Sed0020404 (gene) Chayote v1

Overview


Name	Sed0020404
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RNA-binding KH domain-containing protein PEPPER-like
Location	LG09: 5606727 .. 5621820 (+)
RNA-Seq Expression	Sed0020404
Synteny	Sed0020404

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAAATGGCTTGTACATAGAGAGAGAGAGTAAAATTAGAAGCATATAAAAAGTTGGCCTCTCCTCTGGTTCTTCTCTATGGTATCATCTTCATCATCTTCTTCTTCATCACTTCAACATTCACAACTCACTAACTGAACAATTCCTCCACCAGAATATGCAGCCAAGCAATTTCCCACTCTACCCTTCCATGCCCGCCAAGCCTCCCTTGCCCGGCTCCGTCTTCCTCTCCAAGCCCGCCCTCGCCGGCAACAAACGCCGCCGCGACGACGACCCCTCCGCCCCCAATTCCGACCCCGCCGCCGACGTGTCGGCCCCCAAGAGGCCGAAGCCCCACGACGTGCTCTTCAGAATCGTCGTGCCCTCGAGCCAGATCGGGAAGGTTATTGGGAAAGTCGGTTGTAGGATTCAGAAGGTTCGTGAGGAGACTAAAGCTACTATCAAGATTGCTGATGCTGTTGCGGTATGGTTTTTGTTTTTGTTTTTTGAATTTTGTGTGATTTGGGGTTAGGGTTTTCGTTATTATTATTGTTTTTTTTTAATATTCGTGACTGTTCAGGCAATGGCTAGCCCGCCTGACCTTTACGATATTTGGATGTCTAGGAAATCAGTAGTAAATTAATTTAGGTGAGCAGTGTGGATTAAACCAATCAATTCTTTGTTGCGGAGACTCTTTTGAGGACTAGGCCACTCCATAATAATTGGGTTTTCGTTATTTTGGGTATCAAGGAAGTGTTGAAATCAAACTTTGTGTTTTCATTATGTTTAATTTTAGCATTAATTCTTAGATAGGAATTTCTTAGTTCTGGACCTTTTGACCGCTAGGTCACTCTATGATGGTTGAGTATCGAGTTAGTGTTGAAATCAAACGTTATGTTTTCATTATGGTTAATTTTAGCAATAATTTTTAGATAGGTGGTCATTGTGTATTGAACCCATCATTTTTTAGTTACAAAAGTCCTTTTGACATCTAGGTCACTCTATGATGGTTGTGTATCGATTAAGTGTTGAAATCAAACTTTGTGTTTTCATTATGTATAATTTTGGCGATAATTCTTAGGTAGGTGGTCACGATTGAACCCATCAATTCTGAATTACCGAGGCCGTCTTGACGACTAGGCAACTATTTATGATGGTTGGGTTTTTGTTGTTTTGGGTATCAAGGAAGTGTTGAAATCAAATTTTGTGTTTTCATTTCATTATGTTATGTTTAATTTTAGCATTAATTCTTAGGTTGGGTGGATTGAACCATCACTTCTTAGTTCTTTAACCGTTTTGACCATTAGGCCAATCTATGATGGTTGGGTTTTCGTTATTTTGGGTATCGAGGAAGTGTTGAAATCGAACTTCATGTTTTCATTATGTTTAATTTTAGCGGTAGTAGTTTTTCTCAACTCTTGTGTTGGGTCGTATTTGTGATAATTGAGGTTTTTCTTGATGTTTCAGCGGTATGAAGAACGTGTTATCATTATAAGTTCTAAGGATAATGAGAATTTGGTTACTGATGCAGAGAAAGCACTTCAGCAAATTGCAGCGCTGATATTGAAGGTCATACATCGCTAATTGCTAAACTTTGATTTATTTTTTTGGGTAAATTATAAGTTTGGGTTTAAAGAAAGTTAGAGTTTAGTCCCTATGGTTTCAAAAACTAGAATTTAGTCCATATGGTTTCAAAAACTAGAACTTAGTCTCATGGTTTGATAAATCTAAATATTAGTTCTTGTCATTCGTAATCGCTGTGAATTATATACGTAAAAATTAGCTATTCATGTATAAATGATGTGATTTGTAAACTCACACTATCATCATTAACACATGAATGAGAAACGATAGAGTAGGTTTTTTAGATTTGACCAAACCAAAGGGATTAAATTCTAGTTTTTAAAACCATATAGAATAAATTCTAACTTTCTTCAAACCATTGAGACTAAATTCTACTTTTTGAAACCATATGGACTAACTCCAACTTTTTTCAAACCATAGGGACCAACCTTATAGTTTACCCTATTTTTTTTTATAGGCTGCTCGAAGTGGGGGTTTCTGCCTTTTGCATGTGTTGATCATATTTTCTGATCATAAATTTGTGTTAGCCAGGGGTTTAGTGATGGGAATTGTTTTAGTTATAAAGTGAAATCCTTCTAATATGGTGCATTTTGGATTATGAATCTGTTATCTTTGATCTATATTGATGTTTTCCTTCTATGATTTAAAATCTCCATAATAGTCCAGACCTAAACATTTGGATGTCAAGACTGAACCCCATGGATATAAGATAGAGAATGTGAGTTTAGAAATCTTGGGTTGACTTCCCTAAATATTGATCTGTTAGTTTGTTTTTGTGGGTCATAGACTTGTATGATAGATATAATATATCACTAGTTTACTGTGTAATAGAAGCTGAAAAGTTGGTTGTAATATATGTTTTCAAATTCTGGTAGTATGATTGAAAGGTTAATGTTCTGGTTTTGCTAGCAAGGCACAAAACTAATTGCAGGTTGAATATGTAGGGGATCTTAATTGATTAAATGGACTTAAATGATCACTCATGTGACATTTTTATGCAGTATATTGTATGGCCTTCCTAATGGGTTAAATTTTTTTTTTTTTTAAGGGAAATTGTATTGGATGAGCTCTTCTCACAAAATAATTACGAATGTAGACAAATTCTAAAGTATTTGCATCCATAGTCATTAATATGTTTTAATATTGTATTATAAATACTCATAAATACAACTTTATGTATTATAAATACTCATTAATACCGTATTACTCATAAATACTCTTAACTATGGATGTTAATTTTTTTTAAAAAATGACCATATTTGTAATTATTTTCTAGATTTGATTAGTCTCGTAAGTTTCCTTGAGTGTCATTTGATTTTAGGAATTTGTAGTATATTTCATAACTCTTAACTTAGGCAGCCATCACCATTTTAACCTACAAGTTTGGATTTCCTTTTATTTATTTATTTTACTTTTAAAAATTATATACTTGTTATATTATTACAGGACGATGGTACCAGCACTGAGGAGCTAAAAGTTGGAGCAGGGCATGTGGCTGCCAATACCATAAGGCTCCTCATAGCAGGATCTCAAGCAGGTTTTTTGATTGGTGCCTCGGGTCAAAATATTGAACAATTGAGGAATTATTCGGGTGCGACAATTACGATCCTTGCCCCAAATCAATTACCTCTTTGTGCATCTGCCCATGAATCTGATCGAGTGGTGCAGGTGAGTTTCTCCGCATTGTTTTTTATTTAGGAAACATAATCTTTTCAATGATGAGTGAAAGCAAAAATCTCTATGGCAACTTCACAAAAAACTATGCCATTGTGACATAGTGGGAGATGATGACACCAAAATGAAGTAGTATAAGTCATAGATTCAAGAGACCCTTGTTGAGAATTGTTGAAGATTCGGTTCTCTCTCCAACCACCACTTCCAAAAGAAGGCTAGCAAATTTTCTGCCATTTATATTCTTTAAGATTTAAGATACAATTTTCGTTAATAATTTTTATTTTACGTACTAAGAACTATGTTTTCAATTGATTATACTAAGAATTTCTTAGTATCAAGTTGTTTATTCATTCTTATATGTGCACATAGTTATTTACTGAATAGATCATCTATAGAAGATAGAACTTCATGCAAATGTGCACATAGATATTTATCGAATAGATCATCACCGGCAGTCTCTTTTCTCTCTCCCGAGCTTGCACTATTTGAACTCTGGTTGTCTTCTTTCTCTCTTCTGAGGTTGTACCATTTGAGCTCTAGTGAGGGAATTGCTCGAGAAGAGACAACACACCTTTTCTCTCTTGTCGTAGGGGTTTTTTTTCTCCTCCCGGGTGTGTGTGGTTCCTATGTGCTTGATCTCTATTGTTGGAGAATATTCGAGATCTACTCTTCTTCCTTCGACATCGACAAAGTCTTTCTTCCTCGAGAAGCTTAGGCGACTAGCCTTCTTCATTGGGATCTCTCGATCTACTCTATCTTTGGCTTCATCATTTATATCCTCCTTGATAATAGGGGTGACAAGATGTGAAGTTGTGGTATGGCCAACGATCAAGTCTTGCCTTTCATTGTCGGGATCTACTCTACAGTCTTGTGTTGTATTCACTTCTCCATGGACTTCGACCCTTTCTCCTTCTTTTGGCCTTATCCAACATAATCAGATACCTATCACACAAGCATCTTCTTTCCAATCTACAAACAAAACACAAAGACACATTGGCTATGTTGAATCGACATATAAGCTCAACCAATCCCATCTTCTTGTTTTATTGTATCACACACTATCAGGGATGTACTTACCGATTTACTAAATAGATTTCTATGTAACACTTTCACTTTATCAAAGAAAATGTTTCAATTTCCTATAAAAAGTAAAACTAAAGAAAAAATAAATTGACATGCTCTTTCTCTCACACTGGGCGGGGTTACTTTTCTTGATGTCCCGAATCCCGATCTCTCATCCCATCCCATCTACTCTCATTTTGAAGATATCCAGGGACCATGCTATTAAGAGTTGGCATTAACGATTGATTATGTTTTGTCTGGAACACAGATATCAGGGGATGTTCCTGCAGTTTTGAAGGCGCTTGAGGAGATAGGCAATCAGCTAAGGTCTTACATTTATAATGTTTCAGAGTTTACCTGATTCATGCGCGCTTTTGAAAGTTCTACATAACCTACACTCAATTTCTGGAGTTGCAAGACAGTAGCATATGTTTCTTCAGATCAGTCAAATCATGGTTTTATATTGTTCTTTCTATTTTTGTAGTGATTTTGGCTTGAATTTTCAGGGTAAGTCCATCTCGGCAAGTCATTTCTGTCAGCCCAACATATAATTATAATGCAATACACCCACCACAATCATATATGGATCCTACCTCAGGTTATTCAGTTGTTTTCTGCATCAAATAAAAATCTTTCTGATTCTGTCGTTTGTGTGTCTGTGAAGGTTTAATATTTTTTCTTCTAACGACATCATCTTTAGGAAAACCAATCTTGCAGTTAATTATGTAAACTTTGAAATGTTGATATCGGAGACGTTGGTGGGTGGGTTGATTGGGATTGGTGGCTTCAACATATCAAGAATCAGAAATGAATCTGGAGCCACAATCAAGGTTACCTAACAATTCGTTTTTATTTCACTATGAAAGGTCCTGAAATTCCGTTTCTAAATCTTTATCCTTACATTGTTCTTTACAGGTTTGTGGTGGAAGAGGTGAACAAAATTACAGGCAAATTCAATTTGGTGGAAGTGCTGAACAGGCATGACCTTTTCTCTTATTTTAAGGTTTCATGAACGAGCATAATTCGTTGATGGGGAGGGTGATCTGTATTATTAGAGCTGTCAGATTCTGAGGCTGGTTATATTATTTTTACCATTAGCTTTATATAATGAAAAGCTGGGTATATCATTTTTTTTTATAGGAAACGATAAGCTTTCATTGATTCATGTTGGTTGATATAATTAAATTTCTCCCAATCCATCAGCTTAGGTTTTTGGATTGATTGGTGGTTTAACTTAATTTAACATGGTATCAGAGCAGGAGATCATGAGTTCGAATCTCTACGAAGTCGTTTCCTCCCCAATTAAAATTAAATTCCACTTGTAGGGCATTTCTCAAATTTCAAAGCCCACAAGTGAGGGGGAGTGTTGGTTGATATAATTAAATTTACCCCAATCCATCAGTTTAAGTTTTTGGATTGATCGGTGGTTTAACTTAATTCAACAATTTATGAATAAGTACAAAAAGTGTGGCTAATATAGCATCCATATAGTTACAGAAAATGTTGCCAATGGGATAATAGGAAGGAAAGATTATAATACAAAAAGGAGAGTGTTTATGACTCCAAAAAAGTTCAGTGTGCAAAGTAGCATCGGTGAGGGAAGCAATGTTATCTTGAGTATCTTTAAAGATCCTGTTGTTTCTCTCCCCCCTCAATTTCCAAAAGACAGCATAAACAAAATTCAGCCATAATGTCTCTTTATAGCTCTTGAAAGGGCACCCAACCAAAAAATAGAGAATGAGAGTTGATATGTCTCTAGGACGCACAAAGGTCCATCCAAACGAATCCAGGATTAGGTTCCAAAACCATTCCGCCCAACTACAATGGATGAAGATATGGTCTTGAGACTCTTCACCATTATACCAGATAGATGATACAACAACTAGGAGACATAGTAAGACCCTGGAGTTTCTTTTGCAGCCTATCATGAGTATTGATTGTTTTATGACTTAGTTCCCAAACAAGAAATTTTGCTTTTTTAGGCTGAAATCCGGGTTTATCATTTTTTATATGATGTACGAATGAATGTAGGTTTGTATACATATATTAGCTTATATATGTAGATACTCGATACTCCTTATTCTTTAAGAGGTGCTTCCTTGTCTAGGGACGAACCAGTGGTGCCCTAAGTCTTAGGGAGCGAAGCTCTGACTCCCGGTCATTAAAAAGAAAAAGTAAGCTTGTCTAGGTCATCACTCTTCCATTTCATTAGATTTCCAGTGCTCATCATTTGATAAGAAGATGCTAGTTGTTGTAGCTCTTATCAATCTTGTGGGGAATGTTCGTTGTGCGGAAGGGCGTAGTGGTGTTAGGTGCTGGATTCCTAACCTAGCAGAGAGTTTCTCTTGTTCTTTTTGTCTGTGTTTAGTTTTTTCTTCCTTTTTGTTGGAAGCTTTAGTCTTTTCCTCTTTTTGAAAAGTGAAAACTTCAAAGAAGATTAAGTTTCTTAGGCCCCATTTGATAACCATTTTGTTTTTCGTTTTTTATTTATGAAATTTAAGCCTACAACAATTACCTTACTATACATTTTTCCTTATTTGGATATCAACATTTTACCTATATTTTAATAAACAAAACCAAAATTTGTAAACAAAAAAAGTAGCTTCCAAAAACTTGCTTATGTTTTTGAAATTTGGTTAGTATTCTCCTACTTTCTCAAGGAAAGTTGGATACATTGTAGGAAAGATGGAGCACATGGTAGGAAATTTGAATAGAAATGGGCTTAAATTTCATAAACAAAAAACAAAATGGTTATCAAACGGGCCCTTAATTGTGCAATTATGCACCTGACATATTGTATTTTATGTTGGAGGGCATCAAAGGATTTAGACCATCCTTTTTTAGTGTGCAAGTTGGCTTCGTAGTTTTGGAGTTGATTTTTTATGGCTTTTGGTCTCGTGCTGCCGCGTTAGAGTATATAGTTATAATCAGAGAGTGATTTGATTATTCATCTTTTAATGAAATTGTGTATTTTTGTGGAAAGCTGAGATGTGTGCTGTCTTGTGATTTTTAATATTTTTAGAGAGAAAGGTCCACGAGTGGTGGCACAAGTGGTTGAAGGCTTGGGCTTTGAAGGTGTGCTCCCTTCAAGGTTCTAGGTTTGAGACTCACCTGTGACATTAATTTGTAGACACCTCTTGTGTCTCCATTCCTTTGATGTCTCCCAGTACCTAACCTAAGAACGGGCGTGGTTATCCCGGGTATAGTGGAACGAAGTTTTGATTTTCCGGTTTCAAAAAAAAATATGTTTGACATCACTCCTTCGATGTCTCCCGGTGTCTGGCCTAGGGGACGGGCGTGATTACCCTTGTTTCAAAAAAGAAAAAAAAAATTTGGAGAGAAAGAGAGATCCTCAGAATATGATTGAGCTCTCATTAAATTCTTCATTTTTTTTATGGCCCTTTTGAATAGAATTTTATGAGCTAAAAGGAGTAGTGCTCTAATGGCATTATGTACGACCATTTTTTAAAAAAAGGCAACAAACTTTTCATTAAAATGGTGAAAAGAGGCAAGAGCGAAATCCACATAGGATAAAAATAATAATTCAAAAACAAAAGAGCCTAAACAAAGAAGCTAAAAGACAGCAAAACAGGAAAAGTGCAAGCAAGGTAAGAAAGGGGACCACGAAAGGCGTCCCAATTAATCACAATATCTTGAATGAGATTGGAATCAAAAGCCTTTGAATGAGACAAGATGAAGCCTTGATTTTAGCTTGCTCAAATATGAAATTCCAGTAGAGGGGAGAATGTTAAAAAATACGCTGGTTTCTTTCCTACCAAGTGTCTTGAAGGATGGCCTTAACCACATTAATCCAAAGAAGCCGAGCACGATTATTCAACCTTGTCCCGATGAGGAGGCTACAAATGTTTGATCTAGTGTCATCCGAGTGAATCAAGCTCATCTTGAAAATCTTGAACAATTTGGACCAGCAAGCTCTCAAAAACTTACAAAGACACAGAAGATGGATAGACAATTCTGATTCCTCAAAGCATAAAGGACAAACCGATGGCAGCAAGGCTGACTTGGAAAGCTTTCTTTGGAATGAATCTAGGCAGACTTGTACGACCTAGTTACCAAAAGATTACAGGTTCGAAACTCCCACCCCAAATGTTGTTGAACTCAAAAGGAATAGAATTTTACGCAGTTGTGTGGGGAAGAGGTGATACCTTACCAATTGGTATAAAAGCGAATTGTGAATGGGAAGATTTTCTTTTAGTTGTTTTCTAGAATGAACAGTGTGGTCGTCTTCAGGAGGAAGAAGGCTTCTTGTGCATGCTTATTGGATCCGTATTTTCTGATGATTTTTAAAGGACGATGATGTTGTGGCTTTTGCAACCTTTGTTGGATTTATTTATTTATATTTATAACGAATCAAACTTTCCTTAAAAAAAAGAATGAAAGCACTGCAATGGACATCCAAAAAATAAAGCCCACAAAAGCACTGCATAAACGACCTTAATCAAGCAAAATAACTCCTAAAGGGTTATCACAAAAGAGATTCGAAATGAAGGTCCAAAAAGAAACATATTAAAAATCTCTCAACTCCTATGAAAAATTTATTATTTCTCACTCCATAACTCTCATAAATTCACACATAAGTTCATAACCTCACTTTCTAGTAAAAGCCACTTCCTCACTAAAAGAATATAAACAAGATTCTCCTTGATCATTCATCTACAATCTCAATGTCTTGAATCCCAATGTTTTGCCACCTCGATGCCTAACTCTTTGAAGAACTGGTTCTACACACCAGAAGCTACCTCACAGTTTCACAAAAGATGATCAATATCTTCTATCGCCTTCCTTCACTAGAGAAGGATTTGTCCTTGTCACATTGCCTAAAATATTAATCCTTCCATAAAGAATCTGCTAGGTAAATATCTTGATATCTTTTAAATTTTCACTTTCCATAAAGAGACAAAAACATGATATTCCGACAAAGAGGAAAAAGATTAGCCAGACAAGTAAAGAAAGAATGCATAAAAAGGGTTGGTCTGTGTGTTTTGTGTTATTCAGATGGAGATTTTCTTCAACCTGTGGGGTTTCTATAATTGTTTAAAGGAGTCGATTCTCAAGCTTTTATTAGGCCCTTTCTTGGTAGCCAAACCCAATATTATTTGGTTAAAACTCTATATAGACACTGTTGAATTCTAGTTGGAAAGAAAACGACTAGTTTTTTTCTTTGGTCTGAACGTTTCGACTCTGCACGATCGAAAGCTTTATCTTTATGTTATCTTACAGTATTTTACAGATTTCTCTTCCATGATGTTGCTTTGAATTGACATGCTTTTATTTGTACTTTGTAATGTTTTTGTCTCTTTTGTTTCTCACCTCTATATAGGAGGTTTGTGTCTTTTTTAATTTTCTCTCGTCTCATTTCAGAAAAGTTTCCTATTAAAAATATTTCTTTCATTTTCTGGGGAAGGATTTTCATTTTGAATTGTTTACAGGTAGCATTGGCAAAGCAGAGGGTTGATGAATATATTTATTCTCAGTTGGTGCGACAAGCTGGTGCTCAACCGACAGCGTAGGTTTTCCTTGTTACTGTTCATTATATCTTTCTCTCACTTCGTGTGAAAAAACTTTCCTCCGGTGAAGCCATAATCTAATTCTAGGATCTTATCCCAAAAAAGGAAAACTAAAATTCAATTAAGAAATTTCATTGAAATCAAAGTTTATGGCGGCTCGAGTCTGTGTCTAGCTCTTTCTAAAGCCCCCCTACATATCTGGGGGGTTCGCGTCTTAAGAAACCAAAAGGTTATGAATTAAATTTATGGATTGGTAGTGGTTAAGATTGTCTTAAGAAACCAAAAGGGTTGGTAGTGGTTAAGAATGTCTTAAGAAACCAAAAAGGTTATAGATTAAATTTATGTCTGTGTCTAGCTCTTTCTAAAGCCCCCCTACATATCTGGGGGGTTCGCGTCTTAAGAAACCAAAAGGTTATGAATTAAATTTATGGATTGGTAGTGGTTAAGATTGTCTTAAGAAACCAAAAGGGTTGGTAGTGGTTAAGAATGTCTTAAGAAACCAAAAAGGTTATAGATTAAATTTATGGTTGCAATCTACCTAGGAATTAATTTCCTATGGATTTTCTTGACAGTCAAATATTGTACGATCAAGCATTTTGTCCCAAGGTGCGTATAAGCGGCCTGTGCACTCATAAATGTAATCTATGACCTTGACAGCCAAATGTTGTAGGATCATACATTTTATTCTTTAACATTGAGAAACTATCATGGTGATACGATCCGGACCTTGGAGTTTTAGGAATATTAGTATTAGTATTTATTATTTATTAGTTAATTGTTATTTTAATTGTATTGGGCTTGGGCCTATTATTAGTCTTTTATTTAATTAGGGTTTAGGGTTATAAATAGGGGAGGATAGGTCTTTGTTAATCATCTATTGAATTGTCGTCATTGTACTTTGGCTCTTTGAGAGATCCTCTCAAGAGATTATCGTAGTTTAATAATATATCGTGGTAGATTCTATCATTTTGGTATCAGAGCCATTTACCGATCCGGGAATGGTGAGTACTAAGATGGAAACAAGGATGCAAGAGTGTGAAGAAGGGTCGGCGGAATTAGCAAGGAGGCTGACGGATGTAGAAGCAAGGATGGAATCGATTGAAGAACGTTTGGGGAAAAAGATGGATTTGAAATTCGAACAGCAGGATGCGAAGTTCGAGATGATCAACCGGAGCTTGCAGCTGTTAATAGAATCGAAGCAAGGAGACAAAGGGAAGGGGCTGGCGATTGAGGCTGCGCGGCGAGGAGAGGTGTGCGTGCCCACGGTGGCGCGCGCATGCACGAGGCGGCGCGCAAGCGAGCAAGGGGAGCATGGGTCGGGCGCGGGAGGAGGGACGTCTGGAGAGGAGGTGGGTGCGATGGGGGGTTACAGCGGGGCTGGCGACCAGCGTGGGCGACCCGAGCAGGGCGGGCGGCTGGGTCTGTCCGAGAGGAGCGGCCGGCGGGATCGGTACGGGCGGCGCAGGAGAAGGGGTTTGTGCAGGGGGTGGCGCGTCGGGCGGAGGCGCCGGACGTGGGGGCTGGGGCCCTAGTGCGGGGAGCGTCGGGCCAGGCGAGATGGCTCGTCGTGAGGGCGGGGCGTCTGGCGAGTCGTGTTGGCGCGGAGGCGAGGCGGCCGAGCGGGCTGGTGGGGTTCGTGGGGCGAGCGCGAGCGGGTCGAGGCCGTGGGGGGGGCGGGATCGGGAGGGCGTGTGTGGCACGGCGCGCGCGTGGGGACCGGCTCGGGTTGGGGCTCGGGCGTGGCGCGCCGCCGGCTTCGGGCCGGGCGCGCGCGTGTGGGGTGTCTTGGTCGGGCCGAGCGAGGCCGGGGTGGTGCTTGGGTCAAGCGCGGGGTCGGGCGGTGTGTGGCACGGCAGTGGCCCAGGGGGACCGGGTCGGGGCGGGCTGGTCGGGCGGGTCGGTGCAGGCGGCCGGGTGGGGCCGGAGAGAGCCGCCGTTCGATTTGTGGGGACGGGATTCGACGAGAAGGGGAGAACCAGAAGGTCGATGGGCGAGGCAACAAGTTTACGGAGGAGAGGAGGTTGCGCGCTCGGTTATGATAGGCCGATAGCGCGTGGCCAGTTGGAACGATCGGGGATGGGATAATCAATTTCGAGAAGGAGACCGAGAGGATTGGAGGGGTGGGAGGATCGTGGTGAACGAGGAGGACCGAGAAGCGGGAGGTAGAGAAGGGTCGGTGTTAGACGGAGATTACTAAACTCGAGATGCCTGTATTCAAAGGGCTTCTGGAGTGAGGATTCGGACGGATGGTTGTGTCGAGTAGAACGATACTTTTGGGTAAACCTACCGGAAGGACAGAACGGCGGTCGATGTTGCGGCTCTGTGTATGGAGGGTGAGGCTTTGGAATGGTTGCGATGATGAGGAAGATCGATCCCCGATCGGTTCTTGGGAAGAATTCCGAGAACTCTTTGTTGCACCGCTTCCAACCAACGATTAATGACAACAAGTACGCCAATTTGATGAGCTTACAACAAAGTTGGAAACAGTTAAAGAGTATCGACGATTTTGTTTGAGAAGTATGCAAAGGGAATGCGTGATATTAGTGCAAGTGCATTGGAAGGGAAATGGGAAAGCGGGTTGAAGCGCGAAATTAGAAGTGAAATGAGGAAATCTGCGACTGTTGGGATTCAAGATAAGAAGTTTATGGCACAGGTGATTGAGGATGATTTTGCTTTTCAGCTTCCCAAAATGAGGAAGTTCTTCCAGCAGTCCAAGGCTAAAGCGAGAACGATTGCATCGAGAACTGGAAGCACAGACCCTTTCTCACGGGACTACAACCATTCACCCGCGCCTTGTAAAAATTCATCAAGTCGAAATTCGAGCAAGGAAGGACAAAGGGTTATGCTTCAGTTGTGATGAACGATTTGTCCCGGACATCGTTGTCGAAGAAAGAGCTCGAAATTTGGATGTGTGGGTTGTTCGAGATGCGCATGATTACCGGGATGTTGATGTGACAGACTTTTCGCGTAAGACGGAGTCGCTGAAAGATGGCATCGGAGATGGAACACCTTGAGGACAAGGTGGCTCTTGGGGGGGAAAGTATTGATACGATCCGGACCTTGGAGTTTTAGGAATATTAGTATTAGTATTTATTATTTATTAGTTAATTGCTATTTTAATTGTATTGGGCTTGGGCCTATTATTAGTCTTTTATTTAATTAGGGTTTAGGGTTATAAATAGGGGAGGATAGGTCTTTGTTAATCATCTATTGAATTGTCGTCATTGTACTTTGGCTCTTTGAGAGATCCTCTCAAGAGATTATCGTAGTTTAATAATATATCGTGGTAGATTCTATCACATGGGTTGGTAGTGGTTAAGGTCTTAAGGAATCAAAAGGTTATGGATTAAATTTATGGTTGCAATCTATTTAAGAATTAATTTCCTATGGATTTTCTTTACAGCCAAATGTTATAGGGTCAGACATTCTCTTCCGAAGTGCGTATAAGGCAGCCTATGCACTCACGGATAATAAAAAAAACACAAAGAGATGAGTTGTACTTAAATTCTAGTAGTATTTGAAAGGAAACGGTGAACTGAATGGAAAGACTTTGTCAAGGAAACAACATTTCTTATTTAGCTTCAATCAAGGACATGGAAGGTGGAGAGTTTGTCATGTTCTTTTTCTTAGGTGAAAATTGCTTTTTTATTCATTTAGATTCATAATCTTCAAGAAAATGAAATGTGAACCAATTTTTTTTTCTTTCTAAATTTTCTAATACAAATGTCTTTGAAAACTCCAACACCAGGAAGAAAACAGTAGTTAACTTCATTAGTACTTTTCTGAGTGAAAATTCATAAAGTACACTTTGTAGAACAATCTCTAATTTTCGGTATGAACTAGAGCAAAATGCTCTCTCGTCGTAGTTCGACTTTATATCGCAAGTAGATGATACTCTAGTTTGGAGTATAAACTATCAACACGAACACGAAAATTCTTGTTTCTTGCAATTTATTTATGGCTATTCATGTATCATGTTTTCCTTGTACCCTTTCAATACGTGTTGCACAAATGGAATTAGAATTTGGTTCATATGGTTTTAAATGTTTCGAAATAAAACCTATGATTTGGTTCAATCTTTGTAGGCATCCTTTGTCGGATGTTTTTCTTATGTGCCTTTATTACTTTGAACATTAGTTCATTTGCCTCTACTAGTCAGGGTGATGCCAATGATATTTTGGTCAGCAAAATTTTGTAAGGATTGAATTGAAACTTTTTAAATCCTGTGAACTAATATGAAAGGAAGGAAATAGGGTGAGAATTTAGTTCTTATAATTTGAAAAAATTCGAGTTCAATTTCTTTGGTTTTAAAAAATTTAAAATTCAGTTCATGTACTTTGAAACATTAGATGTTCAATTCTTATGATTTTAGAAACCCTAACAAAGAGATTTTACACAGCTTGATAGGATTGAATTTGAGATGGAACTTACACAATTAGCTCCTTTTTTTATTAACATACAACCAATATCTTATTGACATTTCATTGACAAATAAAGGACTAGACTTGCAATTCTTTCTGTCTCTATTAATAGAAATGTCTCTTTATTATGTTTTATCAAATGGTACTGTAGGGGTTGAACTCTAGTTTTTTTTTTTTTTTGATATCTGTGAGTGTTCGGGCTAGCTTGTGTGTACCTCGACTAATGTCATGGGACATACCGCCTGAATTCTAGTTTTTCATATTATAGAGATCAAGTTCTATTTTTTTTTTTTCGGTTGACCAAAATGGAAATACTACAGCTGCTAAGATGATATATTAGTCAAAATGTTATTAGGCTCTATTGCTGCTGCTGACAAACAAACAATAAACTCATTTGGTACAATGTTGTTTCAGTGTGCAGATGTGGTAAATCTCAAACATTGAGAATTGTTGCTTTTTATGGGAAGCTCTGAAGAACAGCACCTCCTACAAACACATCTGATGATTGGATGAATGTGAGGTGGCTCTGTGAAGTGCAACATGATTTTGAAATAATGGCTTCCTTTTCTTTTTTTTTTCTTTTTTTTTTAAATTTAACTGTGACATATTGTAATTGTGGCTAATAGATTGAATATTTTATGTATTGACAACTTAAGGGTTTCAATAGCTATAAAAGGTTGCTAGGAAAAGTTTGGCTTTCAGCTCTGAGTCCTGGAATAGAACTGTAATATCTTTCTTTATGACTCATCTTATTTCTTCAAAGTGCTTTTACCTCAAAAGGGTTTTATATTAGCATTTTTAGGAGAAGCCAGTGAAATGAAATGTTTACTTTGATTATAGTATCA

mRNA sequence

AAAGAAATGGCTTGTACATAGAGAGAGAGAGTAAAATTAGAAGCATATAAAAAGTTGGCCTCTCCTCTGGTTCTTCTCTATGGTATCATCTTCATCATCTTCTTCTTCATCACTTCAACATTCACAACTCACTAACTGAACAATTCCTCCACCAGAATATGCAGCCAAGCAATTTCCCACTCTACCCTTCCATGCCCGCCAAGCCTCCCTTGCCCGGCTCCGTCTTCCTCTCCAAGCCCGCCCTCGCCGGCAACAAACGCCGCCGCGACGACGACCCCTCCGCCCCCAATTCCGACCCCGCCGCCGACGTGTCGGCCCCCAAGAGGCCGAAGCCCCACGACGTGCTCTTCAGAATCGTCGTGCCCTCGAGCCAGATCGGGAAGGTTATTGGGAAAGTCGGTTGTAGGATTCAGAAGGTTCGTGAGGAGACTAAAGCTACTATCAAGATTGCTGATGCTGTTGCGCGGTATGAAGAACGTGTTATCATTATAAGTTCTAAGGATAATGAGAATTTGGTTACTGATGCAGAGAAAGCACTTCAGCAAATTGCAGCGCTGATATTGAAGGACGATGGTACCAGCACTGAGGAGCTAAAAGTTGGAGCAGGGCATGTGGCTGCCAATACCATAAGGCTCCTCATAGCAGGATCTCAAGCAGGTTTTTTGATTGGTGCCTCGGGTCAAAATATTGAACAATTGAGGAATTATTCGGGTGCGACAATTACGATCCTTGCCCCAAATCAATTACCTCTTTGTGCATCTGCCCATGAATCTGATCGAGTGGTGCAGATATCAGGGGATGTTCCTGCAGTTTTGAAGGCGCTTGAGGAGATAGGCAATCAGCTAAGGGTAAGTCCATCTCGGCAAGTCATTTCTGTCAGCCCAACATATAATTATAATGCAATACACCCACCACAATCATATATGGATCCTACCTCAGTTAATTATGTAAACTTTGAAATGTTGATATCGGAGACGTTGGTGGGTGGGTTGATTGGGATTGGTGGCTTCAACATATCAAGAATCAGAAATGAATCTGGAGCCACAATCAAGGTTTGTGGTGGAAGAGGTGAACAAAATTACAGGCAAATTCAATTTGGTGGAAGTGCTGAACAGGTAGCATTGGCAAAGCAGAGGGTTGATGAATATATTTATTCTCAGTTGGTGCGACAAGCTGGTGCTCAACCGACAGCTGTGCAGATGTGGTAAATCTCAAACATTGAGAATTGTTGCTTTTTATGGGAAGCTCTGAAGAACAGCACCTCCTACAAACACATCTGATGATTGGATGAATGTGAGGTGGCTCTGTGAAGTGCAACATGATTTTGAAATAATGGCTTCCTTTTCTTTTTTTTTTCTTTTTTTTTTAAATTTAACTGTGACATATTGTAATTGTGGCTAATAGATTGAATATTTTATGTATTGACAACTTAAGGGTTTCAATAGCTATAAAAGGTTGCTAGGAAAAGTTTGGCTTTCAGCTCTGAGTCCTGGAATAGAACTGTAATATCTTTCTTTATGACTCATCTTATTTCTTCAAAGTGCTTTTACCTCAAAAGGGTTTTATATTAGCATTTTTAGGAGAAGCCAGTGAAATGAAATGTTTACTTTGATTATAGTATCA

Coding sequence (CDS)

ATGCAGCCAAGCAATTTCCCACTCTACCCTTCCATGCCCGCCAAGCCTCCCTTGCCCGGCTCCGTCTTCCTCTCCAAGCCCGCCCTCGCCGGCAACAAACGCCGCCGCGACGACGACCCCTCCGCCCCCAATTCCGACCCCGCCGCCGACGTGTCGGCCCCCAAGAGGCCGAAGCCCCACGACGTGCTCTTCAGAATCGTCGTGCCCTCGAGCCAGATCGGGAAGGTTATTGGGAAAGTCGGTTGTAGGATTCAGAAGGTTCGTGAGGAGACTAAAGCTACTATCAAGATTGCTGATGCTGTTGCGCGGTATGAAGAACGTGTTATCATTATAAGTTCTAAGGATAATGAGAATTTGGTTACTGATGCAGAGAAAGCACTTCAGCAAATTGCAGCGCTGATATTGAAGGACGATGGTACCAGCACTGAGGAGCTAAAAGTTGGAGCAGGGCATGTGGCTGCCAATACCATAAGGCTCCTCATAGCAGGATCTCAAGCAGGTTTTTTGATTGGTGCCTCGGGTCAAAATATTGAACAATTGAGGAATTATTCGGGTGCGACAATTACGATCCTTGCCCCAAATCAATTACCTCTTTGTGCATCTGCCCATGAATCTGATCGAGTGGTGCAGATATCAGGGGATGTTCCTGCAGTTTTGAAGGCGCTTGAGGAGATAGGCAATCAGCTAAGGGTAAGTCCATCTCGGCAAGTCATTTCTGTCAGCCCAACATATAATTATAATGCAATACACCCACCACAATCATATATGGATCCTACCTCAGTTAATTATGTAAACTTTGAAATGTTGATATCGGAGACGTTGGTGGGTGGGTTGATTGGGATTGGTGGCTTCAACATATCAAGAATCAGAAATGAATCTGGAGCCACAATCAAGGTTTGTGGTGGAAGAGGTGAACAAAATTACAGGCAAATTCAATTTGGTGGAAGTGCTGAACAGGTAGCATTGGCAAAGCAGAGGGTTGATGAATATATTTATTCTCAGTTGGTGCGACAAGCTGGTGCTCAACCGACAGCTGTGCAGATGTGGTAA

Protein sequence

MQPSNFPLYPSMPAKPPLPGSVFLSKPALAGNKRRRDDDPSAPNSDPAADVSAPKRPKPHDVLFRIVVPSSQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDNENLVTDAEKALQQIAALILKDDGTSTEELKVGAGHVAANTIRLLIAGSQAGFLIGASGQNIEQLRNYSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVSPSRQVISVSPTYNYNAIHPPQSYMDPTSVNYVNFEMLISETLVGGLIGIGGFNISRIRNESGATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQLVRQAGAQPTAVQMW

Homology

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BLAST of Sed0020404 vs. NCBI nr
Match: XP_023514318.1 (poly(rC)-binding protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 570.1 bits (1468), Expect = 1.3e-158
Identity = 307/357 (85.99%), Postives = 322/357 (90.20%), Query Frame = 0


Query: 1   MQPSNFPLYPSMPAKP------PLPGSVFLSKPALA-GNKRRRDDDPSAPNSDPAADVSA 60
           MQ  + P+YPSMPAK       PLPG+V +SKP  A   KRRR+DDP  P S+ A DVSA
Sbjct: 1   MQSGDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSE-AVDVSA 60

Query: 61  PKR-PKPHDVLFRIVVPSSQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIIS 120
           PKR  K HDVLFRIV PS QIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIIS
Sbjct: 61  PKRQAKAHDVLFRIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIIS 120

Query: 121 SKDNENLVTDAEKALQQIAALILKDDGTSTEELKVGAGHVAANTIRLLIAGSQAGFLIGA 180
           SKD EN VTDAEKALQQIAALILK+DGTS EELKVG GHVAANT+RLLIAGSQAG LIGA
Sbjct: 121 SKDKENTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTVRLLIAGSQAGSLIGA 180

Query: 181 SGQNIEQLRNYSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVS 240
           SGQNIE+LRN SGA++TILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRV+
Sbjct: 181 SGQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVN 240

Query: 241 PSRQVISVSPTYNYNAIHPPQSYMDPTSVNYVNFEMLISETLVGGLIGIGGFNISRIRNE 300
           P RQVISVSPTYNYNAIHPPQSYMDPTSVNYV FEMLISETLVGGLIGIGGFNISRIRNE
Sbjct: 241 PPRQVISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNE 300

Query: 301 SGATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQLVRQAGAQPTAVQMW 350
           SGATIKVCGGRGEQNYRQ+QFGGSAEQVALAKQRVDEYIYSQL+RQAG QPTA+QMW
Sbjct: 301 SGATIKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 356

[Close]

BLAST of Sed0020404 vs. NCBI nr
Match: XP_023005036.1 (poly(rC)-binding protein 4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 569.3 bits (1466), Expect = 2.3e-158
Identity = 307/357 (85.99%), Postives = 322/357 (90.20%), Query Frame = 0


Query: 1   MQPSNFPLYPSMPAKP------PLPGSVFLSKPALA-GNKRRRDDDPSAPNSDPAADVSA 60
           MQ  + P+YPSMPAK       PLPG+V +SKP  A   KRRR+DDP  P S+ A DV A
Sbjct: 1   MQSGDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSE-AVDVLA 60

Query: 61  PKR-PKPHDVLFRIVVPSSQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIIS 120
           PKR  K HDVLFRIVVPS QIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIIS
Sbjct: 61  PKRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIIS 120

Query: 121 SKDNENLVTDAEKALQQIAALILKDDGTSTEELKVGAGHVAANTIRLLIAGSQAGFLIGA 180
           SKD EN VTDAEKALQQIAALILK+DGTS EELKVG GHVAANTIRLLIAGSQAG LIGA
Sbjct: 121 SKDKENTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGA 180

Query: 181 SGQNIEQLRNYSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVS 240
           SGQNIE+LRN SGA++TILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRV+
Sbjct: 181 SGQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVN 240

Query: 241 PSRQVISVSPTYNYNAIHPPQSYMDPTSVNYVNFEMLISETLVGGLIGIGGFNISRIRNE 300
           P RQVISVSPTYNYNA+HPPQSYMDPTSVNYV FEMLISETLVGGLIGIGGFNISRIRNE
Sbjct: 241 PPRQVISVSPTYNYNAVHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNE 300

Query: 301 SGATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQLVRQAGAQPTAVQMW 350
           SGATIKVCGGRGEQNYRQ+QFGGSAEQVALAKQRVDEYIYSQL+RQAG QPTA+QMW
Sbjct: 301 SGATIKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 356

[Close]

BLAST of Sed0020404 vs. NCBI nr
Match: XP_038875599.1 (flowering locus K homology domain-like isoform X1 [Benincasa hispida])

HSP 1 Score: 567.0 bits (1460), Expect = 1.1e-157
Identity = 303/357 (84.87%), Postives = 322/357 (90.20%), Query Frame = 0


Query: 1   MQPSNFPLYPS------MPAKPPLPGSVFLSKPA-LAGNKRRRDDDPSAPNSDPAADVSA 60
           MQP + PLYPS      +P   PLPG++ +S+P      KRRR+DDP  PNS+ A+DVSA
Sbjct: 1   MQPGDIPLYPSIPPMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDPIVPNSE-ASDVSA 60

Query: 61  PKR-PKPHDVLFRIVVPSSQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIIS 120
           PKR  K HDVLFRIVVPS QIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIIS
Sbjct: 61  PKRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIIS 120

Query: 121 SKDNENLVTDAEKALQQIAALILKDDGTSTEELKVGAGHVAANTIRLLIAGSQAGFLIGA 180
           SKDN+N VTDAEKALQQIAALILK+DGTS EELKVG GHVAANTIRLLIAGSQAG LIGA
Sbjct: 121 SKDNDNSVTDAEKALQQIAALILKEDGTSVEELKVGTGHVAANTIRLLIAGSQAGSLIGA 180

Query: 181 SGQNIEQLRNYSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVS 240
           SGQNIE+LRN SGA+ITILAPNQLPLCASAHESDRVVQISGD+PAVLKALEEIGNQLRV+
Sbjct: 181 SGQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLRVN 240

Query: 241 PSRQVISVSPTYNYNAIHPPQSYMDPTSVNYVNFEMLISETLVGGLIGIGGFNISRIRNE 300
           P RQVISVSPTYNYN +HPPQSYMDPTSVNYV FEMLISETLVGGLIGIGGFNISRIRNE
Sbjct: 241 PPRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNE 300

Query: 301 SGATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQLVRQAGAQPTAVQMW 350
           SGATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQ++RQAG Q TA+QMW
Sbjct: 301 SGATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQVIRQAGVQQTALQMW 356

[Close]

BLAST of Sed0020404 vs. NCBI nr
Match: KAG6592929.1 (RNA-binding KH domain-containing protein PEPPER, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 566.6 bits (1459), Expect = 1.5e-157
Identity = 307/353 (86.97%), Postives = 321/353 (90.93%), Query Frame = 0


Query: 1   MQPSNFPLYPSMPAKP--PLPGSVFLSKPALA-GNKRRRDDDPSAPNSDPAADVSAPKR- 60
           MQ  + P+YPSMPAK   PLPG+V +SKP  A   KRRR+DDP  P S+ A DVSAPKR 
Sbjct: 1   MQSGDIPVYPSMPAKAPLPLPGTVLVSKPGHAVTGKRRREDDPIVPYSE-AVDVSAPKRQ 60

Query: 61  PKPHDVLFRIVVPSSQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDN 120
            K HDVLFRIVVPS QIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKD 
Sbjct: 61  AKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDK 120

Query: 121 ENLVTDAEKALQQIAALILKDDGTSTEELKVGAGHVAANTIRLLIAGSQAGFLIGASGQN 180
           EN VTDAE ALQQIAALILK+DGTS EELKVG GHVAANTIRLLIAGSQAG LIGASGQN
Sbjct: 121 ENTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQN 180

Query: 181 IEQLRNYSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVSPSRQ 240
           IE+LRN SGA++TILAPNQLPLCASAHESDRVVQISGDV AVLKALEEIGNQLRV+P RQ
Sbjct: 181 IEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVNPPRQ 240

Query: 241 VISVSPTYNYNAIHPPQSYMDPTSVNYVNFEMLISETLVGGLIGIGGFNISRIRNESGAT 300
           VISVSPTYNYNAIHPPQSYMDPTSVNYV FEMLISETLVGGLIGIGGFNISRIRNESGAT
Sbjct: 241 VISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGAT 300

Query: 301 IKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQLVRQAGAQPTAVQMW 350
           IKVCGGRGEQNYRQ+QFGGSAEQVALAKQRVDEYIYSQL+RQAG QPTA+QMW
Sbjct: 301 IKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 352

[Close]

BLAST of Sed0020404 vs. NCBI nr
Match: XP_023005037.1 (poly(rC)-binding protein 4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 566.2 bits (1458), Expect = 1.9e-157
Identity = 305/353 (86.40%), Postives = 320/353 (90.65%), Query Frame = 0


Query: 5   NFPLYPSMPAKP------PLPGSVFLSKPALA-GNKRRRDDDPSAPNSDPAADVSAPKR- 64
           + P+YPSMPAK       PLPG+V +SKP  A   KRRR+DDP  P S+ A DV APKR 
Sbjct: 4   DIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSE-AVDVLAPKRQ 63

Query: 65  PKPHDVLFRIVVPSSQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDN 124
            K HDVLFRIVVPS QIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKD 
Sbjct: 64  AKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDK 123

Query: 125 ENLVTDAEKALQQIAALILKDDGTSTEELKVGAGHVAANTIRLLIAGSQAGFLIGASGQN 184
           EN VTDAEKALQQIAALILK+DGTS EELKVG GHVAANTIRLLIAGSQAG LIGASGQN
Sbjct: 124 ENTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQN 183

Query: 185 IEQLRNYSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVSPSRQ 244
           IE+LRN SGA++TILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRV+P RQ
Sbjct: 184 IEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVNPPRQ 243

Query: 245 VISVSPTYNYNAIHPPQSYMDPTSVNYVNFEMLISETLVGGLIGIGGFNISRIRNESGAT 304
           VISVSPTYNYNA+HPPQSYMDPTSVNYV FEMLISETLVGGLIGIGGFNISRIRNESGAT
Sbjct: 244 VISVSPTYNYNAVHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGAT 303

Query: 305 IKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQLVRQAGAQPTAVQMW 350
           IKVCGGRGEQNYRQ+QFGGSAEQVALAKQRVDEYIYSQL+RQAG QPTA+QMW
Sbjct: 304 IKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 355

[Close]

BLAST of Sed0020404 vs. ExPASy Swiss-Prot
Match: Q9SZH4 (RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 GN=PEP PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.5e-16
Identity = 64/197 (32.49%), Postives = 113/197 (57.36%), Query Frame = 0


Query: 37  DDDPSAPNSDPAADVSAPKR--PKPHDVLFRIVVPSSQIGKVIGKVGCRIQKVREETKAT 96
           D   +A  + P  + SA +R    P D +FR++VP +++G +IG+ G  I+K+ EET+A 
Sbjct: 47  DSLAAAETTFPDTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRAR 106

Query: 97  IKIADAVARYEERVIIISSKDN-ENLVTDAEKALQQIAALILKDDGTSTEELKVGAGHVA 156
           IK+ D      +R+++IS K+  E  ++ A  A+ ++   +        ++++  AG V 
Sbjct: 107 IKVLDGPVNTPDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQ-NAGSV- 166

Query: 157 ANTIRLLIAGSQAGFLIGASGQNIEQLRNYSGATITILAPNQLPLCASAHESDRVVQISG 216
            +++RLL+A +QA  LIG  G  I+ +   SGA++ IL+  + P  A+  + +R+V + G
Sbjct: 167 FSSVRLLVASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAA--QDERIVDLQG 226

Query: 217 DVPAVLKALEEIGNQLR 231
           +   +LKALE I   LR
Sbjct: 227 EALKILKALEAIVGHLR 239

[Close]

BLAST of Sed0020404 vs. ExPASy Swiss-Prot
Match: Q9SR13 (Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-15
Identity = 69/231 (29.87%), Postives = 115/231 (49.78%), Query Frame = 0


Query: 41  SAPNSDPAADVSAPKRPK-----PHDVLFRIVVPSSQIGKVIGKVGCRIQKVREETKATI 100
           S   S+P  D +     K     P + +FR++VP+ ++G +IG+ G  I+K+ EET+A I
Sbjct: 161 SLQKSEPEEDATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARI 220

Query: 101 KIADAVARYEERVIIISSKDN-ENLVTDAEKALQQIAALILKDDGTSTEELKVGAGHVAA 160
           KI D      ER +++S K+  E+ +  +   L ++   I+  DG   E  +  A   + 
Sbjct: 221 KILDGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIV--DGLDGEASQ--APPPSK 280

Query: 161 NTIRLLIAGSQAGFLIGASGQNIEQLRNYSGATITILAPNQLPLCASAHESDRVVQISGD 220
            + RLL+  SQAG LIG  G  ++ ++  S   + +L    LP+ A   + DRVV++ G+
Sbjct: 281 VSTRLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFAL--QDDRVVEVVGE 340

Query: 221 VPAVLKALEEIGNQLR-------VSPSRQVISVSPTYNYNAIHPPQSYMDP 259
             +V +ALE I + LR       + P  +     PT   + + PP     P
Sbjct: 341 PTSVHRALELIASHLRKFLVDRSIIPFFENQMQKPTRQMDHMPPPHQSWGP 385

[Close]

BLAST of Sed0020404 vs. ExPASy Swiss-Prot
Match: F4KDN0 (KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.6e-13
Identity = 62/204 (30.39%), Postives = 110/204 (53.92%), Query Frame = 0


Query: 37  DDDPSAPNSDPAADVSAPKRPKP-------HDVLFRIVVPSSQIGKVIGKVGCRIQKVRE 96
           D  P +  +  +   +A  +P P        DV+F+I+  +   G VIG  G  ++ +  
Sbjct: 420 DTHPHSFTTSASMANTATMKPPPSEVEVGNQDVVFKILCSTENAGGVIGTGGKVVRMLHS 479

Query: 97  ETKATIKIADAVARYEERVIIISSKDN-ENLVTDAEKALQQIAALILKDDGTSTEELKVG 156
           ET A I + + +   EER+I +++ +N E   + A+KA+  I + + +    +T ++ + 
Sbjct: 480 ETGAFINVGNTLDDCEERLIAVTASENPECQSSPAQKAIMLIFSRLFE---LATNKI-LD 539

Query: 157 AGHVAANTIRLLIAGSQAGFLIGASGQNIEQLRNYSGATITILAPNQLPLCASAHESDRV 216
            G  ++ T RL++  SQ G ++G  G  + ++R  +GA I IL   Q P C S  E+D+V
Sbjct: 540 NGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCIS--ENDQV 599

Query: 217 VQISGDVPAVLKALEEIGNQLRVS 233
           VQI+G+ P V +A+  I ++LR S
Sbjct: 600 VQITGEFPNVREAIFHITSRLRDS 617

[Close]

BLAST of Sed0020404 vs. ExPASy Swiss-Prot
Match: P58223 (KH domain-containing protein At4g18375 OS=Arabidopsis thaliana OX=3702 GN=At4g18375 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.3e-11
Identity = 59/196 (30.10%), Postives = 95/196 (48.47%), Query Frame = 0


Query: 41  SAPNSDPAADVSAPKRPKPHDVLFRIVVPSSQIGKVIGKVGCRIQKVREETKATIKIADA 100
           S  N +    +S  K  +   V++RI+ P   +G VIGK G  I  +R  TKA IK+ D 
Sbjct: 15  SESNRNQKRRISHDKINRDELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQ 74

Query: 101 VARYEERVIII-------------SSKDNENLVTDAEKALQQIAALILKDDGTSTEELKV 160
           +    +RVI I             +  +NE L    +  L+   A++  D+  +T   K 
Sbjct: 75  LHGCSQRVITIYCSVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVASDEENNT---KT 134

Query: 161 GAGHVAANTIRLLIAGSQAGFLIGASGQNIEQLRNYSGATITILAPN-QLPLCASAHESD 220
                     RLL+  SQ+  LIG +G+NI+++R  + A++ +++ +   P    A E D
Sbjct: 135 NVDRDDNKECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYD 194

Query: 221 RVVQISGDVPAVLKAL 223
            VV ISG+  +V +AL
Sbjct: 195 NVVVISGEPESVKQAL 207

[Close]

BLAST of Sed0020404 vs. ExPASy Swiss-Prot
Match: P57724 (Poly(rC)-binding protein 4 OS=Mus musculus OX=10090 GN=Pcbp4 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 9.6e-11
Identity = 75/300 (25.00%), Postives = 129/300 (43.00%), Query Frame = 0


Query: 65  RIVVPSSQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDNENLVTDAE 124
           R+++   ++G +IGK G  ++++RE++ A I I++            S  +    +T + 
Sbjct: 21  RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGST 80

Query: 125 KALQQIAALIL--KDDGTSTEELKVGAGHVAANTIRLLIAGSQAGFLIGASGQNIEQLRN 184
            A+    ++I    D+         G+      T+RL+I  SQ G LIG +G  I+++R 
Sbjct: 81  AAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 140

Query: 185 YSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEI----------GNQLRVS 244
            +GA + + A + LP     + ++R V +SG   A++  + +I          G  +   
Sbjct: 141 TTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYH 200

Query: 245 PSRQVISVSPTYN--------YNAIHPPQ--------------------SYMDPTSVNYV 304
           PS  + +V  + N        Y A+ P +                      MDP S    
Sbjct: 201 PSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGMDP-STQTS 260

Query: 305 NFEMLISETLVGGLIGIGGFNISRIRNESGATIKVCGGRGEQNYRQIQFGGSAEQVALAK 325
           + E L+   L+G +IG  G  IS IR  SGA IK+         R +   GS   +ALA+
Sbjct: 261 SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQ 302

[Close]

BLAST of Sed0020404 vs. ExPASy TrEMBL
Match: A0A6J1KTT5 (poly(RC)-binding protein 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498149 PE=4 SV=1)

HSP 1 Score: 569.3 bits (1466), Expect = 1.1e-158
Identity = 307/357 (85.99%), Postives = 322/357 (90.20%), Query Frame = 0


Query: 1   MQPSNFPLYPSMPAKP------PLPGSVFLSKPALA-GNKRRRDDDPSAPNSDPAADVSA 60
           MQ  + P+YPSMPAK       PLPG+V +SKP  A   KRRR+DDP  P S+ A DV A
Sbjct: 1   MQSGDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSE-AVDVLA 60

Query: 61  PKR-PKPHDVLFRIVVPSSQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIIS 120
           PKR  K HDVLFRIVVPS QIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIIS
Sbjct: 61  PKRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIIS 120

Query: 121 SKDNENLVTDAEKALQQIAALILKDDGTSTEELKVGAGHVAANTIRLLIAGSQAGFLIGA 180
           SKD EN VTDAEKALQQIAALILK+DGTS EELKVG GHVAANTIRLLIAGSQAG LIGA
Sbjct: 121 SKDKENTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGA 180

Query: 181 SGQNIEQLRNYSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVS 240
           SGQNIE+LRN SGA++TILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRV+
Sbjct: 181 SGQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVN 240

Query: 241 PSRQVISVSPTYNYNAIHPPQSYMDPTSVNYVNFEMLISETLVGGLIGIGGFNISRIRNE 300
           P RQVISVSPTYNYNA+HPPQSYMDPTSVNYV FEMLISETLVGGLIGIGGFNISRIRNE
Sbjct: 241 PPRQVISVSPTYNYNAVHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNE 300

Query: 301 SGATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQLVRQAGAQPTAVQMW 350
           SGATIKVCGGRGEQNYRQ+QFGGSAEQVALAKQRVDEYIYSQL+RQAG QPTA+QMW
Sbjct: 301 SGATIKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 356

[Close]

BLAST of Sed0020404 vs. ExPASy TrEMBL
Match: A0A6J1KS32 (poly(RC)-binding protein 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498149 PE=4 SV=1)

HSP 1 Score: 566.2 bits (1458), Expect = 9.3e-158
Identity = 305/353 (86.40%), Postives = 320/353 (90.65%), Query Frame = 0


Query: 5   NFPLYPSMPAKP------PLPGSVFLSKPALA-GNKRRRDDDPSAPNSDPAADVSAPKR- 64
           + P+YPSMPAK       PLPG+V +SKP  A   KRRR+DDP  P S+ A DV APKR 
Sbjct: 4   DIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSE-AVDVLAPKRQ 63

Query: 65  PKPHDVLFRIVVPSSQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDN 124
            K HDVLFRIVVPS QIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKD 
Sbjct: 64  AKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDK 123

Query: 125 ENLVTDAEKALQQIAALILKDDGTSTEELKVGAGHVAANTIRLLIAGSQAGFLIGASGQN 184
           EN VTDAEKALQQIAALILK+DGTS EELKVG GHVAANTIRLLIAGSQAG LIGASGQN
Sbjct: 124 ENTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQN 183

Query: 185 IEQLRNYSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVSPSRQ 244
           IE+LRN SGA++TILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRV+P RQ
Sbjct: 184 IEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVNPPRQ 243

Query: 245 VISVSPTYNYNAIHPPQSYMDPTSVNYVNFEMLISETLVGGLIGIGGFNISRIRNESGAT 304
           VISVSPTYNYNA+HPPQSYMDPTSVNYV FEMLISETLVGGLIGIGGFNISRIRNESGAT
Sbjct: 244 VISVSPTYNYNAVHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGAT 303

Query: 305 IKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQLVRQAGAQPTAVQMW 350
           IKVCGGRGEQNYRQ+QFGGSAEQVALAKQRVDEYIYSQL+RQAG QPTA+QMW
Sbjct: 304 IKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 355

[Close]

BLAST of Sed0020404 vs. ExPASy TrEMBL
Match: A0A6J1H6G7 (flowering locus K homology domain-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460958 PE=4 SV=1)

HSP 1 Score: 564.3 bits (1453), Expect = 3.5e-157
Identity = 306/353 (86.69%), Postives = 320/353 (90.65%), Query Frame = 0


Query: 1   MQPSNFPLYPSMPAKP--PLPGSVFLSKPALA-GNKRRRDDDPSAPNSDPAADVSAPKR- 60
           MQ  + P+YPSMPAK   PLPG+V +SK   A   KRRR+DDP    S+ A DVSAPKR 
Sbjct: 1   MQSGDIPVYPSMPAKAPLPLPGTVLVSKSGHAVTGKRRREDDPIVSYSE-AVDVSAPKRQ 60

Query: 61  PKPHDVLFRIVVPSSQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDN 120
            K HDVLFRIVVPS QIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKD 
Sbjct: 61  AKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDK 120

Query: 121 ENLVTDAEKALQQIAALILKDDGTSTEELKVGAGHVAANTIRLLIAGSQAGFLIGASGQN 180
           EN VTDAE ALQQIAALILK+DGTS EELKVG GHVAANTIRLLIAGSQAG LIGASGQN
Sbjct: 121 ENTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQN 180

Query: 181 IEQLRNYSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVSPSRQ 240
           IE+LRN SGA++TILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRV+P RQ
Sbjct: 181 IEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVNPPRQ 240

Query: 241 VISVSPTYNYNAIHPPQSYMDPTSVNYVNFEMLISETLVGGLIGIGGFNISRIRNESGAT 300
           VISVSPTYNYNAIHPPQSYMDPTSVNYV FEMLISETLVGGLIGIGGFNISRIRNESGAT
Sbjct: 241 VISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGAT 300

Query: 301 IKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQLVRQAGAQPTAVQMW 350
           IKVCGGRGEQNYRQ+QFGGSAEQVALAKQRVDEYIYSQL+RQAG QPTA+QMW
Sbjct: 301 IKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 352

[Close]

BLAST of Sed0020404 vs. ExPASy TrEMBL
Match: A0A6J1H7W9 (flowering locus K homology domain-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460958 PE=4 SV=1)

HSP 1 Score: 561.2 bits (1445), Expect = 3.0e-156
Identity = 304/349 (87.11%), Postives = 318/349 (91.12%), Query Frame = 0


Query: 5   NFPLYPSMPAKP--PLPGSVFLSKPALA-GNKRRRDDDPSAPNSDPAADVSAPKR-PKPH 64
           + P+YPSMPAK   PLPG+V +SK   A   KRRR+DDP    S+ A DVSAPKR  K H
Sbjct: 4   DIPVYPSMPAKAPLPLPGTVLVSKSGHAVTGKRRREDDPIVSYSE-AVDVSAPKRQAKAH 63

Query: 65  DVLFRIVVPSSQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDNENLV 124
           DVLFRIVVPS QIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKD EN V
Sbjct: 64  DVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKENTV 123

Query: 125 TDAEKALQQIAALILKDDGTSTEELKVGAGHVAANTIRLLIAGSQAGFLIGASGQNIEQL 184
           TDAE ALQQIAALILK+DGTS EELKVG GHVAANTIRLLIAGSQAG LIGASGQNIE+L
Sbjct: 124 TDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKL 183

Query: 185 RNYSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVSPSRQVISV 244
           RN SGA++TILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRV+P RQVISV
Sbjct: 184 RNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVNPPRQVISV 243

Query: 245 SPTYNYNAIHPPQSYMDPTSVNYVNFEMLISETLVGGLIGIGGFNISRIRNESGATIKVC 304
           SPTYNYNAIHPPQSYMDPTSVNYV FEMLISETLVGGLIGIGGFNISRIRNESGATIKVC
Sbjct: 244 SPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKVC 303

Query: 305 GGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQLVRQAGAQPTAVQMW 350
           GGRGEQNYRQ+QFGGSAEQVALAKQRVDEYIYSQL+RQAG QPTA+QMW
Sbjct: 304 GGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 351

[Close]

BLAST of Sed0020404 vs. ExPASy TrEMBL
Match: A0A1S3CB11 (RNA-binding KH domain-containing protein PEPPER-like OS=Cucumis melo OX=3656 GN=LOC103498803 PE=4 SV=1)

HSP 1 Score: 559.7 bits (1441), Expect = 8.7e-156
Identity = 303/357 (84.87%), Postives = 320/357 (89.64%), Query Frame = 0


Query: 1   MQPSNFPLYPSMPA------KPPLPGSVFLSKPA-LAGNKRRRDDDPSAPNSDPAADVSA 60
           MQP + PLYPSMPA        PLPG++ +S+P      KRRR+DD    NSD A+DVSA
Sbjct: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDLIVSNSD-ASDVSA 60

Query: 61  PKR-PKPHDVLFRIVVPSSQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIIS 120
           PKR  K HDVLFRIVVPS QIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIIS
Sbjct: 61  PKRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIIS 120

Query: 121 SKDNENLVTDAEKALQQIAALILKDDGTSTEELKVGAGHVAANTIRLLIAGSQAGFLIGA 180
           SKDNEN VTDAEKALQQIAALILK+DG+S EELKVG GHVAANTIRLLIAGSQAG LIGA
Sbjct: 121 SKDNENSVTDAEKALQQIAALILKEDGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGA 180

Query: 181 SGQNIEQLRNYSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVS 240
           SGQNIE+LRN SGA+ITILAPNQLPLCASAHESDRVVQISGD+ AVLKALEEIGNQLRV+
Sbjct: 181 SGQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDILAVLKALEEIGNQLRVN 240

Query: 241 PSRQVISVSPTYNYNAIHPPQSYMDPTSVNYVNFEMLISETLVGGLIGIGGFNISRIRNE 300
           P RQVISVSPTYNYN +HPPQSYMDPTSVNYV FEMLISETLVGGLIGIGGFNISRIRNE
Sbjct: 241 PPRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNE 300

Query: 301 SGATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQLVRQAGAQPTAVQMW 350
           SGATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQ++RQAG Q TA+QMW
Sbjct: 301 SGATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQVIRQAGVQQTALQMW 356

[Close]

BLAST of Sed0020404 vs. TAIR 10
Match: AT5G15270.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 110.9 bits (276), Expect = 2.1e-24
Identity = 91/289 (31.49%), Postives = 145/289 (50.17%), Query Frame = 0


Query: 61  DVLFRIVVPSSQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSK------ 120
           D +FR + P  +IG VIG+ G  ++++R +T++ I+I +A+   +ERVI I S       
Sbjct: 49  DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108

Query: 121 --DNENLVTDAEKALQQIAALILKDDGTSTEELKVGAGHVAANTIRLLIAGSQAGFLIGA 180
             D E +++ A+ AL +I   ++ DD  S E+   G   V   T +LL+   Q G ++G 
Sbjct: 109 FGDGEKVLSPAQDALFRIHDRVVADDARS-EDSPEGEKQV---TAKLLVPSDQIGCILGR 168

Query: 181 SGQNIEQLRNYSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVS 240
            GQ ++ +R+ +GA I I+    +PLCA    SD ++QISG+V  V KAL +I ++L  +
Sbjct: 169 GGQIVQNIRSETGAQIRIVKDRNMPLCAL--NSDELIQISGEVLIVKKALLQIASRLHEN 228

Query: 241 PSRQVISVSPTYNYNA---------------------------------IHPPQSYMDPT 300
           PSR    +S +  Y A                                   PP++  DP 
Sbjct: 229 PSRSQNLLSSSGGYPAGSLMSHAGGPRLVGLAPLMGSYGRDAGDWSRPLYQPPRN--DPP 288

Query: 301 SVNYVNFEMLISET-LVGGLIGIGGFNISRIRNESGATIKVCGGRGEQN 308
           +  +  F  L+S    +  +IG GG  I+++R E+ ATIKV   R E N
Sbjct: 289 ATEF--FIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGN 327

[Close]

BLAST of Sed0020404 vs. TAIR 10
Match: AT5G15270.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 110.9 bits (276), Expect = 2.1e-24
Identity = 91/289 (31.49%), Postives = 145/289 (50.17%), Query Frame = 0


Query: 61  DVLFRIVVPSSQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSK------ 120
           D +FR + P  +IG VIG+ G  ++++R +T++ I+I +A+   +ERVI I S       
Sbjct: 49  DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108

Query: 121 --DNENLVTDAEKALQQIAALILKDDGTSTEELKVGAGHVAANTIRLLIAGSQAGFLIGA 180
             D E +++ A+ AL +I   ++ DD  S E+   G   V   T +LL+   Q G ++G 
Sbjct: 109 FGDGEKVLSPAQDALFRIHDRVVADDARS-EDSPEGEKQV---TAKLLVPSDQIGCILGR 168

Query: 181 SGQNIEQLRNYSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVS 240
            GQ ++ +R+ +GA I I+    +PLCA    SD ++QISG+V  V KAL +I ++L  +
Sbjct: 169 GGQIVQNIRSETGAQIRIVKDRNMPLCAL--NSDELIQISGEVLIVKKALLQIASRLHEN 228

Query: 241 PSRQVISVSPTYNYNA---------------------------------IHPPQSYMDPT 300
           PSR    +S +  Y A                                   PP++  DP 
Sbjct: 229 PSRSQNLLSSSGGYPAGSLMSHAGGPRLVGLAPLMGSYGRDAGDWSRPLYQPPRN--DPP 288

Query: 301 SVNYVNFEMLISET-LVGGLIGIGGFNISRIRNESGATIKVCGGRGEQN 308
           +  +  F  L+S    +  +IG GG  I+++R E+ ATIKV   R E N
Sbjct: 289 ATEF--FIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGN 327

[Close]

BLAST of Sed0020404 vs. TAIR 10
Match: AT1G14170.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 102.1 bits (253), Expect = 9.5e-22
Identity = 80/269 (29.74%), Postives = 138/269 (51.30%), Query Frame = 0


Query: 60  HDVLFRIVVPSSQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDNE-- 119
           HD ++R + P  + G +IGK G   +++R ETK+ ++I +A+   EERV+ + S + E  
Sbjct: 9   HDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN 68

Query: 120 ------NLVTDAEKALQQIAALIL----KDDGTSTEELKVGAGHVAANTIRLLIAGSQAG 179
                  LV  A  AL ++  +++    +DDGT  +      G     T+R+L+   Q G
Sbjct: 69  HFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDN---DLGEKQTVTVRMLVPSDQIG 128

Query: 180 FLIGASGQNIEQLRNYSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGN 239
            +IG  GQ I+ LRN + A I ++  + LP CA     D ++ I G+   V +AL ++ +
Sbjct: 129 CVIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVAS 188

Query: 240 QLRVSPSR-QVISVSPTYNYNAIHPPQSYMDPTSVNYVNFEMLISETL------------ 299
            L  +PSR Q + +S   + +++H P + +   ++   +    +   +            
Sbjct: 189 LLHDNPSRFQHLLLSS--SSSSMHQPGAMLMSAALTSSHRNYAVRRDIADAREFCVCFIC 248

[Close]

BLAST of Sed0020404 vs. TAIR 10
Match: AT1G14170.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-20
Identity = 79/268 (29.48%), Postives = 137/268 (51.12%), Query Frame = 0


Query: 61  DVLFRIVVPSSQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDNE--- 120
           D ++R + P  + G +IGK G   +++R ETK+ ++I +A+   EERV+ + S + E   
Sbjct: 18  DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 77

Query: 121 -----NLVTDAEKALQQIAALIL----KDDGTSTEELKVGAGHVAANTIRLLIAGSQAGF 180
                 LV  A  AL ++  +++    +DDGT  +      G     T+R+L+   Q G 
Sbjct: 78  FGDDGELVCPALDALFKVHDMVVADADQDDGTDDDN---DLGEKQTVTVRMLVPSDQIGC 137

Query: 181 LIGASGQNIEQLRNYSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQ 240
           +IG  GQ I+ LRN + A I ++  + LP CA     D ++ I G+   V +AL ++ + 
Sbjct: 138 VIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASL 197

Query: 241 LRVSPSR-QVISVSPTYNYNAIHPPQSYMDPTSVNYVNFEMLISETL------------- 300
           L  +PSR Q + +S   + +++H P + +   ++   +    +   +             
Sbjct: 198 LHDNPSRFQHLLLSS--SSSSMHQPGAMLMSAALTSSHRNYAVRRDIADAREFCVCFICP 257

[Close]

BLAST of Sed0020404 vs. TAIR 10
Match: AT1G14170.3 (RNA-binding KH domain-containing protein )

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-20
Identity = 79/268 (29.48%), Postives = 137/268 (51.12%), Query Frame = 0


Query: 61  DVLFRIVVPSSQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDNE--- 120
           D ++R + P  + G +IGK G   +++R ETK+ ++I +A+   EERV+ + S + E   
Sbjct: 43  DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 102

Query: 121 -----NLVTDAEKALQQIAALIL----KDDGTSTEELKVGAGHVAANTIRLLIAGSQAGF 180
                 LV  A  AL ++  +++    +DDGT  +      G     T+R+L+   Q G 
Sbjct: 103 FGDDGELVCPALDALFKVHDMVVADADQDDGTDDDN---DLGEKQTVTVRMLVPSDQIGC 162

Query: 181 LIGASGQNIEQLRNYSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQ 240
           +IG  GQ I+ LRN + A I ++  + LP CA     D ++ I G+   V +AL ++ + 
Sbjct: 163 VIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASL 222

Query: 241 LRVSPSR-QVISVSPTYNYNAIHPPQSYMDPTSVNYVNFEMLISETL------------- 300
           L  +PSR Q + +S   + +++H P + +   ++   +    +   +             
Sbjct: 223 LHDNPSRFQHLLLSS--SSSSMHQPGAMLMSAALTSSHRNYAVRRDIADAREFCVCFICP 282

The following BLAST results are available for this feature:

BLAST of Sed0020404 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514318.1	1.3e-158	85.99	poly(rC)-binding protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_023005036.1	2.3e-158	85.99	poly(rC)-binding protein 4-like isoform X1 [Cucurbita maxima]	[more]
XP_038875599.1	1.1e-157	84.87	flowering locus K homology domain-like isoform X1 [Benincasa hispida]	[more]
KAG6592929.1	1.5e-157	86.97	RNA-binding KH domain-containing protein PEPPER, partial [Cucurbita argyrosperma...	[more]
XP_023005037.1	1.9e-157	86.40	poly(rC)-binding protein 4-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Sed0020404 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZH4	1.5e-16	32.49	RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SR13	1.3e-15	29.87	Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV...	[more]
F4KDN0	4.6e-13	30.39	KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 S...	[more]
P58223	3.3e-11	30.10	KH domain-containing protein At4g18375 OS=Arabidopsis thaliana OX=3702 GN=At4g18...	[more]
P57724	9.6e-11	25.00	Poly(rC)-binding protein 4 OS=Mus musculus OX=10090 GN=Pcbp4 PE=1 SV=1	[more]

BLAST of Sed0020404 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KTT5	1.1e-158	85.99	poly(RC)-binding protein 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1KS32	9.3e-158	86.40	poly(RC)-binding protein 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1H6G7	3.5e-157	86.69	flowering locus K homology domain-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1H7W9	3.0e-156	87.11	flowering locus K homology domain-like isoform X2 OS=Cucurbita moschata OX=3662 ...	[more]
A0A1S3CB11	8.7e-156	84.87	RNA-binding KH domain-containing protein PEPPER-like OS=Cucumis melo OX=3656 GN=...	[more]

BLAST of Sed0020404 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15270.2	2.1e-24	31.49	RNA-binding KH domain-containing protein	[more]
AT5G15270.1	2.1e-24	31.49	RNA-binding KH domain-containing protein	[more]
AT1G14170.2	9.5e-22	29.74	RNA-binding KH domain-containing protein	[more]
AT1G14170.1	1.1e-20	29.48	RNA-binding KH domain-containing protein	[more]
AT1G14170.3	1.1e-20	29.48	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 262..332 e-value: 1.9E-5 score: 34.1 coord: 153..230 e-value: 1.4E-8 score: 44.5 coord: 60..135 e-value: 1.2E-8 score: 44.7
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 256..335 e-value: 9.6E-14 score: 52.8
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 60..137 e-value: 2.9E-14 score: 54.5
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 153..232 e-value: 1.7E-15 score: 58.5
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 150..230
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 58..131
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 257..336
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 156..225 e-value: 5.8E-12 score: 45.3 coord: 267..328 e-value: 3.9E-10 score: 39.4 coord: 65..128 e-value: 2.3E-10 score: 40.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	PANTHER	PTHR10288:SF265	POLY(RC)-BINDING PROTEIN 4-LIKE	coord: 27..343
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 27..343
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 263..327 score: 12.64248
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 154..225 score: 14.529167
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 61..127 score: 14.529167
None	No IPR available	CDD	cd00105	KH-I	coord: 285..327 e-value: 1.43965E-4 score: 37.5396
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 156..225 e-value: 2.36118E-16 score: 70.5831
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 64..114 e-value: 4.04772E-13 score: 61.7235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020404.1	Sed0020404.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding