Sed0021463 (gene) Chayote v1

Overview
NameSed0021463
Typegene
OrganismSechium edule (Chayote v1)
DescriptionType-2 metallothionein
LocationLG04: 26694396 .. 26695489 (-)
RNA-Seq ExpressionSed0021463
SyntenySed0021463
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTGCTGTGGTGGAAACTGTGGGTGCGGCTCCGCCTGCCAGTGCGGAAGCGGCTGTGGAGGGTGAGAAATCGCTAATCATTTATTCGTGTTTATGCGGGAAATGATTTCTTTCCATTTCGTTTTCATTTCTGTACCTAGATCGGTTTTGATTATCAAATTCTGAAAATGTGAAGAGAAAATTTTATTTGATTTCGGTTACAGAGGATATATATATATATATATAATCGCTTTGATCGGATTAATATTTGATTTGCAGATGCAAGATGTTCCCTGATGAGATCAACTTCTCAGCTGACTCCACCGCTGCCATCCACACCTTCCTTCTCGGTCTTGCTCCTCACAACATGATGTAACTTTCTCAAATTACCCTAAATTCTTTTCTTTCAAATCTCCTCCTTAATTAACCTAAATTCTATTCTCCTCTTCTCACAAAATAATTCTATTTTAAACCATCCGAACTCATTAATATATTTTATGCCAAATTATAAGTTTGGTCCAACAAAATTAGAGTTTAGTCTATGATTTTAAAGACTAGAATTTATTTAATTTGATCTTTATAATTTGATCATAGTCCTTCTAATCGTTTGCAGATTAAGTACATGGAGGTTGGTTATTCATGTATTAATGATTGTAATGTGAGTTAAGCCATTGATTGGACAAAAAAAAAATTACAATGATTAGATAGATAAAAACTAATATTTAAATTTTATGAAACAATAGAAAAAAAGAAAGAGACTAAATTCTAACTTTCTTACGAATATAATAACCAAATTTATAATTTACTATGCATTTTAATAGCCTATTATTATATATTATAAAAAAGTACCAGATAATATTCCTTACTATGACTTTATATTTGTTAATTTATTTAATTGCTATTTTAGAAAAATAACTATATTTCACTCATTTCTTTTAAAATATCATATTTTTATTTACTTTGTGATTTAACAAGTCTCTTAAATTTTTCTTGTTTCCCTTCAACTAACAGTAGTTTTTCATATCAGATCCTTTGAGGTTGCAGAGATGGGAGCCGAGAGCGGCTGCAAATGTGGCGACAATTGCACCTGCGATCCTTGCAACTGCAAATGA

mRNA sequence

ATGTCGTGCTGTGGTGGAAACTGTGGGTGCGGCTCCGCCTGCCAGTGCGGAAGCGGCTGTGGAGGATGCAAGATGTTCCCTGATGAGATCAACTTCTCAGCTGACTCCACCGCTGCCATCCACACCTTCCTTCTCGGTCTTGCTCCTCACAACATGATATCCTTTGAGGTTGCAGAGATGGGAGCCGAGAGCGGCTGCAAATGTGGCGACAATTGCACCTGCGATCCTTGCAACTGCAAATGA

Coding sequence (CDS)

ATGTCGTGCTGTGGTGGAAACTGTGGGTGCGGCTCCGCCTGCCAGTGCGGAAGCGGCTGTGGAGGATGCAAGATGTTCCCTGATGAGATCAACTTCTCAGCTGACTCCACCGCTGCCATCCACACCTTCCTTCTCGGTCTTGCTCCTCACAACATGATATCCTTTGAGGTTGCAGAGATGGGAGCCGAGAGCGGCTGCAAATGTGGCGACAATTGCACCTGCGATCCTTGCAACTGCAAATGA

Protein sequence

MSCCGGNCGCGSACQCGSGCGGCKMFPDEINFSADSTAAIHTFLLGLAPHNMISFEVAEMGAESGCKCGDNCTCDPCNCK
Homology
BLAST of Sed0021463 vs. NCBI nr
Match: BAD26571.1 (type-2 metallothionein [Citrullus lanatus])

HSP 1 Score: 135.2 bits (339), Expect = 2.5e-28
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 0

Query: 1  MSCCGGNCGCGSACQCGSGCGGCKMFPDEINFSADSTAAIHTFLLGLAPHNMISFEVAEM 60
          MSCCGGNCGCGS C+CGSGCGGCKMFPD ++FS ++TA I TF++G APH M SFEVAEM
Sbjct: 1  MSCCGGNCGCGSGCKCGSGCGGCKMFPD-MSFS-EATATIETFVVGFAPHKM-SFEVAEM 60

Query: 61 GAESGCKCGDNCTCDPCNCK 81
          GAE+GCKCGDNCTCDPCNCK
Sbjct: 61 GAENGCKCGDNCTCDPCNCK 77

BLAST of Sed0021463 vs. NCBI nr
Match: KAG6596409.1 (Metallothionein-like protein type 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027952.1 Metallothionein-like protein type 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.8 bits (338), Expect = 3.3e-28
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 0

Query: 1  MSCCGGNCGCGSACQCGSGCGGCKMFPDEINFSADSTAAIHTFLLGLAPHNMISFEVAEM 60
          MSCCGGNCGCGSAC+CG+GCGGCKMFPD ++FS ++TA I TF++GLAP  M SFEVAEM
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPD-VSFS-ETTATIETFVVGLAPQKM-SFEVAEM 60

Query: 61 GAESGCKCGDNCTCDPCNCK 81
          GAE+GCKCGDNCTCDPCNCK
Sbjct: 61 GAENGCKCGDNCTCDPCNCK 77

BLAST of Sed0021463 vs. NCBI nr
Match: XP_022949247.1 (metallothionein-like protein type 2 [Cucurbita moschata] >XP_022971579.1 metallothionein-like protein type 2 [Cucurbita maxima] >XP_023538679.1 metallothionein-like protein type 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.0 bits (336), Expect = 5.6e-28
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 0

Query: 1  MSCCGGNCGCGSACQCGSGCGGCKMFPDEINFSADSTAAIHTFLLGLAPHNMISFEVAEM 60
          MSCCGGNCGCGSAC+CG+GCGGCKMFPD ++FS ++TA I TF++GLAP  M SFEVAEM
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPD-MSFS-ETTATIETFVVGLAPQKM-SFEVAEM 60

Query: 61 GAESGCKCGDNCTCDPCNCK 81
          GAE+GCKCGDNCTCDPCNCK
Sbjct: 61 GAENGCKCGDNCTCDPCNCK 77

BLAST of Sed0021463 vs. NCBI nr
Match: WP_197429621.1 (hypothetical protein, partial [Myroides odoratus])

HSP 1 Score: 134.0 bits (336), Expect = 5.6e-28
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 0

Query: 1  MSCCGGNCGCGSACQCGSGCGGCKMFPDEINFSADSTAAIHTFLLGLAPHNMISFEVAEM 60
          MSCCGGNCGCGS C+CG+GCGGCKMFPD ++FS ++TA I TF++G APH M SFEVAEM
Sbjct: 8  MSCCGGNCGCGSGCKCGNGCGGCKMFPD-MSFS-EATATIETFVVGFAPHKM-SFEVAEM 67

Query: 61 GAESGCKCGDNCTCDPCNCK 81
          GAE+GCKCGDNCTCDPCNCK
Sbjct: 68 GAENGCKCGDNCTCDPCNCK 84

BLAST of Sed0021463 vs. NCBI nr
Match: XP_038906044.1 (metallothionein-like protein type 2 [Benincasa hispida])

HSP 1 Score: 132.1 bits (331), Expect = 2.1e-27
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 0

Query: 1  MSCCGGNCGCGSACQCGSGCGGCKMFPDEINFSADSTAAIHTFLLGLAPHNMISFEVAEM 60
          MSCCGGNCGCGS C+CGSGCGGCKMFPD ++FS ++TA I TF++G AP  M SFEVAEM
Sbjct: 1  MSCCGGNCGCGSGCKCGSGCGGCKMFPD-MSFS-ETTATIETFVVGFAPQKM-SFEVAEM 60

Query: 61 GAESGCKCGDNCTCDPCNCK 81
          GAE+GCKCGDNCTCDPCNCK
Sbjct: 61 GAENGCKCGDNCTCDPCNCK 77

BLAST of Sed0021463 vs. ExPASy Swiss-Prot
Match: P94029 (Metallothionein-like protein 2A OS=Oryza sativa subsp. japonica OX=39947 GN=MT2A PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.1e-21
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 0

Query: 1  MSCCGGNCGCGSACQCGSGCGGCKMFPDEINFSADSTAAIHTFLLGLAP-----HNMISF 60
          MSCCGGNCGCGS CQCGSGCGGCKM+P+     A+      T ++G+AP       + + 
Sbjct: 1  MSCCGGNCGCGSGCQCGSGCGGCKMYPE----MAEEVTTTQTVIMGVAPSKGHAEGLEAG 60

Query: 61 EVAEMGAESGCKCGDNCTCDPCNC 80
            A  GAE+GCKCGDNCTC+PCNC
Sbjct: 61 AAAGAGAENGCKCGDNCTCNPCNC 80

BLAST of Sed0021463 vs. ExPASy Swiss-Prot
Match: P30564 (Metallothionein-like protein type 2 OS=Ricinus communis OX=3988 GN=MTI PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-20
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 0

Query: 1  MSCCGGNCGCGSACQCGSGCGGCKMFPDEINFSADSTAAIHTFLLGLAPHNMISFEVAEM 60
          MSCCGGNCGCGS C+CG+GCGGCKM+PD ++FS  +T    T +LG+       FE  EM
Sbjct: 1  MSCCGGNCGCGSGCKCGNGCGGCKMYPD-MSFSEKTTT--ETLVLGVGAEK-AHFEGGEM 60

Query: 61 GA----ESGCKCGDNCTCDPCNCK 81
          G     E GCKCGDNCTC+PC CK
Sbjct: 61 GVVGAEEGGCKCGDNCTCNPCTCK 80

BLAST of Sed0021463 vs. ExPASy Swiss-Prot
Match: Q41657 (Metallothionein-like protein type 2 OS=Vicia faba OX=3906 GN=MTI PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.6e-20
Identity = 47/81 (58.02%), Postives = 62/81 (76.54%), Query Frame = 0

Query: 1  MSCCGGNCGCGSACQCGSGCGGCKMFPDEINFSADSTAAIHTFLLGLAPHNMISFEVAEM 60
          MSCCGGNCGCGS+C+CGSGCGGCKM+ D ++++  +T+   T ++G+       +E AEM
Sbjct: 1  MSCCGGNCGCGSSCKCGSGCGGCKMYAD-LSYTESTTS--ETLIMGVGSEK-AQYESAEM 60

Query: 61 GAES-GCKCGDNCTCDPCNCK 81
          GAE+ GCKCG NCTC+PC CK
Sbjct: 61 GAENDGCKCGANCTCNPCTCK 77

BLAST of Sed0021463 vs. ExPASy Swiss-Prot
Match: Q19LA2 (Metallothionein type 2b OS=Colocasia esculenta OX=4460 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.9e-20
Identity = 50/87 (57.47%), Postives = 58/87 (66.67%), Query Frame = 0

Query: 1  MSCCGGNCGCGSACQCGSGCGGCKMFPDEINFSAD-STAAIHTFLLGLAP--HNMISFEV 60
          MSCCGGNCGCGS CQCG+GCGGCKMFPD   F +D      HT +LG AP   ++  FE+
Sbjct: 1  MSCCGGNCGCGSGCQCGNGCGGCKMFPD---FGSDEKITTTHTLVLGFAPAKGSVEGFEM 60

Query: 61 AEMGAESGCKCGDNCT-----CDPCNC 80
              AE+ CKCG NC+     CDPCNC
Sbjct: 61 VAGAAENDCKCGSNCSCTDCRCDPCNC 84

BLAST of Sed0021463 vs. ExPASy Swiss-Prot
Match: Q39459 (Metallothionein-like protein 2 OS=Cicer arietinum OX=3827 PE=3 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 9.9e-20
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 0

Query: 1  MSCCGGNCGCGSACQCGSGCGGCKMFPDEINFSADSTAAIHTFLLGLAPHNMISFEVAEM 60
          MSCCGGNCGCGS+C+CGSGCGGCKM+PD ++++  +T+   T ++G+A      FE AEM
Sbjct: 1  MSCCGGNCGCGSSCKCGSGCGGCKMYPD-MSYTEQTTS--ETLVMGVA-SGKTQFEGAEM 60

Query: 61 G---AESGCKCGDNCTCDPCNCK 81
          G      GCKCG NCTC+PC CK
Sbjct: 61 GFGAENDGCKCGSNCTCNPCTCK 79

BLAST of Sed0021463 vs. ExPASy TrEMBL
Match: Q6I674 (Type-2 metallothionein OS=Citrullus lanatus OX=3654 GN=CLMT2 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 0

Query: 1  MSCCGGNCGCGSACQCGSGCGGCKMFPDEINFSADSTAAIHTFLLGLAPHNMISFEVAEM 60
          MSCCGGNCGCGS C+CGSGCGGCKMFPD ++FS ++TA I TF++G APH M SFEVAEM
Sbjct: 1  MSCCGGNCGCGSGCKCGSGCGGCKMFPD-MSFS-EATATIETFVVGFAPHKM-SFEVAEM 60

Query: 61 GAESGCKCGDNCTCDPCNCK 81
          GAE+GCKCGDNCTCDPCNCK
Sbjct: 61 GAENGCKCGDNCTCDPCNCK 77

BLAST of Sed0021463 vs. ExPASy TrEMBL
Match: A0A6J1I8Z4 (metallothionein-like protein type 2 OS=Cucurbita maxima OX=3661 GN=LOC111470252 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.7e-28
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 0

Query: 1  MSCCGGNCGCGSACQCGSGCGGCKMFPDEINFSADSTAAIHTFLLGLAPHNMISFEVAEM 60
          MSCCGGNCGCGSAC+CG+GCGGCKMFPD ++FS ++TA I TF++GLAP  M SFEVAEM
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPD-MSFS-ETTATIETFVVGLAPQKM-SFEVAEM 60

Query: 61 GAESGCKCGDNCTCDPCNCK 81
          GAE+GCKCGDNCTCDPCNCK
Sbjct: 61 GAENGCKCGDNCTCDPCNCK 77

BLAST of Sed0021463 vs. ExPASy TrEMBL
Match: A0A6J1GBI9 (metallothionein-like protein type 2 OS=Cucurbita moschata OX=3662 GN=LOC111452655 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.7e-28
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 0

Query: 1  MSCCGGNCGCGSACQCGSGCGGCKMFPDEINFSADSTAAIHTFLLGLAPHNMISFEVAEM 60
          MSCCGGNCGCGSAC+CG+GCGGCKMFPD ++FS ++TA I TF++GLAP  M SFEVAEM
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPD-MSFS-ETTATIETFVVGLAPQKM-SFEVAEM 60

Query: 61 GAESGCKCGDNCTCDPCNCK 81
          GAE+GCKCGDNCTCDPCNCK
Sbjct: 61 GAENGCKCGDNCTCDPCNCK 77

BLAST of Sed0021463 vs. ExPASy TrEMBL
Match: A0A6J1F8X2 (metallothionein-like protein type 2 B OS=Cucurbita moschata OX=3662 GN=LOC111441898 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 62/80 (77.50%), Postives = 72/80 (90.00%), Query Frame = 0

Query: 1  MSCCGGNCGCGSACQCGSGCGGCKMFPDEINFSADSTAAIHTFLLGLAPHNMISFEVAEM 60
          MSCCGGNCGCGSAC+CG+GCGGCKMFPD ++FS ++TA I TF++GLAP  M SFE +EM
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPD-MSFS-ETTATIETFVVGLAPQKM-SFEASEM 60

Query: 61 GAESGCKCGDNCTCDPCNCK 81
          GAE+GCKCGDNCTCDPCNCK
Sbjct: 61 GAENGCKCGDNCTCDPCNCK 77

BLAST of Sed0021463 vs. ExPASy TrEMBL
Match: A0A6J1J2S1 (metallothionein-like protein type 2 B OS=Cucurbita maxima OX=3661 GN=LOC111482153 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.7e-27
Identity = 61/80 (76.25%), Postives = 71/80 (88.75%), Query Frame = 0

Query: 1  MSCCGGNCGCGSACQCGSGCGGCKMFPDEINFSADSTAAIHTFLLGLAPHNMISFEVAEM 60
          MSCCGGNCGCGSAC+CG+GCGGCKMFPD ++FS ++TA I  F++GLAP  M SFE +EM
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPD-MSFS-ETTATIEIFVVGLAPQKM-SFEASEM 60

Query: 61 GAESGCKCGDNCTCDPCNCK 81
          GAE+GCKCGDNCTCDPCNCK
Sbjct: 61 GAENGCKCGDNCTCDPCNCK 77

BLAST of Sed0021463 vs. TAIR 10
Match: AT3G09390.1 (metallothionein 2A )

HSP 1 Score: 95.1 bits (235), Expect = 2.7e-20
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 0

Query: 1  MSCCGGNCGCGSACQCGSGCGGCKMFPDEINFSADSTAAIHTFLLGLAPHNMISFEV--- 60
          MSCCGGNCGCGS C+CG+GCGGCKM+PD + FS ++T    TF+LG+AP     +E    
Sbjct: 1  MSCCGGNCGCGSGCKCGNGCGGCKMYPD-LGFSGETTTT-ETFVLGVAPAMKNQYEASGE 60

Query: 61 AEMGAESGCKCGDNCTCDPCNCK 81
          +       CKCG +C CDPC CK
Sbjct: 61 SNNAENDACKCGSDCKCDPCTCK 81

BLAST of Sed0021463 vs. TAIR 10
Match: AT5G02380.1 (metallothionein 2B )

HSP 1 Score: 84.7 bits (208), Expect = 3.6e-17
Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = 0

Query: 1  MSCCGGNCGCGSACQCGSGCGGCKMFPDEINFSADSTAAIHTFLLGLAPHNMISFEVAE- 60
          MSCCGG+CGCGSAC+CG+GCGGCK +PD  N       A  T +LG+AP     +E +  
Sbjct: 1  MSCCGGSCGCGSACKCGNGCGGCKRYPDLEN------TATETLVLGVAPAMNSQYEASGE 60

Query: 61 --MGAESGCKCGDNCTCDPCNCK 81
            +     CKCG +C C+PC CK
Sbjct: 61 TFVAENDACKCGSDCKCNPCTCK 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
BAD26571.12.5e-2880.00type-2 metallothionein [Citrullus lanatus][more]
KAG6596409.13.3e-2880.00Metallothionein-like protein type 2, partial [Cucurbita argyrosperma subsp. soro... [more]
XP_022949247.15.6e-2880.00metallothionein-like protein type 2 [Cucurbita moschata] >XP_022971579.1 metallo... [more]
WP_197429621.15.6e-2878.75hypothetical protein, partial [Myroides odoratus][more]
XP_038906044.12.1e-2778.75metallothionein-like protein type 2 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
P940293.1e-2157.14Metallothionein-like protein 2A OS=Oryza sativa subsp. japonica OX=39947 GN=MT2A... [more]
P305642.0e-2059.52Metallothionein-like protein type 2 OS=Ricinus communis OX=3988 GN=MTI PE=3 SV=1[more]
Q416577.6e-2058.02Metallothionein-like protein type 2 OS=Vicia faba OX=3906 GN=MTI PE=2 SV=1[more]
Q19LA29.9e-2057.47Metallothionein type 2b OS=Colocasia esculenta OX=4460 PE=1 SV=1[more]
Q394599.9e-2057.83Metallothionein-like protein 2 OS=Cicer arietinum OX=3827 PE=3 SV=2[more]
Match NameE-valueIdentityDescription
Q6I6741.2e-2880.00Type-2 metallothionein OS=Citrullus lanatus OX=3654 GN=CLMT2 PE=2 SV=1[more]
A0A6J1I8Z42.7e-2880.00metallothionein-like protein type 2 OS=Cucurbita maxima OX=3661 GN=LOC111470252 ... [more]
A0A6J1GBI92.7e-2880.00metallothionein-like protein type 2 OS=Cucurbita moschata OX=3662 GN=LOC11145265... [more]
A0A6J1F8X21.7e-2777.50metallothionein-like protein type 2 B OS=Cucurbita moschata OX=3662 GN=LOC111441... [more]
A0A6J1J2S18.7e-2776.25metallothionein-like protein type 2 B OS=Cucurbita maxima OX=3661 GN=LOC11148215... [more]
Match NameE-valueIdentityDescription
AT3G09390.12.7e-2054.22metallothionein 2A [more]
AT5G02380.13.6e-1749.40metallothionein 2B [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000347Metallothionein, family 15, plantPFAMPF01439Metallothio_2coord: 1..79
e-value: 1.2E-24
score: 87.0
IPR000347Metallothionein, family 15, plantPANTHERPTHR33543METALLOTHIONEIN-LIKE PROTEIN 2Acoord: 1..80
NoneNo IPR availablePANTHERPTHR33543:SF16METALLOTHIONEIN-LIKE PROTEIN TYPE 2coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0021463.1Sed0021463.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding