Sed0020267 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCATTCACAAATATTCCGACTTTTACAGATTCGAAGTTGAATTTTTCTTTTATTTTTTTATTTTTTTCGAATTGAAAAATTCGTACTTTTTTTGGAAATGGGTAACAGTTTAAGGTGCTGTTTGGCTTGTGTTCTTCCCTGTGGAGCTCTAGATTTGATCCGAATCGTCCATTTGAACGGCCACGTGGAAGAAATCGCCCATCCGATCACCGCCGGCGAGATTCTAAAAGCCAACCCAAATCACGTTCTGAGTAAACCGTCTTCACAAGGAGTGGTTCGCCGGATTCTCATCCTCTCGCCGGAATCCGACCTCAAAAGGGGCAGTATCTATTTCTTGATTCCGGCCACTTCTCTGCCTGAAAAGAAAAGAAACGCCTTCAAAAATCCTTCCAAAAAACCCAAGAATTTTTCCGCCGCCGCCGCAGACGGTGGCGCTTTTCCCTCCGATAAGAAACCGTCGCGGCGGGACCGCCGCGGCGGCCGGGTGGTTGTATGGCGGCCCCATTTAGAGAGCATCAGGGAAGACTGAAAAAAATGTAAACTTTATTTTCGCCGGCGCCGGAATTGGGAAATGAACCGGAGCGGTAATTATGGGGTTATTTTTTTTTTTTACTGGCTGGTAAGTTTATTACCATACAGTTTTTATCCGGGTTGTGAAATGTTGAGAGGGAGTAAAAAAAAAAAATCAGTGACTCGGATTTTTTTTTTCATACGTTTTGTAAACGTTTGGAAATTGTATTTACAGTTTCTCGAGAAGTTGTAAATTGAATATATCGTTTTTTTTTCTTCTCCTTTTCCTTAA CCCATTCACAAATATTCCGACTTTTACAGATTCGAAGTTGAATTTTTCTTTTATTTTTTTATTTTTTTCGAATTGAAAAATTCGTACTTTTTTTGGAAATGGGTAACAGTTTAAGGTGCTGTTTGGCTTGTGTTCTTCCCTGTGGAGCTCTAGATTTGATCCGAATCGTCCATTTGAACGGCCACGTGGAAGAAATCGCCCATCCGATCACCGCCGGCGAGATTCTAAAAGCCAACCCAAATCACGTTCTGAGTAAACCGTCTTCACAAGGAGTGGTTCGCCGGATTCTCATCCTCTCGCCGGAATCCGACCTCAAAAGGGGCAGTATCTATTTCTTGATTCCGGCCACTTCTCTGCCTGAAAAGAAAAGAAACGCCTTCAAAAATCCTTCCAAAAAACCCAAGAATTTTTCCGCCGCCGCCGCAGACGGTGGCGCTTTTCCCTCCGATAAGAAACCGTCGCGGCGGGACCGCCGCGGCGGCCGGGTGGTTGTATGGCGGCCCCATTTAGAGAGCATCAGGGAAGACTGAAAAAAATGTAAACTTTATTTTCGCCGGCGCCGGAATTGGGAAATGAACCGGAGCGGTAATTATGGGGTTATTTTTTTTTTTTACTGGCTGGTAAGTTTATTACCATACAGTTTTTATCCGGGTTGTGAAATGTTGAGAGGGAGTAAAAAAAAAAAATCAGTGACTCGGATTTTTTTTTTCATACGTTTTGTAAACGTTTGGAAATTGTATTTACAGTTTCTCGAGAAGTTGTAAATTGAATATATCGTTTTTTTTTCTTCTCCTTTTCCTTAA ATGGGTAACAGTTTAAGGTGCTGTTTGGCTTGTGTTCTTCCCTGTGGAGCTCTAGATTTGATCCGAATCGTCCATTTGAACGGCCACGTGGAAGAAATCGCCCATCCGATCACCGCCGGCGAGATTCTAAAAGCCAACCCAAATCACGTTCTGAGTAAACCGTCTTCACAAGGAGTGGTTCGCCGGATTCTCATCCTCTCGCCGGAATCCGACCTCAAAAGGGGCAGTATCTATTTCTTGATTCCGGCCACTTCTCTGCCTGAAAAGAAAAGAAACGCCTTCAAAAATCCTTCCAAAAAACCCAAGAATTTTTCCGCCGCCGCCGCAGACGGTGGCGCTTTTCCCTCCGATAAGAAACCGTCGCGGCGGGACCGCCGCGGCGGCCGGGTGGTTGTATGGCGGCCCCATTTAGAGAGCATCAGGGAAGACTGA MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRNAFKNPSKKPKNFSAAAADGGAFPSDKKPSRRDRRGGRVVVWRPHLESIRED Homology
BLAST of Sed0020267 vs. NCBI nr
Match: XP_038902054.1 (uncharacterized protein LOC120088703 [Benincasa hispida]) HSP 1 Score: 237.7 bits (605), Expect = 6.4e-59 Identity = 125/154 (81.17%), Postives = 135/154 (87.66%), Query Frame = 0
BLAST of Sed0020267 vs. NCBI nr
Match: XP_004149378.1 (uncharacterized protein LOC101207122 [Cucumis sativus] >KGN47230.1 hypothetical protein Csa_017034 [Cucumis sativus]) HSP 1 Score: 234.6 bits (597), Expect = 5.4e-58 Identity = 123/154 (79.87%), Postives = 133/154 (86.36%), Query Frame = 0
BLAST of Sed0020267 vs. NCBI nr
Match: XP_023007260.1 (uncharacterized protein LOC111499799 [Cucurbita maxima]) HSP 1 Score: 234.6 bits (597), Expect = 5.4e-58 Identity = 126/152 (82.89%), Postives = 133/152 (87.50%), Query Frame = 0
BLAST of Sed0020267 vs. NCBI nr
Match: XP_023534513.1 (uncharacterized protein LOC111796057 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 234.2 bits (596), Expect = 7.1e-58 Identity = 126/152 (82.89%), Postives = 133/152 (87.50%), Query Frame = 0
BLAST of Sed0020267 vs. NCBI nr
Match: XP_022944509.1 (uncharacterized protein LOC111448946 [Cucurbita moschata]) HSP 1 Score: 232.6 bits (592), Expect = 2.1e-57 Identity = 122/150 (81.33%), Postives = 129/150 (86.00%), Query Frame = 0
BLAST of Sed0020267 vs. ExPASy TrEMBL
Match: A0A6J1L2H4 (uncharacterized protein LOC111499799 OS=Cucurbita maxima OX=3661 GN=LOC111499799 PE=4 SV=1) HSP 1 Score: 234.6 bits (597), Expect = 2.6e-58 Identity = 126/152 (82.89%), Postives = 133/152 (87.50%), Query Frame = 0
BLAST of Sed0020267 vs. ExPASy TrEMBL
Match: A0A0A0KBY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G217470 PE=4 SV=1) HSP 1 Score: 234.6 bits (597), Expect = 2.6e-58 Identity = 123/154 (79.87%), Postives = 133/154 (86.36%), Query Frame = 0
BLAST of Sed0020267 vs. ExPASy TrEMBL
Match: A0A6J1G7P3 (uncharacterized protein LOC111451584 OS=Cucurbita moschata OX=3662 GN=LOC111451584 PE=4 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 1.0e-57 Identity = 125/152 (82.24%), Postives = 132/152 (86.84%), Query Frame = 0
BLAST of Sed0020267 vs. ExPASy TrEMBL
Match: A0A6J1FWT9 (uncharacterized protein LOC111448946 OS=Cucurbita moschata OX=3662 GN=LOC111448946 PE=4 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 1.0e-57 Identity = 122/150 (81.33%), Postives = 129/150 (86.00%), Query Frame = 0
BLAST of Sed0020267 vs. ExPASy TrEMBL
Match: A0A5A7UMR0 (6,7-dimethyl-8-ribityllumazine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold55219G00010 PE=4 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 1.4e-56 Identity = 122/156 (78.21%), Postives = 132/156 (84.62%), Query Frame = 0
BLAST of Sed0020267 vs. TAIR 10
Match: AT1G06980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 159 Blast hits to 159 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 175.6 bits (444), Expect = 2.8e-44 Identity = 99/168 (58.93%), Postives = 110/168 (65.48%), Query Frame = 0
BLAST of Sed0020267 vs. TAIR 10
Match: AT2G30230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06980.1); Has 167 Blast hits to 167 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 171.0 bits (432), Expect = 6.9e-43 Identity = 99/175 (56.57%), Postives = 113/175 (64.57%), Query Frame = 0
BLAST of Sed0020267 vs. TAIR 10
Match: AT1G29195.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 127.1 bits (318), Expect = 1.1e-29 Identity = 79/188 (42.02%), Postives = 106/188 (56.38%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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