Sed0020456 (gene) Chayote v1

Overview


Name	Sed0020456
Type	gene
Organism	Sechium edule (Chayote v1)
Description	SWIM-type domain-containing protein
Location	LG01: 9352530 .. 9353180 (+)
RNA-Seq Expression	Sed0020456
Synteny	Sed0020456

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCTGGTGCCTATACTTCATCCCGACCCTACTGCCCCCGTCGATACAAACCATCCCAAGCTGTGGCTGACAGGATTGTTCGAGCTCTCCACCATGACCTCCGTCTCCTCCACTGCTCCGATTCTACTTTCTATGTGTTGGGAGCCACAGGCAATGTCTACATCGTGTCTCTATCCTCAACCCCTGCGTGCAATTGCCCTGACCATATTACTCCATGTAAACACATACTGTTTGTTTACATTCGAGTCCTGGGCGTGTTGTTGGATGACGAATGCCTTCGGCGGAGAACACTTCTACCTTGCCAATTGAATCACTTGCTTGCTGCACCTGTTTTGCTTGAATCATTGGCTGAAATTGGTCTACGTAGAATATTTCATCAACAATTCTTTCATGTAAAGGAAAGGGCTTCTGTGATTGTGGTAGATATGGAAGATGGAACTACTTGTCCAGTTTGTTTGGATGATATGAAGAAGAAGGATCGGGTTGTGGCGTGTACGACATGTCGGAATATTGTTCACGAAGAGTGTTTCGCGAGGTGGAAACGAAGCAAGGGAAGGAGAACAGTTAGTTGCGTGGTGTGTAGGGCAAGGTGGGAAGATACAGCAACAGACCAACAAAAGTATTTGAATTTGTCTGCGTATGTTTGA

mRNA sequence

ATGGAATCTGGTGCCTATACTTCATCCCGACCCTACTGCCCCCGTCGATACAAACCATCCCAAGCTGTGGCTGACAGGATTGTTCGAGCTCTCCACCATGACCTCCGTCTCCTCCACTGCTCCGATTCTACTTTCTATGTGTTGGGAGCCACAGGCAATGTCTACATCGTGTCTCTATCCTCAACCCCTGCGTGCAATTGCCCTGACCATATTACTCCATGTAAACACATACTGTTTGTTTACATTCGAGTCCTGGGCGTGTTGTTGGATGACGAATGCCTTCGGCGGAGAACACTTCTACCTTGCCAATTGAATCACTTGCTTGCTGCACCTGTTTTGCTTGAATCATTGGCTGAAATTGGTCTACGTAGAATATTTCATCAACAATTCTTTCATGTAAAGGAAAGGGCTTCTGTGATTGTGGTAGATATGGAAGATGGAACTACTTGTCCAGTTTGTTTGGATGATATGAAGAAGAAGGATCGGGTTGTGGCGTGTACGACATGTCGGAATATTGTTCACGAAGAGTGTTTCGCGAGGTGGAAACGAAGCAAGGGAAGGAGAACAGTTAGTTGCGTGGTGTGTAGGGCAAGGTGGGAAGATACAGCAACAGACCAACAAAAGTATTTGAATTTGTCTGCGTATGTTTGA

Coding sequence (CDS)

ATGGAATCTGGTGCCTATACTTCATCCCGACCCTACTGCCCCCGTCGATACAAACCATCCCAAGCTGTGGCTGACAGGATTGTTCGAGCTCTCCACCATGACCTCCGTCTCCTCCACTGCTCCGATTCTACTTTCTATGTGTTGGGAGCCACAGGCAATGTCTACATCGTGTCTCTATCCTCAACCCCTGCGTGCAATTGCCCTGACCATATTACTCCATGTAAACACATACTGTTTGTTTACATTCGAGTCCTGGGCGTGTTGTTGGATGACGAATGCCTTCGGCGGAGAACACTTCTACCTTGCCAATTGAATCACTTGCTTGCTGCACCTGTTTTGCTTGAATCATTGGCTGAAATTGGTCTACGTAGAATATTTCATCAACAATTCTTTCATGTAAAGGAAAGGGCTTCTGTGATTGTGGTAGATATGGAAGATGGAACTACTTGTCCAGTTTGTTTGGATGATATGAAGAAGAAGGATCGGGTTGTGGCGTGTACGACATGTCGGAATATTGTTCACGAAGAGTGTTTCGCGAGGTGGAAACGAAGCAAGGGAAGGAGAACAGTTAGTTGCGTGGTGTGTAGGGCAAGGTGGGAAGATACAGCAACAGACCAACAAAAGTATTTGAATTTGTCTGCGTATGTTTGA

Protein sequence

MESGAYTSSRPYCPRRYKPSQAVADRIVRALHHDLRLLHCSDSTFYVLGATGNVYIVSLSSTPACNCPDHITPCKHILFVYIRVLGVLLDDECLRRRTLLPCQLNHLLAAPVLLESLAEIGLRRIFHQQFFHVKERASVIVVDMEDGTTCPVCLDDMKKKDRVVACTTCRNIVHEECFARWKRSKGRRTVSCVVCRARWEDTATDQQKYLNLSAYV

Homology

[Close]

BLAST of Sed0020456 vs. NCBI nr
Match: XP_038885291.1 (uncharacterized protein LOC120075728 [Benincasa hispida])

HSP 1 Score: 357.1 bits (915), Expect = 1.1e-94
Identity = 172/216 (79.63%), Postives = 192/216 (88.89%), Query Frame = 0


Query: 1   MESGAYTSSRPYCPRRYKPSQAVADRIVRALHHDLRLLHCSDSTFYVLGATGNVYIVSLS 60
           MES A TSS  + P R+KPS AVADRIVRALHH LRLLH S S F+VLGATGNVYIVSLS
Sbjct: 29  MESVASTSSLQHVP-RFKPSPAVADRIVRALHHHLRLLHRSGSNFFVLGATGNVYIVSLS 88

Query: 61  STPACNCPDHITPCKHILFVYIRVLGVLLDDECLRRRTLLPCQLNHLLAAPVLLESLAEI 120
           STP+C CPD ITPCKHILF+Y++ LG+ LDD CLRRRTL PCQLN LLAAP++L+SLAE+
Sbjct: 89  STPSCTCPDRITPCKHILFIYLQALGLSLDDTCLRRRTLRPCQLNRLLAAPIMLKSLAEV 148

Query: 121 GLRRIFHQQFFHVKERASVIVVDMEDGTTCPVCLDDMKKKDRVVACTTCRNIVHEECFAR 180
           GLR +FHQQFF VKERASV VVDMEDGTTCPVCLDDMKKKDRVVAC+TCRN+VHE+CF+R
Sbjct: 149 GLRDVFHQQFFQVKERASVTVVDMEDGTTCPVCLDDMKKKDRVVACSTCRNLVHEDCFSR 208

Query: 181 WKRSKGRRTVSCVVCRARWEDTATDQQKYLNLSAYV 217
           WKRSKGRR+VSCVVCRARW+D   DQQKYLNLSAY+
Sbjct: 209 WKRSKGRRSVSCVVCRARWKD-RKDQQKYLNLSAYI 242

[Close]

BLAST of Sed0020456 vs. NCBI nr
Match: XP_004148392.1 (mitogen-activated protein kinase kinase kinase 1 [Cucumis sativus])

HSP 1 Score: 347.1 bits (889), Expect = 1.1e-91
Identity = 168/223 (75.34%), Postives = 189/223 (84.75%), Query Frame = 0


Query: 1   MESGAYTSSRPYCPRRYKPSQAVADRIVRALHHDLRLLHCSDSTFYVLGATGNVYIVSLS 60
           MES A TSS P+   R+KPSQ VADRIVRALHH LRLLH S S F+VLGATGNVYIVSLS
Sbjct: 1   MESVASTSS-PHSVPRFKPSQPVADRIVRALHHHLRLLHRSGSNFFVLGATGNVYIVSLS 60

Query: 61  STPACNCPDHITPCKHILFVYIRVLGVLLDDECLRRRTLLPCQLNHLLAAPVLLESLAEI 120
           STP+C CPD ITPCKHILF+Y++ LG+ LDD CLRRRTL PCQLN LLAAP++L+SLAEI
Sbjct: 61  STPSCTCPDRITPCKHILFIYLQALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLKSLAEI 120

Query: 121 GLRRIFHQQFFHVKERA-------SVIVVDMEDGTTCPVCLDDMKKKDRVVACTTCRNIV 180
           GLR++FHQQFF V +RA       SV V DMEDG+ CPVCLDDMKKKDRVVAC+TCRN+V
Sbjct: 121 GLRKVFHQQFFQVNDRAASSSSSSSVTVEDMEDGSACPVCLDDMKKKDRVVACSTCRNLV 180

Query: 181 HEECFARWKRSKGRRTVSCVVCRARWEDTATDQQKYLNLSAYV 217
           HE+CF RWKRSKGRR VSCVVCRARW+DT  +QQKYLNLSAY+
Sbjct: 181 HEDCFTRWKRSKGRRNVSCVVCRARWKDTKDEQQKYLNLSAYI 222

[Close]

BLAST of Sed0020456 vs. NCBI nr
Match: XP_022131540.1 (uncharacterized protein LOC111004703 [Momordica charantia])

HSP 1 Score: 344.0 bits (881), Expect = 9.6e-91
Identity = 169/222 (76.13%), Postives = 189/222 (85.14%), Query Frame = 0


Query: 1   MESGAYTSSRPYCPR----RYKPSQAVADRIVRALHHDLRLLHCSDSTFYVLGATGNVYI 60
           MES A TSS P  PR    R+KPSQAVADRIVRALHH LRLLH SDS F+VLGATGNVYI
Sbjct: 27  MESVASTSSPPRRPRLHLTRFKPSQAVADRIVRALHHHLRLLHRSDSNFFVLGATGNVYI 86

Query: 61  VSLSSTPACNCPDHITPCKHILFVYIRVLGVLLDDECLRRRTLLPCQLNHLLAAPVLLES 120
           VSLS+TP+C+CPD ITPCKHILF+YIR LGV LDD CLRRRTL PC LN LL AP++LES
Sbjct: 87  VSLSTTPSCSCPDRITPCKHILFIYIRALGVSLDDACLRRRTLRPCHLNRLLTAPIMLES 146

Query: 121 LAEIGLRRIFHQQFFHVKERASVIVVDMEDGTTCPVCLDDMKK--KDRVVACTTCRNIVH 180
           +A IG+RR+FHQ+FF VK RAS  VVD+EDGTTCPVCLD+MKK   DRVVAC TCRN+VH
Sbjct: 147 VAAIGVRRVFHQRFFQVKGRASASVVDVEDGTTCPVCLDEMKKDDSDRVVACMTCRNVVH 206

Query: 181 EECFARWKRSKGRRTVSCVVCRARWEDTATDQQKYLNLSAYV 217
           E+CF RWKRSKGRR+VSCVVCRARW DT + Q+KYLNLSAY+
Sbjct: 207 EDCFLRWKRSKGRRSVSCVVCRARWRDT-SGQEKYLNLSAYI 247

[Close]

BLAST of Sed0020456 vs. NCBI nr
Match: XP_023546870.1 (uncharacterized protein LOC111805851 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 340.9 bits (873), Expect = 8.1e-90
Identity = 172/221 (77.83%), Postives = 190/221 (85.97%), Query Frame = 0


Query: 1   MESGAYTSSR-PYCPR----RYKPSQAVADRIVRALHHDLRLLHCSDSTFYVLGATGNVY 60
           MES A TSS  P  PR    R+KPSQAVADRIVRALHH L LL+ S+S F+VLGATGNVY
Sbjct: 1   MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVY 60

Query: 61  IVSLSSTPACNCPDHITPCKHILFVYIRVLGVLLDDECLRRRTLLPCQLNHLLAAPVLLE 120
           IVSLSSTP+C CPD ITPCKHILF+YIR LG+ LDD CLRRRTL PCQLN LLAAP++LE
Sbjct: 61  IVSLSSTPSCTCPDRITPCKHILFIYIRALGMSLDDVCLRRRTLRPCQLNRLLAAPIILE 120

Query: 121 SLAEIGLRRIFHQQFFHVKERASVIVVDMEDGTTCPVCLDDMKKKDRVVACTTCRNIVHE 180
           SLAEIG+RRIFHQQFF VKER S   V +E+GT CPVCLDDMKK DRVVAC+TCRN+VHE
Sbjct: 121 SLAEIGIRRIFHQQFFQVKERGSSANV-VEEGTACPVCLDDMKKNDRVVACSTCRNLVHE 180

Query: 181 ECFARWKRSKGRRTVSCVVCRARWEDTATDQQKYLNLSAYV 217
           +CF+RWKRSKGRR VSCVVCRARW++T TDQQKYLNLSAYV
Sbjct: 181 DCFSRWKRSKGRRRVSCVVCRARWKET-TDQQKYLNLSAYV 219

[Close]

BLAST of Sed0020456 vs. NCBI nr
Match: XP_023521856.1 (uncharacterized protein LOC111785706 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 340.9 bits (873), Expect = 8.1e-90
Identity = 172/221 (77.83%), Postives = 190/221 (85.97%), Query Frame = 0


Query: 1   MESGAYTSSR-PYCPR----RYKPSQAVADRIVRALHHDLRLLHCSDSTFYVLGATGNVY 60
           MES A TSS  P  PR    R+KPSQAVADRIVRALHH L LL+ S+S F+VLGATGNVY
Sbjct: 1   MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVY 60

Query: 61  IVSLSSTPACNCPDHITPCKHILFVYIRVLGVLLDDECLRRRTLLPCQLNHLLAAPVLLE 120
           IVSLSSTP+C CPD ITPCKHILF+YIR LG+ LDD CLRRRTL PCQLN LLAAP++LE
Sbjct: 61  IVSLSSTPSCTCPDRITPCKHILFIYIRALGMSLDDVCLRRRTLRPCQLNRLLAAPIILE 120

Query: 121 SLAEIGLRRIFHQQFFHVKERASVIVVDMEDGTTCPVCLDDMKKKDRVVACTTCRNIVHE 180
           SLAEIG+RRIFHQQFF VKER S   V +E+GT CPVCLDDMKK DRVVAC+TCRN+VHE
Sbjct: 121 SLAEIGIRRIFHQQFFQVKERGSSANV-VEEGTACPVCLDDMKKNDRVVACSTCRNLVHE 180

Query: 181 ECFARWKRSKGRRTVSCVVCRARWEDTATDQQKYLNLSAYV 217
           +CF+RWKRSKGRR VSCVVCRARW++T TDQQKYLNLSAYV
Sbjct: 181 DCFSRWKRSKGRRRVSCVVCRARWKET-TDQQKYLNLSAYV 219

[Close]

BLAST of Sed0020456 vs. ExPASy TrEMBL
Match: A0A0A0LS10 (SWIM-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G373540 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 5.5e-92
Identity = 168/223 (75.34%), Postives = 189/223 (84.75%), Query Frame = 0


Query: 1   MESGAYTSSRPYCPRRYKPSQAVADRIVRALHHDLRLLHCSDSTFYVLGATGNVYIVSLS 60
           MES A TSS P+   R+KPSQ VADRIVRALHH LRLLH S S F+VLGATGNVYIVSLS
Sbjct: 1   MESVASTSS-PHSVPRFKPSQPVADRIVRALHHHLRLLHRSGSNFFVLGATGNVYIVSLS 60

Query: 61  STPACNCPDHITPCKHILFVYIRVLGVLLDDECLRRRTLLPCQLNHLLAAPVLLESLAEI 120
           STP+C CPD ITPCKHILF+Y++ LG+ LDD CLRRRTL PCQLN LLAAP++L+SLAEI
Sbjct: 61  STPSCTCPDRITPCKHILFIYLQALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLKSLAEI 120

Query: 121 GLRRIFHQQFFHVKERA-------SVIVVDMEDGTTCPVCLDDMKKKDRVVACTTCRNIV 180
           GLR++FHQQFF V +RA       SV V DMEDG+ CPVCLDDMKKKDRVVAC+TCRN+V
Sbjct: 121 GLRKVFHQQFFQVNDRAASSSSSSSVTVEDMEDGSACPVCLDDMKKKDRVVACSTCRNLV 180

Query: 181 HEECFARWKRSKGRRTVSCVVCRARWEDTATDQQKYLNLSAYV 217
           HE+CF RWKRSKGRR VSCVVCRARW+DT  +QQKYLNLSAY+
Sbjct: 181 HEDCFTRWKRSKGRRNVSCVVCRARWKDTKDEQQKYLNLSAYI 222

[Close]

BLAST of Sed0020456 vs. ExPASy TrEMBL
Match: A0A6J1BPZ4 (uncharacterized protein LOC111004703 OS=Momordica charantia OX=3673 GN=LOC111004703 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 4.6e-91
Identity = 169/222 (76.13%), Postives = 189/222 (85.14%), Query Frame = 0


Query: 1   MESGAYTSSRPYCPR----RYKPSQAVADRIVRALHHDLRLLHCSDSTFYVLGATGNVYI 60
           MES A TSS P  PR    R+KPSQAVADRIVRALHH LRLLH SDS F+VLGATGNVYI
Sbjct: 27  MESVASTSSPPRRPRLHLTRFKPSQAVADRIVRALHHHLRLLHRSDSNFFVLGATGNVYI 86

Query: 61  VSLSSTPACNCPDHITPCKHILFVYIRVLGVLLDDECLRRRTLLPCQLNHLLAAPVLLES 120
           VSLS+TP+C+CPD ITPCKHILF+YIR LGV LDD CLRRRTL PC LN LL AP++LES
Sbjct: 87  VSLSTTPSCSCPDRITPCKHILFIYIRALGVSLDDACLRRRTLRPCHLNRLLTAPIMLES 146

Query: 121 LAEIGLRRIFHQQFFHVKERASVIVVDMEDGTTCPVCLDDMKK--KDRVVACTTCRNIVH 180
           +A IG+RR+FHQ+FF VK RAS  VVD+EDGTTCPVCLD+MKK   DRVVAC TCRN+VH
Sbjct: 147 VAAIGVRRVFHQRFFQVKGRASASVVDVEDGTTCPVCLDEMKKDDSDRVVACMTCRNVVH 206

Query: 181 EECFARWKRSKGRRTVSCVVCRARWEDTATDQQKYLNLSAYV 217
           E+CF RWKRSKGRR+VSCVVCRARW DT + Q+KYLNLSAY+
Sbjct: 207 EDCFLRWKRSKGRRSVSCVVCRARWRDT-SGQEKYLNLSAYI 247

[Close]

BLAST of Sed0020456 vs. ExPASy TrEMBL
Match: A0A5A7VCN6 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003720 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.5e-89
Identity = 167/222 (75.23%), Postives = 186/222 (83.78%), Query Frame = 0


Query: 1   MESGAYTSSRPYCPRRYKPSQAVADRIVRALHHDLRLLHCSDSTFYVLGATGNVYIVSLS 60
           MES A TSS    P R+KPSQ VADRIVRALHH LRLLH S S F+VLGATGNVYIVSLS
Sbjct: 1   MESVASTSSPRPVP-RFKPSQPVADRIVRALHHHLRLLHRSGSNFFVLGATGNVYIVSLS 60

Query: 61  STPACNCPDHITPCKHILFVYIRVLGVLLDDECLRRRTLLPCQLNHLLAAPVLLESLAEI 120
           STP+C CPD ITPCKHILF+Y++ LG+ LDD CLRRRTL PCQLN LLAAP++L+SLAEI
Sbjct: 61  STPSCTCPDRITPCKHILFIYLQALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLKSLAEI 120

Query: 121 GLRRIFHQQFFHVKERA------SVIVVDMEDGTTCPVCLDDMKKKDRVVACTTCRNIVH 180
           GLR++FHQQFF V +RA       V V DMEDGT CPVCLDDMKK DRVVAC+TCRN+VH
Sbjct: 121 GLRKVFHQQFFQVNDRACSSSSSCVTVEDMEDGTACPVCLDDMKKNDRVVACSTCRNLVH 180

Query: 181 EECFARWKRSKGRRTVSCVVCRARWEDTATDQQKYLNLSAYV 217
           E+CF RWKRSKGRR VSCVVCRARW+DT  D+QKYLNLSAY+
Sbjct: 181 EDCFTRWKRSKGRRNVSCVVCRARWKDT-KDEQKYLNLSAYI 220

[Close]

BLAST of Sed0020456 vs. ExPASy TrEMBL
Match: A0A1S4DW96 (uncharacterized protein LOC103488177 OS=Cucumis melo OX=3656 GN=LOC103488177 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.5e-89
Identity = 167/222 (75.23%), Postives = 186/222 (83.78%), Query Frame = 0


Query: 1   MESGAYTSSRPYCPRRYKPSQAVADRIVRALHHDLRLLHCSDSTFYVLGATGNVYIVSLS 60
           MES A TSS    P R+KPSQ VADRIVRALHH LRLLH S S F+VLGATGNVYIVSLS
Sbjct: 1   MESVASTSSPRPVP-RFKPSQPVADRIVRALHHHLRLLHRSGSNFFVLGATGNVYIVSLS 60

Query: 61  STPACNCPDHITPCKHILFVYIRVLGVLLDDECLRRRTLLPCQLNHLLAAPVLLESLAEI 120
           STP+C CPD ITPCKHILF+Y++ LG+ LDD CLRRRTL PCQLN LLAAP++L+SLAEI
Sbjct: 61  STPSCTCPDRITPCKHILFIYLQALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLKSLAEI 120

Query: 121 GLRRIFHQQFFHVKERA------SVIVVDMEDGTTCPVCLDDMKKKDRVVACTTCRNIVH 180
           GLR++FHQQFF V +RA       V V DMEDGT CPVCLDDMKK DRVVAC+TCRN+VH
Sbjct: 121 GLRKVFHQQFFQVNDRACSSSSSCVTVEDMEDGTACPVCLDDMKKNDRVVACSTCRNLVH 180

Query: 181 EECFARWKRSKGRRTVSCVVCRARWEDTATDQQKYLNLSAYV 217
           E+CF RWKRSKGRR VSCVVCRARW+DT  D+QKYLNLSAY+
Sbjct: 181 EDCFTRWKRSKGRRNVSCVVCRARWKDT-KDEQKYLNLSAYI 220

[Close]

BLAST of Sed0020456 vs. ExPASy TrEMBL
Match: A0A6J1GJ16 (mitogen-activated protein kinase kinase kinase 1 OS=Cucurbita moschata OX=3662 GN=LOC111454315 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 1.1e-87
Identity = 164/220 (74.55%), Postives = 185/220 (84.09%), Query Frame = 0


Query: 1   MESGAYTSSRPYCPRR----YKPSQAVADRIVRALHHDLRLLHCSDSTFYVLGATGNVYI 60
           MES A TSS P  PR     ++PSQA+  RIVRALHH LRLLH SDS+F+VLGATGNVYI
Sbjct: 13  MESVASTSSAPDRPRPRLPWFEPSQAMTARIVRALHHHLRLLHRSDSSFFVLGATGNVYI 72

Query: 61  VSLSSTPACNCPDHITPCKHILFVYIRVLGVLLDDECLRRRTLLPCQLNHLLAAPVLLES 120
           VSLSSTP+C CPD ITPCKH+LFVYIR LGV LDD CL RRTL PCQLN LL APV+ ES
Sbjct: 73  VSLSSTPSCTCPDRITPCKHMLFVYIRALGVSLDDACLWRRTLRPCQLNRLLTAPVMAES 132

Query: 121 LAEIGLRRIFHQQFFHVKERASVIVVDMEDGTTCPVCLDDMKKKDRVVACTTCRNIVHEE 180
           LAEI LRR+FHQQFF VKER  V +VD+EDG  CPVCLDD+ K DRVVACTTCRN+VH++
Sbjct: 133 LAEISLRRVFHQQFFQVKERTCVPIVDIEDGAACPVCLDDL-KDDRVVACTTCRNLVHDD 192

Query: 181 CFARWKRSKGRRTVSCVVCRARWEDTATDQQKYLNLSAYV 217
           CF+RWKRSKGRR +SCVVCRARW+DT T++QKYLNLSAY+
Sbjct: 193 CFSRWKRSKGRRNISCVVCRARWKDT-TNEQKYLNLSAYL 230

[Close]

BLAST of Sed0020456 vs. TAIR 10
Match: AT5G11620.1 (SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related )

HSP 1 Score: 185.3 bits (469), Expect = 5.3e-47
Identity = 109/258 (42.25%), Postives = 143/258 (55.43%), Query Frame = 0


Query: 1   MESGAYTSSRPYC---PRRYKPSQAVADRIVRALHHDLRLLHCSDS-TFYVLGATGNVYI 60
           MES       PY     +R+  +Q VADRI+RAL H +RLLH  ++ TF+VLGAT NVY 
Sbjct: 1   MESVGSNQISPYVSNRDQRHFLAQPVADRILRALRHRIRLLHRPNAGTFHVLGATCNVYT 60

Query: 61  VSLSSTPACNCPDHITPCKHILFVYIRVLGVLLDDECLRRRTLLPCQLNHLLAAPVLLES 120
           V+L +TP C CPD   PCKHILFV IRVLG+ LDD+CLR+R L  C L HL +AP   + 
Sbjct: 61  VTLMATPTCTCPDRKKPCKHILFVLIRVLGIPLDDKCLRQRRLRTCLLFHLFSAPTRPDC 120

Query: 121 LAEIGLRRIFHQQF--------FHVKERASVIVVDM---EDGTTCPVCLDDM-------- 180
           LA   L++ F Q F        +     +S   ++    E+  TCP+CLDD+        
Sbjct: 121 LASFRLQQRFLQLFPATTSQPGYTTNSSSSTSKMENEVDEEPATCPICLDDIIAIENVDG 180

Query: 181 ------KKKDRVVACTTCRNIVHEECFARWKRSKGRRTVSCVVCRARWEDTATDQQK--- 217
                 +K+  VV C  C+N VH+EC   W++S+GRR   CVVCRARW    + +     
Sbjct: 181 GNGGGKEKETAVVKCRVCKNKVHDECMLAWRKSRGRRPAICVVCRARWPANRSSKNPNVG 240

[Close]

BLAST of Sed0020456 vs. TAIR 10
Match: AT2G46493.1 (RING/U-box superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 7.2e-04
Identity = 29/123 (23.58%), Postives = 51/123 (41.46%), Query Frame = 0


Query: 77  ILFVYIRVLGVLLDDECLRRRTLLPCQLNHLLAAPVLLESLAEIGLRRIFHQ---QFFHV 136
           +L + +  + V +   C+  R     + +  +AA  +++   E+  RR   Q   + F  
Sbjct: 62  VLVISLSAVTVFVFPTCIAIRLYDSERFDSAIAAATVMQQPREVMARRGLDQSTIETFKK 121

Query: 137 KERASVIVVDMEDGTTCPVCLDDMKKKDRVVACTTCRNIVHEECFARWKRSKGRRTVSCV 196
            E      +   +G  CP+CL +   K+ V     C +  H EC   W +  G    SC 
Sbjct: 122 MELGESRRLSGTNGIVCPICLSEYASKETVRFIPECDHCFHVECIDVWLKIHG----SCP 180

The following BLAST results are available for this feature:

BLAST of Sed0020456 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885291.1	1.1e-94	79.63	uncharacterized protein LOC120075728 [Benincasa hispida]	[more]
XP_004148392.1	1.1e-91	75.34	mitogen-activated protein kinase kinase kinase 1 [Cucumis sativus]	[more]
XP_022131540.1	9.6e-91	76.13	uncharacterized protein LOC111004703 [Momordica charantia]	[more]
XP_023546870.1	8.1e-90	77.83	uncharacterized protein LOC111805851 [Cucurbita pepo subsp. pepo]	[more]
XP_023521856.1	8.1e-90	77.83	uncharacterized protein LOC111785706 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0020456 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0020456 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS10	5.5e-92	75.34	SWIM-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G373540 P...	[more]
A0A6J1BPZ4	4.6e-91	76.13	uncharacterized protein LOC111004703 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A5A7VCN6	1.5e-89	75.23	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S4DW96	1.5e-89	75.23	uncharacterized protein LOC103488177 OS=Cucumis melo OX=3656 GN=LOC103488177 PE=...	[more]
A0A6J1GJ16	1.1e-87	74.55	mitogen-activated protein kinase kinase kinase 1 OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of Sed0020456 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11620.1	5.3e-47	42.25	SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase...	[more]
AT2G46493.1	7.2e-04	23.58	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 139..213 e-value: 3.6E-11 score: 44.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 149..196 e-value: 6.3E-9 score: 36.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 150..196 score: 10.055033
IPR039903	E3 ubiquitin-protein ligase Zswim2	PANTHER	PTHR21540	RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2	coord: 11..216
None	No IPR available	PANTHER	PTHR21540:SF4	SUBFAMILY NOT NAMED	coord: 11..216
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 142..201
IPR007527	Zinc finger, SWIM-type	PROSITE	PS50966	ZF_SWIM	coord: 55..85 score: 9.210716

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020456.1	Sed0020456.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding