Sed0021359 (gene) Chayote v1

Overview


Name	Sed0021359
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RNA-binding protein 24 isoform X1
Location	LG10: 33155425 .. 33162296 (-)
RNA-Seq Expression	Sed0021359
Synteny	Sed0021359

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCTCTCTAGGCTGTAGAAAATTTCACGTCCGTATTACAAGAGGGTCTTTCTTGCCTCCCCCTCTCTCCCTATTCTTTATTTCAATTTCCACTTTAACCAAAAAAATAAAAAATATAATTTGCACTATATTTGCTGTCAAACTTTTGCTTTTCCTTCCTCTCCCTTCTTCTTCCCTTCCCATTTCACTTTCTCTTTTTTGTTGTTTTTCATATCTCTGACCTAATTCTCTCCATATCTCTCTTCTTCTCCAACCCTAACCCCCCAAACTCAAATCCTTCATAGATTTAGAGAAAACCCAAGAGATTTTAGAGCACTTGAAAATCAAGATCATGACTCCAGCTAACTTGGCAAGCCAGTTTGGAGACACAACTTACACCAAGGTTTTTGTGGGAGGCTTGGCTTGGGAGACTCACAAAGACACCATGAAGAAATATTTTGAACAGTTTGGCGACATCTTGGAAGCCGTCGTCATTACCGACAAGGCCACGGGTCGATCCAAAGGCTACGGATTCGTACGTCTCTCTCTACTTCTCCCCCTCATGCTACTACCTTTTTACCCCTTCTTTTATGCTTACGAGATTGTTCGGGTTTGTTTTAGGTCACGTTTCGGGAACCCGAGGCCGCGATGAGGGCTTGCGTCGATGCTGCGCCGGTCATCGATGGTCGGAGGGCTAATTGTAACCTTGCTTCTCTTGGTGTTCAGAGATCTAAACCCTCCACGCCTAAAAACGGTATATTGATTGCTCTTATTGGATTGTGATCAATTTAATTATATCAACTAACGCTGCTTACAACTTAGATCTACTACATGTTTTATTGGATAACCCAAGTTTTTTTGTTTTTTATCACAATAAGACAATGTAAAAGATGAAATATTTACCATCTTTTAGGCCCATGTAATTACTTTTTTGGAACAATGTAAATTATTTGATCCAAGAATTAATGAACGTAAAAGATCATTTAGACAAACCCACATGGTAGTTTTTCTATTTTAGGACTAACTAATTTAGGTTTTGAAATAAAGATACTTCATCATTAATAGGAAGAAAAGTTTATACAAATACAACCTATTCGTATGAACAAAAGTTATCATAGAACTTAAAAAGGATTCAATTTTTATATATTTCCAAAATTCAAGACTAAGTTTGAAGGTATCATCGAAAAATCCTAACATTACTTCCAAAACGGTTAGATCTCATCATCTATCTTCTCAAACAACTAGTTTACTGGTCTAAGTGCATACAATCTAAAAGAAATTTACTTAACAAAATAACTTTTACAATTTTTTTAATCGTCATACGGTGACGGTTGTTTCATAAAAATAATTGACGTAGGTACAAACGAGCGTAAACACTCATATTTGATGTTTCATTTTGTAAAAGCATGTAGTTAGTTAGTTGATATAATACATAATCTAAGATTTTGATTTTGATTTTTTTTTTTTTTGTGTGTTAAAGAGAAAAAGAAATGGGAATTAACAGGGGGAGGAGGGGGAAGAAATTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTGTCCAGCAAGGCATCCCTTACAATCTCTATGGGTAATTTTTATTTTTCCAATATTTATTACTTTAATTTATAATGTCACACTCTCTCAATATATATATATATATCATCATCATCATCATCATCATATGTTATATGTTATATGAATTGTTTTTTTACATTTTCTCTCTCTACAACGTGCTTTGCCAACCCATCTATTCACTTTATTTTCTTACATACAATAAAGTAATTTTTCCTTCTTCTTCACTCTTTTCATCTTCTGCATTTAATTCGCTTGCTTTTACTGCATGCATGCATTTATTTTTTATTTTTTATTTTTTTTATTTGTAATGTGTGTTTGTGTTAATTAATTGGAGGATTAGAACTAATTTGTTGTTAATTACTTTCTTGTTTATACTATTTTTAGGTACTCTTCGTATTCGCCCGACTACACTTACCCTACGGTTTGTAACTTCTATACTTTTATAGTTATTTTTAGCTCTCATTTTTGTTTAATCATTTTCCCTTTTATATCATTCAATTATAAAGAGTAATTATGCATGAAGAAGAATATAGAAAATCACGCATGAAAACAAAATTTAAAATTGTATTTTCGTTTATGTACTTTGATACACCTAATTTTAAATATTTAAGTTAGGTTTTGATATTTTAATAAATCTTAAAATTAGTTTTTATGATTTTTTTTTGTCAACCAATTTCATAACTTTAAACTTATCTTAGAAAATTAATTTTAAATTTTGTTGTAATTATAAAGATTAAAATTGGAATTTGTATGATACATAAATCAAAATGGAATATTATTTAAGTATATGAATCAAAAACCCAAGAGAAAACAAAGAGTTTTTTTTAATCAAAGATTTAAACTTCAATATGACCAAAATTCTCATTTTCCTACAAATATTTGTTGAAATTCTTTACCTTATCTCACTATTAAAAAAGTGAGAAATTTTCACCACATTTATATGTTATGTGGATGAATCTTTTTATTGTCAATCAATTTTATATCATCCAATGATATTACCGGATACAACATTTACAAAAAAAATTGAAATAAAAGGGTTTTTTACTATTGTTTTTTTTTTGTTTACCAATGTGTTACGTGGATGTTTATTTTTAATTGTGTTAGGTGGATGTTCATCTACCTACATTTGAAAATATAGACAAACAAATCGAATGAATGGATGTCGTAATTGGTTATCTAGTTTTGTGTTAATCTAGAGAATTTTACTCAAAAGAAAAAAAATATATTTATTTATTTATTTAGAGACAAAAAAGATGAAATTAAAAGGATGGTAAATGTTTTTTTTTTTTTTTTTTTTGAAAATGATGGTAAAATGTTATTATTCCTTGTGGTGTAAGAGAGAGGAGGCTATAATTGGAAATGAATTGAAATAAAAGAATCTGTATATTGTGTGGTCAAACTATTGAAAAGTGAAAGTTGAGAGACCCAATCTTAGGTTTACTCTTGTCGTTTTATCCGACAACTTTTCTTTCTCCATTTAATATGGTAACAGTAAATTACTTTAATATTTTTTTATGCTTAATATTAGTTTTTTTTTTTTTTTTGTACAGTTTTTTCGTTACACGGTCTTTCATGCACATGATCATGAAACTGCTGACTACAAGCCGACCACTTTAGAATATAATTTTTCTGAACATAAACACCTTTCATTCAGAATGCAACAGTCACTCACATACATTTTTTTTTTTTTAAAGACAACTCATTTGATGACTTTTCTTTTTTAAAATTATTCTCAAGAAAGTAGATAAGTACTAATTATATTTAAAAATTCAAATACATTTTTAAAAAAAATTTCGTTAAATTGACTCTTTTCACAAAATAAATATAAATATTCACAAATTTTGAAGTATTTACATTTATAATTATTAATACTGTATTATAAATATTTATTAATAGAATAGTGTGTATTAATAATAGAGTATTAGGTGTTATTTAGAGAATTTGCACTGTATAACAACTTTTTTACCATAGCTTACAATTATAGCAATTTTTAAAAAATAATTTGTTTGTAGCAAATTCTACCTATTTTTTAAAAAATCTCTATTTACCCTTTTTTATCGAATAGTTTGATAGAATCTATCATTCTCCAATGATGGAAGTCTATCAATTTTATCGGTAATTGATTCTATCAGCCCTTAATAAAATCTAATAGAAGTCTATCAATTTACTTTATTTATTAGTAATCGATTCTATCGACCTCTATGGATAGAATATATCAATATAGAAGTCAACCAATTTACATGTTCTGTTATATGTGCAAATATTTTTATTATTGTTCTATTCATGGAATATTTAGCTCTTTTGTAATATACATGCAAAATACCTATTATTTAATATAATATTATAAAAAAGTATTATAAATATTAATGACTATAATTGTTATTTTATGAAGTGATTATATTTATAATTATTTTTTACGACTAATTTTACAATTTTTTTTAAAAAATTTGTTTAATTTTAAAAATCGTGGGTAAATTGTAAATATCCCAATAAAAAAAATATATAGAATAAATTAATCATGCTAGATTTAACTTTCAAATATAAAAAATAAAAGATCATCTTTCTCAAATTTTCAAACAAAATCGTGTTTTTTCATAACTAAAAAAGTATATATTTGTTATATGAGGAATTTCAATTTGTTTCAGAGCTATTACAATGTGTACGGCGGGGCAACGGCGCAGTACCCTATGTACGGCAGCAGCCACGGCGGAATTGTGAGTGGAGCTGCGGCGGCGGCGGCGGCGTTCTACCCGTATTTCCAATTCGGAGAGGGAAGCGGGGGCGGAGCGAACGGGTTCACCGCCGGTTCGGGTCAGCAAGGGTACGGGGCGGTTCAGTATCCTCATCATCTTTATCAATACTCAGCGGCGATTAATTCGAACGCGAACACGTTCCCTCAGCACTACGCTGCCCCACCAATGTCTATGCCTCCCACGCCACCCACTTTGCCATCAGGTTTGTGCTCTTTTTTCTTCAATCATTTTATTTTTACTTAACTATTTCTTAGTATCATGTTTTTATCTTCTTTTTTTTTCAGCTAATAATAGTTAAATAGTTGTTAATAGTATTGACACTAGATATATGATATGAATACTTAGGATGTGTTTGGGGCCCATTTATGGAAACGGTCGGATTGGTTATAATAACGCAACCGATGTTTGCCCTACCGTTTATTATAAACGGTGGTTATCTAAATATGCGTGCTCGTTTATCTAAACCTTATGTATATTACTTTTTGTTACATAATTACCCCTCAAACACAGTTTATCATAATCCTTGTTATAATAACTTGCCTCTCAAACACCATTTATAATAACTCATCGTTTATCATAATCGTCTATCTATCGTAACCAAACCGGTACCCCAAACACACTCTAAGAAATGAAAAATATTTAAGTTATACCATTCTATTTTCAAGAAAAGTAGTAATATATAGGATAAACCTAGACACCATGAAATGATATTAATATTAAAGAAAAGAAAAATATTTAGGTCATGCATCCACGTAATCTAATGTGAATCACAGTGACTCGTTACATAAGCGGGCATGAATATTAAAGTCATGCTTTGATATAACATAAATATTTCTCTAAAGAAAATTGGTTAAAGTTTTTCTTTTCTCTTTTGATTTTTTCTTTCATCTCATTATTTATCCCATATTCAAATATTGTAGTCTTCCAAATAGGTAAACTATAAACTATTCTTCTTATCACTTATTAATTTTGAGATAAATATTCACGCTATTTATTATAACTTACTGACTATTATGACATATCGACTTGCCTTTTTGTGGGAATGTGAAAGACGTACTAATATCTTTGACAGTGTTTTTTGCTATCCCACAGGCGTGACCATGGCTCTTCCAGCACCAATCCCACATCGCTAGAGAGACTCGACATCCGATCCCACATCGCCAAATTTCCCTCTCCAAAGTACCATTCAAAACCACCATTCCTTTCGCCCTAACCATGGTTCCATCTCTATCTCTCAAAATCTAACACCAATTTCATCCCATTAGCATATGGTGACCACAAAATTCCCATATGCTTCTGGCTACCAAATCCCAGCCCCACATCGGGTCTGGACCCAACCTCCAAAGTTGGAGCAAAATTCATGCATTGTCATTTTTTTCACTTTTGTAATGGGGTCAAAAACCCCAACTTTCAAGGCCATTAAGGGATTTTGGCCTTAAAAGTTGGCAAATTCTCTGCACATAGCCTCCTTTTAGTCTAAGCTATCAAGGGCTGATCCCCCTTTTTTTTTGTTGAGCCTAAGGAATGGCTCTCCTAAAAAAAACACTTCTCCATAATTGGGTTTGCAACAAAATTGTAAATTTCCTTCCAAAATAGCATGCCCTTTTTCAAAAACCATCTCAAGTTTTGGACTCAAAAAGCTAATCTTTTTCTCAACTTGATCATCATTAGCATCTTTGTCATTTGTAATTATATTTCAATTAGGAGTATTTTTAGAACAAAATTCTGATTTTAAAAGAATTGGTGGGGCAATGGATGCTCCCACCTTTTTCTAAAAATGTTTTCTTTTTCTTTTTTTCAAATTAATTTAGTATTAGTTTGACATATTCCTCTTGGGCTAAGGGGAGTAGTACTAAACTAAAACTTTTTTTTTTAATTCATTAACTCTTAAGCAAATTAATTAGTTTCTTGTAATTAAAATTCATTAACAATCGTGGTTGAGAACTTATGGGAGTTGCAACCTCGTTTATTTTTGGTAAGCCAAAGCACAAATATTGCTCTTGGTTTAACTTTTTTTTTTTTAATTGGTGCATTTAGGGTTTCATAATTAGAGATTTAGGATTAGGGTTTTTAATTAAGCATCCCATCATTTTGAGAGAGTTTCATTAATGGATATGGAGCTTCTCAAAATAAGCATTTTGCATGTGAGCCCTTGGGAGATATTTGGGTTCCCTTTGGCTTCTTCTTCACTAACCCTACCAACCATGGTTAGGACTAAGGTCATTTCTTCAATATTCCCATTGTACCCCTCTTCATCATCATCCAATCATCATCTTCCCATTTGTTTTCAATTTCTTTTTATGTGTCTGTTGTGTTCAAGGACTTTCTCTTCATGGAGTTGAGTGGACCTTGAAAACACTGTTTCTTTTTTTAATTAATTATGTCTGTAAAAGAAGAGCCTTTTCTTTTTATGGTTTGTAATGTAATCAGATGCTCTCTACTAAATTTCTTTTATATTTGGACTTCTCTACTAAGATTAAGTTCTTCATAACCTACCTCAATATTAGTTG

mRNA sequence

GGGCTCTCTAGGCTGTAGAAAATTTCACGTCCGTATTACAAGAGGGTCTTTCTTGCCTCCCCCTCTCTCCCTATTCTTTATTTCAATTTCCACTTTAACCAAAAAAATAAAAAATATAATTTGCACTATATTTGCTGTCAAACTTTTGCTTTTCCTTCCTCTCCCTTCTTCTTCCCTTCCCATTTCACTTTCTCTTTTTTGTTGTTTTTCATATCTCTGACCTAATTCTCTCCATATCTCTCTTCTTCTCCAACCCTAACCCCCCAAACTCAAATCCTTCATAGATTTAGAGAAAACCCAAGAGATTTTAGAGCACTTGAAAATCAAGATCATGACTCCAGCTAACTTGGCAAGCCAGTTTGGAGACACAACTTACACCAAGGTTTTTGTGGGAGGCTTGGCTTGGGAGACTCACAAAGACACCATGAAGAAATATTTTGAACAGTTTGGCGACATCTTGGAAGCCGTCGTCATTACCGACAAGGCCACGGGTCGATCCAAAGGCTACGGATTCGTCACGTTTCGGGAACCCGAGGCCGCGATGAGGGCTTGCGTCGATGCTGCGCCGGTCATCGATGGTCGGAGGGCTAATTGTAACCTTGCTTCTCTTGGTGTTCAGAGATCTAAACCCTCCACGCCTAAAAACGAGAAAAAGAAATGGGAATTAACAGGGGGAGGAGGGGGAAGAAATTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTGTCCAGCAAGGCATCCCTTACAATCTCTATGGGTACTCTTCGTATTCGCCCGACTACACTTACCCTACGAGCTATTACAATGTGTACGGCGGGGCAACGGCGCAGTACCCTATGTACGGCAGCAGCCACGGCGGAATTGTGAGTGGAGCTGCGGCGGCGGCGGCGGCGTTCTACCCGTATTTCCAATTCGGAGAGGGAAGCGGGGGCGGAGCGAACGGGTTCACCGCCGGTTCGGGTCAGCAAGGGTACGGGGCGGTTCAGTATCCTCATCATCTTTATCAATACTCAGCGGCGATTAATTCGAACGCGAACACGTTCCCTCAGCACTACGCTGCCCCACCAATGTCTATGCCTCCCACGCCACCCACTTTGCCATCAGGCGTGACCATGGCTCTTCCAGCACCAATCCCACATCGCTAGAGAGACTCGACATCCGATCCCACATCGCCAAATTTCCCTCTCCAAAGTACCATTCAAAACCACCATTCCTTTCGCCCTAACCATGGTTCCATCTCTATCTCTCAAAATCTAACACCAATTTCATCCCATTAGCATATGGTGACCACAAAATTCCCATATGCTTCTGGCTACCAAATCCCAGCCCCACATCGGGTCTGGACCCAACCTCCAAAGTTGGAGCAAAATTCATGCATTGTCATTTTTTTCACTTTTGTAATGGGGTCAAAAACCCCAACTTTCAAGGCCATTAAGGGATTTTGGCCTTAAAAGTTGGCAAATTCTCTGCACATAGCCTCCTTTTAGTCTAAGCTATCAAGGGCTGATCCCCCTTTTTTTTTGTTGAGCCTAAGGAATGGCTCTCCTAAAAAAAACACTTCTCCATAATTGGGTTTGCAACAAAATTGTAAATTTCCTTCCAAAATAGCATGCCCTTTTTCAAAAACCATCTCAAGTTTTGGACTCAAAAAGCTAATCTTTTTCTCAACTTGATCATCATTAGCATCTTTGTCATTTGTAATTATATTTCAATTAGGAGTATTTTTAGAACAAAATTCTGATTTTAAAAGAATTGGTGGGGCAATGGATGCTCCCACCTTTTTCTAAAAATGTTTTCTTTTTCTTTTTTTCAAATTAATTTAGTATTAGTTTGACATATTCCTCTTGGGCTAAGGGGAGTAGTACTAAACTAAAACTTTTTTTTTTAATTCATTAACTCTTAAGCAAATTAATTAGTTTCTTGTAATTAAAATTCATTAACAATCGTGGTTGAGAACTTATGGGAGTTGCAACCTCGTTTATTTTTGGTAAGCCAAAGCACAAATATTGCTCTTGGTTTAACTTTTTTTTTTTTAATTGGTGCATTTAGGGTTTCATAATTAGAGATTTAGGATTAGGGTTTTTAATTAAGCATCCCATCATTTTGAGAGAGTTTCATTAATGGATATGGAGCTTCTCAAAATAAGCATTTTGCATGTGAGCCCTTGGGAGATATTTGGGTTCCCTTTGGCTTCTTCTTCACTAACCCTACCAACCATGGTTAGGACTAAGGTCATTTCTTCAATATTCCCATTGTACCCCTCTTCATCATCATCCAATCATCATCTTCCCATTTGTTTTCAATTTCTTTTTATGTGTCTGTTGTGTTCAAGGACTTTCTCTTCATGGAGTTGAGTGGACCTTGAAAACACTGTTTCTTTTTTTAATTAATTATGTCTGTAAAAGAAGAGCCTTTTCTTTTTATGGTTTGTAATGTAATCAGATGCTCTCTACTAAATTTCTTTTATATTTGGACTTCTCTACTAAGATTAAGTTCTTCATAACCTACCTCAATATTAGTTG

Coding sequence (CDS)

ATGACTCCAGCTAACTTGGCAAGCCAGTTTGGAGACACAACTTACACCAAGGTTTTTGTGGGAGGCTTGGCTTGGGAGACTCACAAAGACACCATGAAGAAATATTTTGAACAGTTTGGCGACATCTTGGAAGCCGTCGTCATTACCGACAAGGCCACGGGTCGATCCAAAGGCTACGGATTCGTCACGTTTCGGGAACCCGAGGCCGCGATGAGGGCTTGCGTCGATGCTGCGCCGGTCATCGATGGTCGGAGGGCTAATTGTAACCTTGCTTCTCTTGGTGTTCAGAGATCTAAACCCTCCACGCCTAAAAACGAGAAAAAGAAATGGGAATTAACAGGGGGAGGAGGGGGAAGAAATTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTGTCCAGCAAGGCATCCCTTACAATCTCTATGGGTACTCTTCGTATTCGCCCGACTACACTTACCCTACGAGCTATTACAATGTGTACGGCGGGGCAACGGCGCAGTACCCTATGTACGGCAGCAGCCACGGCGGAATTGTGAGTGGAGCTGCGGCGGCGGCGGCGGCGTTCTACCCGTATTTCCAATTCGGAGAGGGAAGCGGGGGCGGAGCGAACGGGTTCACCGCCGGTTCGGGTCAGCAAGGGTACGGGGCGGTTCAGTATCCTCATCATCTTTATCAATACTCAGCGGCGATTAATTCGAACGCGAACACGTTCCCTCAGCACTACGCTGCCCCACCAATGTCTATGCCTCCCACGCCACCCACTTTGCCATCAGGCGTGACCATGGCTCTTCCAGCACCAATCCCACATCGCTAG

Protein sequence

MTPANLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKNEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVYGGATAQYPMYGSSHGGIVSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGAVQYPHHLYQYSAAINSNANTFPQHYAAPPMSMPPTPPTLPSGVTMALPAPIPHR

Homology

[Close]

BLAST of Sed0021359 vs. NCBI nr
Match: XP_022157230.1 (RNA-binding protein 24 isoform X1 [Momordica charantia])

HSP 1 Score: 537.7 bits (1384), Expect = 6.0e-149
Identity = 269/289 (93.08%), Postives = 279/289 (96.54%), Query Frame = 0


Query: 1   MTPANLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPANLA+QFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLATQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKNEKKKWELTGGGGGRN 120
           FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPK+EKKKWELTGGGGGRN
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180
           FRVLSSFQ+GFGGNVGSAFHS  TFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVYGG
Sbjct: 121 FRVLSSFQSGFGGNVGSAFHSAATFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180

Query: 181 ATAQYPMYGSSHGGIVSGAAAAAAAFYPYFQFGEGS-GGGANGFTAGSGQQGYGAVQYPH 240
           ATAQYPMYG+  GGI++GAAAAAAAFYPYFQFGEGS GGG NGFTAGSGQQG   VQYPH
Sbjct: 181 ATAQYPMYGTGPGGIMNGAAAAAAAFYPYFQFGEGSGGGGGNGFTAGSGQQGGYGVQYPH 240

Query: 241 HLYQYSAAINSNANTFPQHYAAPPMSMPPTPPTLPSGVTMALPAPIPHR 289
           HL+QYSAAINS+A +FPQHYAAPPMS+PPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 HLFQYSAAINSSATSFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 289

[Close]

BLAST of Sed0021359 vs. NCBI nr
Match: XP_022930178.1 (RNA-binding protein 38 isoform X1 [Cucurbita moschata] >XP_022974074.1 RNA-binding protein 38 isoform X1 [Cucurbita maxima])

HSP 1 Score: 537.3 bits (1383), Expect = 7.9e-149
Identity = 266/288 (92.36%), Postives = 275/288 (95.49%), Query Frame = 0


Query: 1   MTPANLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+N+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKNEKKKWELTGGGGGRN 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPK+EKKKWELTGGGGGRN
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180
           FRVLSSFQTGFGGNVGSAFHSTPTFPHYA+ QGIPYNLYGYSSYSPDY YPTSYYNVYGG
Sbjct: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 180

Query: 181 ATAQYPMYGSSHGGIVSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGAVQYPHH 240
           ATAQYPMYG+  GGI+SGAAAAAAAFYPYFQFGEGSGGGANGFT GSGQQGYG VQYPHH
Sbjct: 181 ATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYG-VQYPHH 240

Query: 241 LYQYSAAINSNANTFPQHYAAPPMSMPPTPPTLPSGVTMALPAPIPHR 289
           L QYSAA+NS   TFPQHYAAPPMS+PPTPPTLPSGVTMALP PIPHR
Sbjct: 241 LLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 287

[Close]

BLAST of Sed0021359 vs. NCBI nr
Match: KAG6592286.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 528.5 bits (1360), Expect = 3.7e-146
Identity = 264/288 (91.67%), Postives = 273/288 (94.79%), Query Frame = 0


Query: 1   MTPANLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+N+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKNEKKKWELTGGGGGRN 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPK+EKKKWELT GGGGRN
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT-GGGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180
           FRVLSSFQTGFGGNVGSAFHSTPTFPHYA+ QGIPYNLYGYSSYSPDY YPTSYYNVYGG
Sbjct: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 180

Query: 181 ATAQYPMYGSSHGGIVSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGAVQYPHH 240
           ATAQYPMY +  GGI+SGAAAAAAAFYPYFQFGEGSGGGANGFT GSGQQGYG VQYPHH
Sbjct: 181 ATAQYPMYSTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYG-VQYPHH 240

Query: 241 LYQYSAAINSNANTFPQHYAAPPMSMPPTPPTLPSGVTMALPAPIPHR 289
           L QYSAA+NS   TFPQHYAAPPMS+PPTPPTLPSGVTMALP PIPHR
Sbjct: 241 LLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 286

[Close]

BLAST of Sed0021359 vs. NCBI nr
Match: XP_023535742.1 (RNA-binding protein 38-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 528.5 bits (1360), Expect = 3.7e-146
Identity = 264/288 (91.67%), Postives = 273/288 (94.79%), Query Frame = 0


Query: 1   MTPANLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+N+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKNEKKKWELTGGGGGRN 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPK+EKKKWELT  GGGRN
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT--GGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180
           FRVLSSFQTGFGGNVGSAFHSTPTFPHYA+ QGIPYNLYGYSSYSPDY YPTSYYNVYGG
Sbjct: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 180

Query: 181 ATAQYPMYGSSHGGIVSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGAVQYPHH 240
           ATAQYPMYG+  GGI+SGAAAAAAAFYPYFQFGEGSGGGANGFT GSGQQGYG VQYPHH
Sbjct: 181 ATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYG-VQYPHH 240

Query: 241 LYQYSAAINSNANTFPQHYAAPPMSMPPTPPTLPSGVTMALPAPIPHR 289
           L QYSAA+NS   TFPQHYAAPPMS+PPTPPTLPSGVTMALP PIPHR
Sbjct: 241 LLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 285

[Close]

BLAST of Sed0021359 vs. NCBI nr
Match: XP_022930180.1 (RNA-binding protein 38 isoform X2 [Cucurbita moschata] >XP_022974075.1 RNA-binding protein 38 isoform X2 [Cucurbita maxima])

HSP 1 Score: 513.8 bits (1322), Expect = 9.3e-142
Identity = 257/282 (91.13%), Postives = 267/282 (94.68%), Query Frame = 0


Query: 1   MTPANLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+N+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKNEKKKWELTGGGGGRN 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPK+EKKKWELTGGGGGRN
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180
           FRVLSSFQTGFGGNVGSAFHSTPTFPHYA+ QGIPYNLYGYSSYSPDY YPTSYYNVYGG
Sbjct: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 180

Query: 181 ATAQYPMYGSSHGGIVSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGAVQYPHH 240
           ATAQYPMYG+  GGI+SGAAAAAAAFYPYFQFGEGSGGGANGFT GSGQQGYG VQYPHH
Sbjct: 181 ATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYG-VQYPHH 240

Query: 241 LYQYSAAINSNANTFPQHYAAPPMSMPPTPPTLPSGVTMALP 283
           L QYSAA+NS   TFPQHYAAPPMS+PPTPPTLPS V  A+P
Sbjct: 241 LLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS-VFFAIP 280

[Close]

BLAST of Sed0021359 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.3e-25
Identity = 103/277 (37.18%), Postives = 134/277 (48.38%), Query Frame = 0


Query: 2   TPANLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGF 61
           T  N+   FGDT  TKVFVGGLAW+THK+ M  +F ++GDILEAV+I+DK T RSKGYGF
Sbjct: 3   TSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62

Query: 62  VTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPST-------PKNEKKKWELTG 121
           VTF++ +AA RAC D+ P+I+GRRANCNLASLG +  K  T       PKN  +      
Sbjct: 63  VTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNRATPPHV 122

Query: 122 GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTSY 181
           G   + +     + +GF          T         Q +P+  YGY S    Y  P   
Sbjct: 123 GNHSQWY-----YPSGF----------TNQQHQQQNHQAVPF--YGYPS---AYVAPNMT 182

Query: 182 YNVYGGATAQYPMYGSSHGGIVSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGA 241
           +N   G      M G          +     +Y +  +    GGG     A S    +  
Sbjct: 183 FNQKVGYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMY----GGGRVMVGAASPMVPFYT 242

Query: 242 VQYPHHLYQYSAAINSNANTFPQHYAAPPMSMPPTPP 272
           V YP+H         S A  FPQ   + P+S   TPP
Sbjct: 243 V-YPYH--------QSQAIGFPQPSFSKPLSF-STPP 245

[Close]

BLAST of Sed0021359 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 4.8e-24
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 3   PANLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFV 62
           P+ +     DTT+TK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFV
Sbjct: 19  PSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 78

Query: 63  TFREPEAAMRACVDAAPVIDGRRANCNLASLGVQ 97
           T  +  AA RAC D  P+IDGR+AN NLA LG +
Sbjct: 79  TMADRAAADRACKDPNPIIDGRKANVNLAYLGAK 112

[Close]

BLAST of Sed0021359 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 6.3e-24
Identity = 53/85 (62.35%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAM 71
           DTT+TK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 30  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89

Query: 72  RACVDAAPVIDGRRANCNLASLGVQ 97
           RAC D  P+IDGR+AN NLA LG +
Sbjct: 90  RACKDPNPIIDGRKANVNLAYLGAK 114

[Close]

BLAST of Sed0021359 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.3e-23
Identity = 90/225 (40.00%), Postives = 107/225 (47.56%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAM 71
           DTT+TK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKNEKKKWELTGGGGGRNFRVLSSFQTGF 131
           RAC D  P+IDGR+AN NLA LG   +KP                         S QTGF
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG---AKP------------------------RSIQTGF 126

Query: 132 GGNVGS---AFHSTP--TFPHYAVQQG-------IPYNLYGYSSYSPDYTYPTSYYNVY- 191
              V     AF   P    PHY   Q        IP  +   +S   DYT  +  Y+ Y 
Sbjct: 127 TIGVQQLHPAFIQRPFGLTPHYVYPQAIIQPSVVIPTPVQSIASPYIDYTAASQAYSQYT 186

Query: 192 GGATAQYPMYGSSHGGIV--------------SGAAAAAAAFYPY 210
             A  QYP   S   G V              S  AA A AF  Y
Sbjct: 187 TAAYDQYPYAASPAAGFVGYGYTGAVQPPITASTPAAPATAFVQY 204

[Close]

BLAST of Sed0021359 vs. ExPASy Swiss-Prot
Match: Q6P8A7 (RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.9e-23
Identity = 83/201 (41.29%), Postives = 106/201 (52.74%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAM 71
           DTTYTK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKNEKKKWELTGGGGGRNFRVLSSFQTGF 131
           RAC D  P+IDGR+AN NLA LG   +KP                     R++   Q GF
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG---AKP---------------------RIM---QPGF 126

Query: 132 GGNVGSAFHSTPTFPHYAVQQGIP-YNLYGYSSYSPDYTYPTSYYNVYGGATAQYPMYGS 191
              V     +    P      GIP + +Y ++   P    P         +T+ Y  Y S
Sbjct: 127 AFGVQQIHPALIQRPF-----GIPAHYVYPHAFVQPGVVIP-HVQQAAAASTSPYIDYTS 174

Query: 192 SHGGIVSGAAAAAAAF--YPY 210
           +     S AAAAAAA+  YPY
Sbjct: 187 AAYAQYSAAAAAAAAYDQYPY 174

[Close]

BLAST of Sed0021359 vs. ExPASy TrEMBL
Match: A0A6J1DSJ0 (RNA-binding protein 24 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023991 PE=4 SV=1)

HSP 1 Score: 537.7 bits (1384), Expect = 2.9e-149
Identity = 269/289 (93.08%), Postives = 279/289 (96.54%), Query Frame = 0


Query: 1   MTPANLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPANLA+QFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLATQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKNEKKKWELTGGGGGRN 120
           FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPK+EKKKWELTGGGGGRN
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180
           FRVLSSFQ+GFGGNVGSAFHS  TFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVYGG
Sbjct: 121 FRVLSSFQSGFGGNVGSAFHSAATFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180

Query: 181 ATAQYPMYGSSHGGIVSGAAAAAAAFYPYFQFGEGS-GGGANGFTAGSGQQGYGAVQYPH 240
           ATAQYPMYG+  GGI++GAAAAAAAFYPYFQFGEGS GGG NGFTAGSGQQG   VQYPH
Sbjct: 181 ATAQYPMYGTGPGGIMNGAAAAAAAFYPYFQFGEGSGGGGGNGFTAGSGQQGGYGVQYPH 240

Query: 241 HLYQYSAAINSNANTFPQHYAAPPMSMPPTPPTLPSGVTMALPAPIPHR 289
           HL+QYSAAINS+A +FPQHYAAPPMS+PPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 HLFQYSAAINSSATSFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 289

[Close]

BLAST of Sed0021359 vs. ExPASy TrEMBL
Match: A0A6J1IGG9 (RNA-binding protein 38 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE=4 SV=1)

HSP 1 Score: 537.3 bits (1383), Expect = 3.8e-149
Identity = 266/288 (92.36%), Postives = 275/288 (95.49%), Query Frame = 0


Query: 1   MTPANLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+N+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKNEKKKWELTGGGGGRN 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPK+EKKKWELTGGGGGRN
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180
           FRVLSSFQTGFGGNVGSAFHSTPTFPHYA+ QGIPYNLYGYSSYSPDY YPTSYYNVYGG
Sbjct: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 180

Query: 181 ATAQYPMYGSSHGGIVSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGAVQYPHH 240
           ATAQYPMYG+  GGI+SGAAAAAAAFYPYFQFGEGSGGGANGFT GSGQQGYG VQYPHH
Sbjct: 181 ATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYG-VQYPHH 240

Query: 241 LYQYSAAINSNANTFPQHYAAPPMSMPPTPPTLPSGVTMALPAPIPHR 289
           L QYSAA+NS   TFPQHYAAPPMS+PPTPPTLPSGVTMALP PIPHR
Sbjct: 241 LLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 287

[Close]

BLAST of Sed0021359 vs. ExPASy TrEMBL
Match: A0A6J1EUB1 (RNA-binding protein 38 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436682 PE=4 SV=1)

HSP 1 Score: 537.3 bits (1383), Expect = 3.8e-149
Identity = 266/288 (92.36%), Postives = 275/288 (95.49%), Query Frame = 0


Query: 1   MTPANLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+N+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKNEKKKWELTGGGGGRN 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPK+EKKKWELTGGGGGRN
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180
           FRVLSSFQTGFGGNVGSAFHSTPTFPHYA+ QGIPYNLYGYSSYSPDY YPTSYYNVYGG
Sbjct: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 180

Query: 181 ATAQYPMYGSSHGGIVSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGAVQYPHH 240
           ATAQYPMYG+  GGI+SGAAAAAAAFYPYFQFGEGSGGGANGFT GSGQQGYG VQYPHH
Sbjct: 181 ATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYG-VQYPHH 240

Query: 241 LYQYSAAINSNANTFPQHYAAPPMSMPPTPPTLPSGVTMALPAPIPHR 289
           L QYSAA+NS   TFPQHYAAPPMS+PPTPPTLPSGVTMALP PIPHR
Sbjct: 241 LLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 287

[Close]

BLAST of Sed0021359 vs. ExPASy TrEMBL
Match: A0A6J1ID09 (RNA-binding protein 38 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE=4 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 4.5e-142
Identity = 257/282 (91.13%), Postives = 267/282 (94.68%), Query Frame = 0


Query: 1   MTPANLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+N+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKNEKKKWELTGGGGGRN 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPK+EKKKWELTGGGGGRN
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180
           FRVLSSFQTGFGGNVGSAFHSTPTFPHYA+ QGIPYNLYGYSSYSPDY YPTSYYNVYGG
Sbjct: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 180

Query: 181 ATAQYPMYGSSHGGIVSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGAVQYPHH 240
           ATAQYPMYG+  GGI+SGAAAAAAAFYPYFQFGEGSGGGANGFT GSGQQGYG VQYPHH
Sbjct: 181 ATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYG-VQYPHH 240

Query: 241 LYQYSAAINSNANTFPQHYAAPPMSMPPTPPTLPSGVTMALP 283
           L QYSAA+NS   TFPQHYAAPPMS+PPTPPTLPS V  A+P
Sbjct: 241 LLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS-VFFAIP 280

[Close]

BLAST of Sed0021359 vs. ExPASy TrEMBL
Match: A0A6J1EW94 (RNA-binding protein 38 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436682 PE=4 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 4.5e-142
Identity = 257/282 (91.13%), Postives = 267/282 (94.68%), Query Frame = 0


Query: 1   MTPANLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+N+ASQFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKNEKKKWELTGGGGGRN 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPK+EKKKWELTGGGGGRN
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTSYYNVYGG 180
           FRVLSSFQTGFGGNVGSAFHSTPTFPHYA+ QGIPYNLYGYSSYSPDY YPTSYYNVYGG
Sbjct: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 180

Query: 181 ATAQYPMYGSSHGGIVSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGAVQYPHH 240
           ATAQYPMYG+  GGI+SGAAAAAAAFYPYFQFGEGSGGGANGFT GSGQQGYG VQYPHH
Sbjct: 181 ATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYG-VQYPHH 240

Query: 241 LYQYSAAINSNANTFPQHYAAPPMSMPPTPPTLPSGVTMALP 283
           L QYSAA+NS   TFPQHYAAPPMS+PPTPPTLPS V  A+P
Sbjct: 241 LLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPS-VFFAIP 280

[Close]

BLAST of Sed0021359 vs. TAIR 10
Match: AT1G33470.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-68
Identity = 154/272 (56.62%), Postives = 186/272 (68.38%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAM 71
           DTT+TKVFVGGLAWETHK +++ YFEQFGDI+EAVVITDK++GRSKGYGFVTF +PEAA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKNEKKKWELTGGGGGRNFRVLSSFQTGF 131
           +ACVD APVIDGRRANCNLA+ GVQRSKPS+P        + G  GGR  +V S F+T F
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSP--------IHGHVGGRGMKVTSPFKTHF 122

Query: 132 GGNVGSAFHSTPTFPHYAVQQGIPY-NLYGYSSYSPDYTYPTSYYNVYGGATAQYPMYGS 191
            G   +A  S   F HY     +PY N +G+SSYS DY YPTSYYNVYGGATAQ+PMYGS
Sbjct: 123 -GTAATAIPSPLPFSHYT----LPYTNPFGFSSYSMDYNYPTSYYNVYGGATAQHPMYGS 182

Query: 192 SHGGIVSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGAVQYPHHLYQYSAAINS 251
             G +   AAA AA FYPY QF EG+G             GY  + YP+H++ YSA    
Sbjct: 183 --GPMTGVAAAPAAGFYPYLQFAEGNG----------PVTGYAPLHYPNHMFHYSAP--- 242

Query: 252 NANTFPQHYAAPPMSMPPTPPTLPSGVTMALP 283
               +P H+   P+S+ P+ P +PS V  A+P
Sbjct: 243 -GGNYP-HHNGSPVSLAPS-PVIPS-VCFAVP 242

[Close]

BLAST of Sed0021359 vs. TAIR 10
Match: AT1G33470.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 253.1 bits (645), Expect = 2.8e-67
Identity = 154/273 (56.41%), Postives = 186/273 (68.13%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAM 71
           DTT+TKVFVGGLAWETHK +++ YFEQFGDI+EAVVITDK++GRSKGYGFVTF +PEAA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKNEKKKWELTGGGGGRNFRVLSSFQTGF 131
           +ACVD APVIDGRRANCNLA+ GVQRSKPS+P        + G  GGR  +V S F+T F
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSP--------IHGHVGGRGMKVTSPFKTHF 122

Query: 132 GGNVGSAFHSTPTFPHYAVQQGIPY-NLYGYSSYSPDYTYPT-SYYNVYGGATAQYPMYG 191
            G   +A  S   F HY     +PY N +G+SSYS DY YPT SYYNVYGGATAQ+PMYG
Sbjct: 123 -GTAATAIPSPLPFSHYT----LPYTNPFGFSSYSMDYNYPTQSYYNVYGGATAQHPMYG 182

Query: 192 SSHGGIVSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGAVQYPHHLYQYSAAIN 251
           S  G +   AAA AA FYPY QF EG+G             GY  + YP+H++ YSA   
Sbjct: 183 S--GPMTGVAAAPAAGFYPYLQFAEGNG----------PVTGYAPLHYPNHMFHYSAP-- 242

Query: 252 SNANTFPQHYAAPPMSMPPTPPTLPSGVTMALP 283
                +P H+   P+S+ P+ P +PS V  A+P
Sbjct: 243 --GGNYP-HHNGSPVSLAPS-PVIPS-VCFAVP 243

[Close]

BLAST of Sed0021359 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 232.3 bits (591), Expect = 5.0e-61
Identity = 149/263 (56.65%), Postives = 171/263 (65.02%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAA 70
           GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE EAA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKNEKKKWELTGGGGGR--NFRV-LSSF 130
             ACVDA PVIDGRRANCNLASLG+QRSKPSTP +         GGGGR  N RV +S+ 
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH---------GGGGRINNMRVMMSTM 127

Query: 131 QTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDY-TYPTSYYNVYGGAT-AQY 190
           QTGFG          PTF HY     +P NL+GYS YSPDY ++PT+ Y +YG  +  QY
Sbjct: 128 QTGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQY 187

Query: 191 PMYG--SSHGGIVSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGAVQYPHHLYQ 250
            +YG  +S GG ++ AAA+A  FYP        GGG  G      Q  Y      HHL  
Sbjct: 188 GVYGNRNSGGGGLTAAAASATPFYP-------CGGGHGGVQFSQPQPFY------HHLSS 232

Query: 251 YSAAINSNANTFPQHYAAPPMSM 267
           Y+          P HY+ P  SM
Sbjct: 248 YN----------PHHYSPPTFSM 232

[Close]

BLAST of Sed0021359 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 231.1 bits (588), Expect = 1.1e-60
Identity = 153/278 (55.04%), Postives = 176/278 (63.31%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAA 70
           GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE EAA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKNEKKKWELTGGGGGR--NFRV-LSSF 130
             ACVDA PVIDGRRANCNLASLG+QRSKPSTP +         GGGGR  N RV +S+ 
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH---------GGGGRINNMRVMMSTM 127

Query: 131 QTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDY-TYPTSYYNVYGGAT-AQY 190
           QTGFG          PTF HY     +P NL+GYS YSPDY ++PT+ Y +YG  +  QY
Sbjct: 128 QTGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQY 187

Query: 191 PMYG--SSHGGIVSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGAVQYPHHLYQ 250
            +YG  +S GG ++ AAA+A  FYP        GGG  G      Q  Y      HHL  
Sbjct: 188 GVYGNRNSGGGGLTAAAASATPFYP-------CGGGHGGVQFSQPQPFY------HHLSS 247

Query: 251 YSAAINSNANTFPQHYAAPPMSM-------PPTPPTLP 275
           Y+          P HY+ P  SM       P  PP +P
Sbjct: 248 YN----------PHHYSPPTFSMQQGVTGFPLQPPLIP 247

[Close]

BLAST of Sed0021359 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 227.3 bits (578), Expect = 1.6e-59
Identity = 152/282 (53.90%), Postives = 176/282 (62.41%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAA 70
           GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE EAA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKNEKKKWELTGGGGGR--NFRV-LSSF 130
             ACVDA PVIDGRRANCNLASLG+QRSKPSTP +         GGGGR  N RV +S+ 
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH---------GGGGRINNMRVMMSTM 127

Query: 131 QTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDY-TYPTSYYNVYGGAT-AQY 190
           QTGFG          PTF HY     +P NL+GYS YSPDY ++PT+ Y +YG  +  QY
Sbjct: 128 QTGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQY 187

Query: 191 PMYG--SSHGGIVSGAAAAAAAFYPYFQFGEGSGGGANGFTAGSGQQGYGAVQYPHHLYQ 250
            +YG  +S GG ++ AAA+A  FYP        GGG  G      Q  Y      HHL  
Sbjct: 188 GVYGNRNSGGGGLTAAAASATPFYP-------CGGGHGGVQFSQPQPFY------HHLSS 247

Query: 251 YSAAINSNANTFPQHYAAPPMSMPPTPPTLPSGVTMALPAPI 286
           Y+          P HY+ P  SM        S  T +   P+
Sbjct: 248 YN----------PHHYSPPTFSMQQGSRNRLSASTTSYSLPL 251

The following BLAST results are available for this feature:

BLAST of Sed0021359 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157230.1	6.0e-149	93.08	RNA-binding protein 24 isoform X1 [Momordica charantia]	[more]
XP_022930178.1	7.9e-149	92.36	RNA-binding protein 38 isoform X1 [Cucurbita moschata] >XP_022974074.1 RNA-bindi...	[more]
KAG6592286.1	3.7e-146	91.67	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023535742.1	3.7e-146	91.67	RNA-binding protein 38-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022930180.1	9.3e-142	91.13	RNA-binding protein 38 isoform X2 [Cucurbita moschata] >XP_022974075.1 RNA-bindi...	[more]

BLAST of Sed0021359 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	4.3e-25	37.18	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q62176	4.8e-24	57.45	RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2	[more]
Q9H0Z9	6.3e-24	62.35	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]
Q5ZJX4	5.3e-23	40.00	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]
Q6P8A7	6.9e-23	41.29	RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1	[more]

BLAST of Sed0021359 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSJ0	2.9e-149	93.08	RNA-binding protein 24 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023991...	[more]
A0A6J1IGG9	3.8e-149	92.36	RNA-binding protein 38 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE...	[more]
A0A6J1EUB1	3.8e-149	92.36	RNA-binding protein 38 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436682 ...	[more]
A0A6J1ID09	4.5e-142	91.13	RNA-binding protein 38 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE...	[more]
A0A6J1EW94	4.5e-142	91.13	RNA-binding protein 38 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436682 ...	[more]

BLAST of Sed0021359 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33470.2	1.1e-68	56.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G33470.1	2.8e-67	56.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.2	5.0e-61	56.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	1.1e-60	55.04	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	1.6e-59	53.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 e-value: 6.9E-22 score: 88.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..73 e-value: 1.2E-15 score: 57.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..100 score: 16.687742
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..111 e-value: 1.9E-23 score: 84.9
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..281
None	No IPR available	PANTHER	PTHR11176:SF16	OS01G0876800 PROTEIN	coord: 1..281
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 16..91 e-value: 3.84296E-41 score: 135.05
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 15..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021359.1	Sed0021359.1	mRNA
Sed0021359.2	Sed0021359.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding