATCCAAGTTGATTGACCGGGTTTTTCGATCTGGAAGCGAAGGTTCGGCATGAGAAATAAGAGCCAGTCTTGATAGCCGAAGAGACTGCCTGCAGGGTATGCCATTGCAGGATCTTCACTCAAACTTGAATATGCAGCTTTTACAGATCCCTTTTATGGAGTTGCAGGCTGCAGGCAAGTCATCCTTGGCTACAATACATGACTCTCCATTCCCATGTTGAACCTTGCTTCCTCTCTTCCACATAAATCAGCTAGAATTGAAACTTCCTTCTAAATTGGCAGCCCTTTTGAACTAAAAGGAGAATTTATGTATGCATGTATGAATACCCTCCTTAATTGGCTTAGTTGTCAAGAAAGCCTCGTTGAACCAAAAGGTCATGGATTCCATCCATCTGGGTCACCTATTTAGGAGTTTATTTCTTATGAATTATCTATATGTATTGGAGGGTCAAACAATTTGTTTTAGGAGAACAGTCGGGGCACACTTAAGTGTTTTTGGACACTCACGGATGAATGTATGCATGTCTAGTTGTGTGTGTGCATTGGAGTTTGGTTTTTAAGTTAAACTCAGCAGCAGCTCCACAACAATCTATTGCGGTCTACACTCGTCGAGGTTGTCTGTCTCGGAATATATTCTTTATATGTAAAAATGTCGTTGGCTATTTCTATAGATCAAGCCCCCCACCCCCACAATGCCTATGTTCAGAG

Coding sequence (CDS)

ATGTCGAAGACCGACGAGCCGGTCGTCGGAGTTCCATTCTACGTCGGCAACAACGCGTATCAGGCCGGACAGATCCCGCCGAACGCCATTTTTGGCGATCCACAGGGAGTTCCTATCCACCAGACCATGTACCGCGACACTCCCGCTCCTTTCTACTGTTTCTATTGTGGAACTCCCGGTCTCACCGCCGTCAGATCAAAGTTAAGTTCAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGCTGGGAGTATGCTTTCTTTTTCCTTCGATGGACTGCCTTTGGCATAAATATCACTATTGCCCCAGCTGCAAAGAAAAGGTTGGTGAATTTGAGAAATTGGATAGGTGTGCTGTGATGGATCCTCCACACTGGAGACAGGAAAGCTTTGCATTGCCTGCTTGA

Protein sequence

MSKTDEPVVGVPFYVGNNAYQAGQIPPNAIFGDPQGVPIHQTMYRDTPAPFYCFYCGTPGLTAVRSKLSSAAVVGCMMPFMLGVCFLFPSMDCLWHKYHYCPSCKEKVGEFEKLDRCAVMDPPHWRQESFALPA

Homology

[Close]

BLAST of Sed0021477 vs. NCBI nr
Match: XP_022954275.1 (GSH-induced LITAF domain protein [Cucurbita moschata] >XP_023547364.1 GSH-induced LITAF domain protein [Cucurbita pepo subsp. pepo] >KAG6576107.1 GSH-induced LITAF domain protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014627.1 GSH-induced LITAF domain protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 262.7 bits (670), Expect = 1.7e-66
Identity = 116/134 (86.57%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MSKTDEPVVGVPFYVGNNAYQAGQIPPNAIFGDPQGVPIHQTMYRDTPAPFYCFYCGTPG 60
           MSK DEPVVG+PFYVGNNAYQAGQIPPNAIFG PQGVPIHQTMYRDTPAP+ C YCG  G
Sbjct: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60

Query: 61  LTAVRSKLSSAAVVGCMMPFMLGVCFLFPSMDCLWHKYHYCPSCKEKVGEFEKLDRCAVM 120
           LT++RSK+S AAVVGCMMPFMLGVCFL PSMDCLWHKYHYCPSCKEKVG+FEK D CAVM
Sbjct: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120

Query: 121 DPPHWRQESFALPA 135
           DPPHW Q SFALPA
Sbjct: 121 DPPHWTQPSFALPA 134

[Close]

BLAST of Sed0021477 vs. NCBI nr
Match: XP_022991744.1 (GSH-induced LITAF domain protein [Cucurbita maxima])

HSP 1 Score: 262.3 bits (669), Expect = 2.3e-66
Identity = 115/134 (85.82%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MSKTDEPVVGVPFYVGNNAYQAGQIPPNAIFGDPQGVPIHQTMYRDTPAPFYCFYCGTPG 60
           MSK DEPVVG+PFYVGNN+YQAGQIPPNAIFG PQGVPIHQTMYRDTPAP+ C YCG  G
Sbjct: 1   MSKNDEPVVGIPFYVGNNSYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60

Query: 61  LTAVRSKLSSAAVVGCMMPFMLGVCFLFPSMDCLWHKYHYCPSCKEKVGEFEKLDRCAVM 120
           LT++RSK+S AAVVGCMMPFMLGVCFL PSMDCLWHKYHYCPSCKEKVG+FEK D CAVM
Sbjct: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDACAVM 120

Query: 121 DPPHWRQESFALPA 135
           DPPHW Q SFALPA
Sbjct: 121 DPPHWTQPSFALPA 134

[Close]

BLAST of Sed0021477 vs. NCBI nr
Match: XP_022148974.1 (GSH-induced LITAF domain protein [Momordica charantia])

HSP 1 Score: 262.3 bits (669), Expect = 2.3e-66
Identity = 114/134 (85.07%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MSKTDEPVVGVPFYVGNNAYQAGQIPPNAIFGDPQGVPIHQTMYRDTPAPFYCFYCGTPG 60
           MSK DEPVVG+P Y G+NAYQAGQIP NAI+GDPQGVPI QTM+RDTPAPFYC YCG  G
Sbjct: 1   MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSG 60

Query: 61  LTAVRSKLSSAAVVGCMMPFMLGVCFLFPSMDCLWHKYHYCPSCKEKVGEFEKLDRCAVM 120
           LT+VRSK+SSAAVVGCM+PFMLGVCFLFPSM+CLWHKYHYCP+CKEKVG+FEKLDRCAVM
Sbjct: 61  LTSVRSKISSAAVVGCMVPFMLGVCFLFPSMNCLWHKYHYCPNCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWRQESFALPA 135
           DPPHW Q SFALPA
Sbjct: 121 DPPHWTQPSFALPA 134

[Close]

BLAST of Sed0021477 vs. NCBI nr
Match: XP_038906445.1 (GSH-induced LITAF domain protein [Benincasa hispida])

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65
Identity = 115/134 (85.82%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MSKTDEPVVGVPFYVGNNAYQAGQIPPNAIFGDPQGVPIHQTMYRDTPAPFYCFYCGTPG 60
           MSK DEPVVG+P Y GNN YQAGQIP NAIFGDPQGVPI QTMYRDTPAPFYC YCG  G
Sbjct: 1   MSKNDEPVVGIPLYDGNNPYQAGQIPSNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSG 60

Query: 61  LTAVRSKLSSAAVVGCMMPFMLGVCFLFPSMDCLWHKYHYCPSCKEKVGEFEKLDRCAVM 120
           LT VRSK+SSAAVVGCM PF+LGVCFLFPSMDCLWHKYHYCPSCKEKVG+FEK+DRCAVM
Sbjct: 61  LTDVRSKISSAAVVGCMTPFLLGVCFLFPSMDCLWHKYHYCPSCKEKVGDFEKMDRCAVM 120

Query: 121 DPPHWRQESFALPA 135
           DPP+W Q SFALPA
Sbjct: 121 DPPNWTQPSFALPA 134

[Close]

BLAST of Sed0021477 vs. NCBI nr
Match: XP_004140553.1 (GSH-induced LITAF domain protein [Cucumis sativus] >KGN46422.1 hypothetical protein Csa_005550 [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65
Identity = 115/133 (86.47%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 1   MSKTDEPVVGVPFYVGNNAYQAGQIPPNAIFGDPQGVPIHQTMYRDTPAPFYCFYCGTPG 60
           MSK  EPVVGVP YVGNN YQAGQIPPNAIFGDP GVPI QTMYRDTPAPF C YCG  G
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTAVRSKLSSAAVVGCMMPFMLGVCFLFPSMDCLWHKYHYCPSCKEKVGEFEKLDRCAVM 120
           LT +RSK+SSAAVVGCMMPFMLGVCFL PSMDCLWHKYHYCPSCKEKVG+FEKLDRCAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWRQESFALP 134
           DPPHW Q S+ALP
Sbjct: 121 DPPHWTQPSYALP 133

[Close]

BLAST of Sed0021477 vs. ExPASy Swiss-Prot
Match: Q94CD4 (GSH-induced LITAF domain protein OS=Arabidopsis thaliana OX=3702 GN=GILP PE=1 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 8.7e-53
Identity = 91/134 (67.91%), Postives = 102/134 (76.12%), Query Frame = 0


Query: 1   MSKTDEPVVGVPFYVGNNAYQAGQIPPNAIFGDPQGVPIHQTMYRDTPAPFYCFYCGTPG 60
           M+K    V+GVP+Y G N YQAG +PPNAI+GDP G PI QT+YRDTPAPF C YCG  G
Sbjct: 1   MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTG 60

Query: 61  LTAVRSKLSSAAVVGCMMPFMLGVCFLFPSMDCLWHKYHYCPSCKEKVGEFEKLDRCAVM 120
           LT +RSK   AAVV CMMPFMLG CFL PSMDCLW+K H+CP C  KV +FEK D C VM
Sbjct: 61  LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVM 120

Query: 121 DPPHWRQESFALPA 135
           DPP W+Q SFALPA
Sbjct: 121 DPPQWKQPSFALPA 134

[Close]

BLAST of Sed0021477 vs. ExPASy TrEMBL
Match: A0A6J1GS01 (GSH-induced LITAF domain protein OS=Cucurbita moschata OX=3662 GN=LOC111456579 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 8.4e-67
Identity = 116/134 (86.57%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MSKTDEPVVGVPFYVGNNAYQAGQIPPNAIFGDPQGVPIHQTMYRDTPAPFYCFYCGTPG 60
           MSK DEPVVG+PFYVGNNAYQAGQIPPNAIFG PQGVPIHQTMYRDTPAP+ C YCG  G
Sbjct: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60

Query: 61  LTAVRSKLSSAAVVGCMMPFMLGVCFLFPSMDCLWHKYHYCPSCKEKVGEFEKLDRCAVM 120
           LT++RSK+S AAVVGCMMPFMLGVCFL PSMDCLWHKYHYCPSCKEKVG+FEK D CAVM
Sbjct: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120

Query: 121 DPPHWRQESFALPA 135
           DPPHW Q SFALPA
Sbjct: 121 DPPHWTQPSFALPA 134

[Close]

BLAST of Sed0021477 vs. ExPASy TrEMBL
Match: A0A6J1JVN9 (GSH-induced LITAF domain protein OS=Cucurbita maxima OX=3661 GN=LOC111488277 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.1e-66
Identity = 115/134 (85.82%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MSKTDEPVVGVPFYVGNNAYQAGQIPPNAIFGDPQGVPIHQTMYRDTPAPFYCFYCGTPG 60
           MSK DEPVVG+PFYVGNN+YQAGQIPPNAIFG PQGVPIHQTMYRDTPAP+ C YCG  G
Sbjct: 1   MSKNDEPVVGIPFYVGNNSYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60

Query: 61  LTAVRSKLSSAAVVGCMMPFMLGVCFLFPSMDCLWHKYHYCPSCKEKVGEFEKLDRCAVM 120
           LT++RSK+S AAVVGCMMPFMLGVCFL PSMDCLWHKYHYCPSCKEKVG+FEK D CAVM
Sbjct: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDACAVM 120

Query: 121 DPPHWRQESFALPA 135
           DPPHW Q SFALPA
Sbjct: 121 DPPHWTQPSFALPA 134

[Close]

BLAST of Sed0021477 vs. ExPASy TrEMBL
Match: A0A6J1D5M9 (GSH-induced LITAF domain protein OS=Momordica charantia OX=3673 GN=LOC111017509 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.1e-66
Identity = 114/134 (85.07%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MSKTDEPVVGVPFYVGNNAYQAGQIPPNAIFGDPQGVPIHQTMYRDTPAPFYCFYCGTPG 60
           MSK DEPVVG+P Y G+NAYQAGQIP NAI+GDPQGVPI QTM+RDTPAPFYC YCG  G
Sbjct: 1   MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSG 60

Query: 61  LTAVRSKLSSAAVVGCMMPFMLGVCFLFPSMDCLWHKYHYCPSCKEKVGEFEKLDRCAVM 120
           LT+VRSK+SSAAVVGCM+PFMLGVCFLFPSM+CLWHKYHYCP+CKEKVG+FEKLDRCAVM
Sbjct: 61  LTSVRSKISSAAVVGCMVPFMLGVCFLFPSMNCLWHKYHYCPNCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWRQESFALPA 135
           DPPHW Q SFALPA
Sbjct: 121 DPPHWTQPSFALPA 134

[Close]

BLAST of Sed0021477 vs. ExPASy TrEMBL
Match: A0A0A0KDG7 (LITAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G091950 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.1e-66
Identity = 115/133 (86.47%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 1   MSKTDEPVVGVPFYVGNNAYQAGQIPPNAIFGDPQGVPIHQTMYRDTPAPFYCFYCGTPG 60
           MSK  EPVVGVP YVGNN YQAGQIPPNAIFGDP GVPI QTMYRDTPAPF C YCG  G
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTAVRSKLSSAAVVGCMMPFMLGVCFLFPSMDCLWHKYHYCPSCKEKVGEFEKLDRCAVM 120
           LT +RSK+SSAAVVGCMMPFMLGVCFL PSMDCLWHKYHYCPSCKEKVG+FEKLDRCAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWRQESFALP 134
           DPPHW Q S+ALP
Sbjct: 121 DPPHWTQPSYALP 133

[Close]

BLAST of Sed0021477 vs. ExPASy TrEMBL
Match: A0A5D3DMB0 (Zf-LITAF-like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002020 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 9.3e-66
Identity = 115/133 (86.47%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 1   MSKTDEPVVGVPFYVGNNAYQAGQIPPNAIFGDPQGVPIHQTMYRDTPAPFYCFYCGTPG 60
           MSK  EPVVGVP YVGNN YQAGQIPPNAIFGDPQGVPI QTMYRDTPAPF C YCG  G
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTAVRSKLSSAAVVGCMMPFMLGVCFLFPSMDCLWHKYHYCPSCKEKVGEFEKLDRCAVM 120
           LT +RSK+S AAVVGCMMPFMLGVCFL PSMDCLWHKYHYCPSCKEKVG+FEKLDRCAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWRQESFALP 134
           DPPHW Q S+ALP
Sbjct: 121 DPPHWTQPSYALP 133

[Close]

BLAST of Sed0021477 vs. TAIR 10
Match: AT5G13190.1 (CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 207.6 bits (527), Expect = 6.2e-54
Identity = 91/134 (67.91%), Postives = 102/134 (76.12%), Query Frame = 0


Query: 1   MSKTDEPVVGVPFYVGNNAYQAGQIPPNAIFGDPQGVPIHQTMYRDTPAPFYCFYCGTPG 60
           M+K    V+GVP+Y G N YQAG +PPNAI+GDP G PI QT+YRDTPAPF C YCG  G
Sbjct: 1   MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTG 60

Query: 61  LTAVRSKLSSAAVVGCMMPFMLGVCFLFPSMDCLWHKYHYCPSCKEKVGEFEKLDRCAVM 120
           LT +RSK   AAVV CMMPFMLG CFL PSMDCLW+K H+CP C  KV +FEK D C VM
Sbjct: 61  LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVM 120

Query: 121 DPPHWRQESFALPA 135
           DPP W+Q SFALPA
Sbjct: 121 DPPQWKQPSFALPA 134

The following BLAST results are available for this feature:

BLAST of Sed0021477 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954275.1	1.7e-66	86.57	GSH-induced LITAF domain protein [Cucurbita moschata] >XP_023547364.1 GSH-induce...	[more]
XP_022991744.1	2.3e-66	85.82	GSH-induced LITAF domain protein [Cucurbita maxima]	[more]
XP_022148974.1	2.3e-66	85.07	GSH-induced LITAF domain protein [Momordica charantia]	[more]
XP_038906445.1	1.1e-65	85.82	GSH-induced LITAF domain protein [Benincasa hispida]	[more]
XP_004140553.1	1.5e-65	86.47	GSH-induced LITAF domain protein [Cucumis sativus] >KGN46422.1 hypothetical prot...	[more]

BLAST of Sed0021477 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CD4	8.7e-53	67.91	GSH-induced LITAF domain protein OS=Arabidopsis thaliana OX=3702 GN=GILP PE=1 SV...	[more]

BLAST of Sed0021477 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GS01	8.4e-67	86.57	GSH-induced LITAF domain protein OS=Cucurbita moschata OX=3662 GN=LOC111456579 P...	[more]
A0A6J1JVN9	1.1e-66	85.82	GSH-induced LITAF domain protein OS=Cucurbita maxima OX=3661 GN=LOC111488277 PE=...	[more]
A0A6J1D5M9	1.1e-66	85.07	GSH-induced LITAF domain protein OS=Momordica charantia OX=3673 GN=LOC111017509 ...	[more]
A0A0A0KDG7	7.1e-66	86.47	LITAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G091950 PE=3 ...	[more]
A0A5D3DMB0	9.3e-66	86.47	Zf-LITAF-like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Sed0021477 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13190.1	6.2e-54	67.91	CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (Inte...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006629	LPS-induced tumour necrosis factor alpha factor	SMART	SM00714	litaf	coord: 48..113 e-value: 1.0E-11 score: 54.9
IPR006629	LPS-induced tumour necrosis factor alpha factor	PFAM	PF10601	zf-LITAF-like	coord: 46..111 e-value: 1.4E-12 score: 47.7
IPR006629	LPS-induced tumour necrosis factor alpha factor	PROSITE	PS51837	LITAF	coord: 33..113 score: 11.149126
IPR037519	LITAF domain containing protein	PANTHER	PTHR23292	LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR	coord: 3..126
None	No IPR available	PANTHER	PTHR23292:SF37	BNAC09G43880D PROTEIN	coord: 3..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021477.1	Sed0021477.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding