Sed0020267 (gene) Chayote v1

Overview


Name	Sed0020267
Type	gene
Organism	Sechium edule (Chayote v1)
Description	6,7-dimethyl-8-ribityllumazine synthase
Location	LG01: 6017128 .. 6017930 (+)
RNA-Seq Expression	Sed0020267
Synteny	Sed0020267

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCATTCACAAATATTCCGACTTTTACAGATTCGAAGTTGAATTTTTCTTTTATTTTTTTATTTTTTTCGAATTGAAAAATTCGTACTTTTTTTGGAAATGGGTAACAGTTTAAGGTGCTGTTTGGCTTGTGTTCTTCCCTGTGGAGCTCTAGATTTGATCCGAATCGTCCATTTGAACGGCCACGTGGAAGAAATCGCCCATCCGATCACCGCCGGCGAGATTCTAAAAGCCAACCCAAATCACGTTCTGAGTAAACCGTCTTCACAAGGAGTGGTTCGCCGGATTCTCATCCTCTCGCCGGAATCCGACCTCAAAAGGGGCAGTATCTATTTCTTGATTCCGGCCACTTCTCTGCCTGAAAAGAAAAGAAACGCCTTCAAAAATCCTTCCAAAAAACCCAAGAATTTTTCCGCCGCCGCCGCAGACGGTGGCGCTTTTCCCTCCGATAAGAAACCGTCGCGGCGGGACCGCCGCGGCGGCCGGGTGGTTGTATGGCGGCCCCATTTAGAGAGCATCAGGGAAGACTGAAAAAAATGTAAACTTTATTTTCGCCGGCGCCGGAATTGGGAAATGAACCGGAGCGGTAATTATGGGGTTATTTTTTTTTTTTACTGGCTGGTAAGTTTATTACCATACAGTTTTTATCCGGGTTGTGAAATGTTGAGAGGGAGTAAAAAAAAAAAATCAGTGACTCGGATTTTTTTTTTCATACGTTTTGTAAACGTTTGGAAATTGTATTTACAGTTTCTCGAGAAGTTGTAAATTGAATATATCGTTTTTTTTTCTTCTCCTTTTCCTTAA

mRNA sequence

CCCATTCACAAATATTCCGACTTTTACAGATTCGAAGTTGAATTTTTCTTTTATTTTTTTATTTTTTTCGAATTGAAAAATTCGTACTTTTTTTGGAAATGGGTAACAGTTTAAGGTGCTGTTTGGCTTGTGTTCTTCCCTGTGGAGCTCTAGATTTGATCCGAATCGTCCATTTGAACGGCCACGTGGAAGAAATCGCCCATCCGATCACCGCCGGCGAGATTCTAAAAGCCAACCCAAATCACGTTCTGAGTAAACCGTCTTCACAAGGAGTGGTTCGCCGGATTCTCATCCTCTCGCCGGAATCCGACCTCAAAAGGGGCAGTATCTATTTCTTGATTCCGGCCACTTCTCTGCCTGAAAAGAAAAGAAACGCCTTCAAAAATCCTTCCAAAAAACCCAAGAATTTTTCCGCCGCCGCCGCAGACGGTGGCGCTTTTCCCTCCGATAAGAAACCGTCGCGGCGGGACCGCCGCGGCGGCCGGGTGGTTGTATGGCGGCCCCATTTAGAGAGCATCAGGGAAGACTGAAAAAAATGTAAACTTTATTTTCGCCGGCGCCGGAATTGGGAAATGAACCGGAGCGGTAATTATGGGGTTATTTTTTTTTTTTACTGGCTGGTAAGTTTATTACCATACAGTTTTTATCCGGGTTGTGAAATGTTGAGAGGGAGTAAAAAAAAAAAATCAGTGACTCGGATTTTTTTTTTCATACGTTTTGTAAACGTTTGGAAATTGTATTTACAGTTTCTCGAGAAGTTGTAAATTGAATATATCGTTTTTTTTTCTTCTCCTTTTCCTTAA

Coding sequence (CDS)

ATGGGTAACAGTTTAAGGTGCTGTTTGGCTTGTGTTCTTCCCTGTGGAGCTCTAGATTTGATCCGAATCGTCCATTTGAACGGCCACGTGGAAGAAATCGCCCATCCGATCACCGCCGGCGAGATTCTAAAAGCCAACCCAAATCACGTTCTGAGTAAACCGTCTTCACAAGGAGTGGTTCGCCGGATTCTCATCCTCTCGCCGGAATCCGACCTCAAAAGGGGCAGTATCTATTTCTTGATTCCGGCCACTTCTCTGCCTGAAAAGAAAAGAAACGCCTTCAAAAATCCTTCCAAAAAACCCAAGAATTTTTCCGCCGCCGCCGCAGACGGTGGCGCTTTTCCCTCCGATAAGAAACCGTCGCGGCGGGACCGCCGCGGCGGCCGGGTGGTTGTATGGCGGCCCCATTTAGAGAGCATCAGGGAAGACTGA

Protein sequence

MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRNAFKNPSKKPKNFSAAAADGGAFPSDKKPSRRDRRGGRVVVWRPHLESIRED

Homology

[Close]

BLAST of Sed0020267 vs. NCBI nr
Match: XP_038902054.1 (uncharacterized protein LOC120088703 [Benincasa hispida])

HSP 1 Score: 237.7 bits (605), Expect = 6.4e-59
Identity = 125/154 (81.17%), Postives = 135/154 (87.66%), Query Frame = 0


Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAG++LKANPNHVLSKPSSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGDVLKANPNHVLSKPSSQGVV 60

Query: 61  RRILILSPESDLKRGSIYFLIPATSLPEKKRNA---FKNPSKKPKNFS----AAAADGGA 120
           RRILILSPES+LKRGSIYFLIPATSLPEKKRNA    K PS+K K+ +    +AAADG +
Sbjct: 61  RRILILSPESELKRGSIYFLIPATSLPEKKRNAGTTLKTPSRKVKHCTVAAVSAAADGDS 120

Query: 121 F----PSDKKPSRRDRRGGRVVVWRPHLESIRED 144
           +     SDKKPSRR+RRG RVVVWRPHLESI ED
Sbjct: 121 YLSDVVSDKKPSRRERRGSRVVVWRPHLESISED 154

[Close]

BLAST of Sed0020267 vs. NCBI nr
Match: XP_004149378.1 (uncharacterized protein LOC101207122 [Cucumis sativus] >KGN47230.1 hypothetical protein Csa_017034 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 5.4e-58
Identity = 123/154 (79.87%), Postives = 133/154 (86.36%), Query Frame = 0


Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAG++LKANPNHVLSKPSSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGDVLKANPNHVLSKPSSQGVV 60

Query: 61  RRILILSPESDLKRGSIYFLIPATSLPEKKRNA---FKNPSKKPKNFSAAA----ADGGA 120
           RRILILSPES+LKRGSIYFLIP+TSLPEKKRNA    K PS+K KN + AA    AD  +
Sbjct: 61  RRILILSPESELKRGSIYFLIPSTSLPEKKRNAATTLKTPSRKVKNCTVAAVPTTADTDS 120

Query: 121 F----PSDKKPSRRDRRGGRVVVWRPHLESIRED 144
           +     SDKKPSRR+RRG RV+VWRPHLESI ED
Sbjct: 121 YLSDVVSDKKPSRRERRGSRVIVWRPHLESISED 154

[Close]

BLAST of Sed0020267 vs. NCBI nr
Match: XP_023007260.1 (uncharacterized protein LOC111499799 [Cucurbita maxima])

HSP 1 Score: 234.6 bits (597), Expect = 5.4e-58
Identity = 126/152 (82.89%), Postives = 133/152 (87.50%), Query Frame = 0


Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHL+GHVEEIAHPITAGE+LKANPNHVLSKPSSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLSGHVEEIAHPITAGEVLKANPNHVLSKPSSQGVV 60

Query: 61  RRILILSPESDLKRGSIYFLIPATSLPEKKRN---AFKNPSKKPKNFSAAA-ADGGAF-- 120
           RRILILSPES+LKRGSIYFLIPATSLPEKK+N    FKN SKK KN +AA   D  ++  
Sbjct: 61  RRILILSPESELKRGSIYFLIPATSLPEKKKNGGTTFKNSSKKTKNSTAAVPLDATSYLS 120

Query: 121 --PSDKKPSRRDRRGG-RVVVWRPHLESIRED 144
              SDKKPSRRDRRGG RVVVWRPHLESI ED
Sbjct: 121 DIVSDKKPSRRDRRGGSRVVVWRPHLESISED 152

[Close]

BLAST of Sed0020267 vs. NCBI nr
Match: XP_023534513.1 (uncharacterized protein LOC111796057 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234.2 bits (596), Expect = 7.1e-58
Identity = 126/152 (82.89%), Postives = 133/152 (87.50%), Query Frame = 0


Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHL+GHVEEIAHPITAGE+LKANPNHVLSKPSSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLSGHVEEIAHPITAGEVLKANPNHVLSKPSSQGVV 60

Query: 61  RRILILSPESDLKRGSIYFLIPATSLPEKKR---NAFKNPSKKPKNFSAAA-ADGGAF-- 120
           RRILILSPES+LKRGSIYFLIPATSLPEKK+   N FKN SKK KN +AA   D  ++  
Sbjct: 61  RRILILSPESELKRGSIYFLIPATSLPEKKKNGGNTFKNSSKKTKNSTAAVPVDTTSYLS 120

Query: 121 --PSDKKPSRRDRRGG-RVVVWRPHLESIRED 144
              SDKKPSRRDRRGG RVVVWRPHLESI ED
Sbjct: 121 DIVSDKKPSRRDRRGGSRVVVWRPHLESISED 152

[Close]

BLAST of Sed0020267 vs. NCBI nr
Match: XP_022944509.1 (uncharacterized protein LOC111448946 [Cucurbita moschata])

HSP 1 Score: 232.6 bits (592), Expect = 2.1e-57
Identity = 122/150 (81.33%), Postives = 129/150 (86.00%), Query Frame = 0


Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGE+LKANPNHVL+KPSSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEVLKANPNHVLTKPSSQGVV 60

Query: 61  RRILILSPESDLKRGSIYFLIPATSLPEKKRNA---FKNPSKKPKNFSAAAADGGAF--- 120
           RRILILSPES+LKRG+IYF+IPATS PEKKRNA    K PS K KN   A AD  ++   
Sbjct: 61  RRILILSPESELKRGTIYFVIPATSRPEKKRNAGSSLKTPSSKAKN-CTATADSDSYLSD 120

Query: 121 -PSDKKPSRRDRRGGRVVVWRPHLESIRED 144
             SDKKPSRRDRRG RVVVWRPHLESI ED
Sbjct: 121 VVSDKKPSRRDRRGARVVVWRPHLESISED 149

[Close]

BLAST of Sed0020267 vs. ExPASy TrEMBL
Match: A0A6J1L2H4 (uncharacterized protein LOC111499799 OS=Cucurbita maxima OX=3661 GN=LOC111499799 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.6e-58
Identity = 126/152 (82.89%), Postives = 133/152 (87.50%), Query Frame = 0


Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHL+GHVEEIAHPITAGE+LKANPNHVLSKPSSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLSGHVEEIAHPITAGEVLKANPNHVLSKPSSQGVV 60

Query: 61  RRILILSPESDLKRGSIYFLIPATSLPEKKRN---AFKNPSKKPKNFSAAA-ADGGAF-- 120
           RRILILSPES+LKRGSIYFLIPATSLPEKK+N    FKN SKK KN +AA   D  ++  
Sbjct: 61  RRILILSPESELKRGSIYFLIPATSLPEKKKNGGTTFKNSSKKTKNSTAAVPLDATSYLS 120

Query: 121 --PSDKKPSRRDRRGG-RVVVWRPHLESIRED 144
              SDKKPSRRDRRGG RVVVWRPHLESI ED
Sbjct: 121 DIVSDKKPSRRDRRGGSRVVVWRPHLESISED 152

[Close]

BLAST of Sed0020267 vs. ExPASy TrEMBL
Match: A0A0A0KBY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G217470 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.6e-58
Identity = 123/154 (79.87%), Postives = 133/154 (86.36%), Query Frame = 0


Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAG++LKANPNHVLSKPSSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGDVLKANPNHVLSKPSSQGVV 60

Query: 61  RRILILSPESDLKRGSIYFLIPATSLPEKKRNA---FKNPSKKPKNFSAAA----ADGGA 120
           RRILILSPES+LKRGSIYFLIP+TSLPEKKRNA    K PS+K KN + AA    AD  +
Sbjct: 61  RRILILSPESELKRGSIYFLIPSTSLPEKKRNAATTLKTPSRKVKNCTVAAVPTTADTDS 120

Query: 121 F----PSDKKPSRRDRRGGRVVVWRPHLESIRED 144
           +     SDKKPSRR+RRG RV+VWRPHLESI ED
Sbjct: 121 YLSDVVSDKKPSRRERRGSRVIVWRPHLESISED 154

[Close]

BLAST of Sed0020267 vs. ExPASy TrEMBL
Match: A0A6J1G7P3 (uncharacterized protein LOC111451584 OS=Cucurbita moschata OX=3662 GN=LOC111451584 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.0e-57
Identity = 125/152 (82.24%), Postives = 132/152 (86.84%), Query Frame = 0


Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHL+GHVEEIAHPITAGE+LKANPNHVLSKPSSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLSGHVEEIAHPITAGEVLKANPNHVLSKPSSQGVV 60

Query: 61  RRILILSPESDLKRGSIYFLIPATSLPEKKR---NAFKNPSKKPKNFSAAA-ADGGAF-- 120
           RRILILSPES+LKRGSIYFLIPATSLPEKK+   N FKN SKK KN +AA   D  ++  
Sbjct: 61  RRILILSPESELKRGSIYFLIPATSLPEKKKNGGNTFKNSSKKTKNSTAAVPVDATSYLS 120

Query: 121 --PSDKKPSRRDRR-GGRVVVWRPHLESIRED 144
              SDKKPSRRDRR G RVVVWRPHLESI ED
Sbjct: 121 DIVSDKKPSRRDRRSGSRVVVWRPHLESISED 152

[Close]

BLAST of Sed0020267 vs. ExPASy TrEMBL
Match: A0A6J1FWT9 (uncharacterized protein LOC111448946 OS=Cucurbita moschata OX=3662 GN=LOC111448946 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.0e-57
Identity = 122/150 (81.33%), Postives = 129/150 (86.00%), Query Frame = 0


Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGE+LKANPNHVL+KPSSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEVLKANPNHVLTKPSSQGVV 60

Query: 61  RRILILSPESDLKRGSIYFLIPATSLPEKKRNA---FKNPSKKPKNFSAAAADGGAF--- 120
           RRILILSPES+LKRG+IYF+IPATS PEKKRNA    K PS K KN   A AD  ++   
Sbjct: 61  RRILILSPESELKRGTIYFVIPATSRPEKKRNAGSSLKTPSSKAKN-CTATADSDSYLSD 120

Query: 121 -PSDKKPSRRDRRGGRVVVWRPHLESIRED 144
             SDKKPSRRDRRG RVVVWRPHLESI ED
Sbjct: 121 VVSDKKPSRRDRRGARVVVWRPHLESISED 149

[Close]

BLAST of Sed0020267 vs. ExPASy TrEMBL
Match: A0A5A7UMR0 (6,7-dimethyl-8-ribityllumazine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold55219G00010 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.4e-56
Identity = 122/156 (78.21%), Postives = 132/156 (84.62%), Query Frame = 0


Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEI HPITAG++LKANPNHVLSKPSSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEITHPITAGDVLKANPNHVLSKPSSQGVV 60

Query: 61  RRILILSPESDLKRGSIYFLIPATSLPEKKRNA---FKNPSKKPKNFS-----AAAADGG 120
           RRILILSPES+LKRGSIYFLIP+TSLPEKKRNA    K PS+K KN +      AAAD  
Sbjct: 61  RRILILSPESELKRGSIYFLIPSTSLPEKKRNAGTTLKTPSRKVKNCTVAAVPTAAADSD 120

Query: 121 AF----PSDKKPSRRDRR-GGRVVVWRPHLESIRED 144
           ++     SDKKPSRR+RR G RV+VWRPHLESI ED
Sbjct: 121 SYLSDVVSDKKPSRRERRSGSRVIVWRPHLESISED 156

[Close]

BLAST of Sed0020267 vs. TAIR 10
Match: AT1G06980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 159 Blast hits to 159 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-44
Identity = 99/168 (58.93%), Postives = 110/168 (65.48%), Query Frame = 0


Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNG+VEEI   ITAGEIL+ANPNHVLSKP SQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRSITAGEILQANPNHVLSKPCSQGVV 60

Query: 61  RRILILSPESDLKRGSIYFLIPATSLPEKKRNAFKNPSKKPKNFSAAAAD---------- 120
           R+ILILSPES+LKRGSIYFLIP +SLPEKKR     P +K KN    +AD          
Sbjct: 61  RKILILSPESELKRGSIYFLIPDSSLPEKKRRRKDTPRRK-KNLQNPSADAAGREIKGDE 120

Query: 121 ---------------GGAFPSDKKPSRRDRRGGRVVVWRPHLESIRED 144
                            +   + +  RR  R   V  WRP L+SI ED
Sbjct: 121 ECVKLCEKYLEEVVSSASTGKEHRHRRRHSRSASVSTWRPLLDSISED 167

[Close]

BLAST of Sed0020267 vs. TAIR 10
Match: AT2G30230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06980.1); Has 167 Blast hits to 167 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 171.0 bits (432), Expect = 6.9e-43
Identity = 99/175 (56.57%), Postives = 113/175 (64.57%), Query Frame = 0


Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNGHV+EI  P+TAGEIL+ANPNHVLSKP SQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVDEITSPMTAGEILQANPNHVLSKPCSQGVV 60

Query: 61  RRILILSPESDLKRGSIYFLIPATSLPEKKR-------NAFKNPSKKPKNFSA------A 120
           R+ILILSPES+LKRGSIYFLIP TS+PEKK+          K P +   + ++       
Sbjct: 61  RKILILSPESELKRGSIYFLIPDTSMPEKKKTKKRKELRCRKKPLESGNDINSDHVSTNK 120

Query: 121 AADGGAFP-----------SDKKPS--------RRDRRGGRVVVWRPHLESIRED 144
             DG               S+K  S        R+  R   V  WRPHL+SI ED
Sbjct: 121 DLDGHCLTLCEKYLEDVMLSEKMSSAGKENRHRRKHSRSASVSTWRPHLDSITED 175

[Close]

BLAST of Sed0020267 vs. TAIR 10
Match: AT1G29195.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-29
Identity = 79/188 (42.02%), Postives = 106/188 (56.38%), Query Frame = 0


Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSS---- 60
           M  ++RCC+AC+LPCGALD+IRIVH NGHVEEI+  ITA EI+KA+P HVL KPSS    
Sbjct: 1   MKETIRCCIACILPCGALDVIRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSPTSD 60

Query: 61  ---QGVV--RRILILSPESDLKRGSIYFLIPATSLPE------------------KKRNA 120
              + V+   +I+I+ PE++L+RG IYFL+PAT   +                  KKR+ 
Sbjct: 61  HDERDVISATKIVIVPPEAELQRGKIYFLMPATKSDKCAGGGKIRREKSNANAVVKKRSQ 120

Query: 121 FKNPSK--------------KPKNFSAAAADGG-----AFPSDKKPSRRDRRGGRVVVWR 143
           ++   +              K KN+                S+K  +++DRR GRV VWR
Sbjct: 121 YRRQHRDGDEKCNGGESNDVKDKNYEKDLLISSDRYLTEILSEKVATQKDRRKGRVGVWR 180

The following BLAST results are available for this feature:

BLAST of Sed0020267 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902054.1	6.4e-59	81.17	uncharacterized protein LOC120088703 [Benincasa hispida]	[more]
XP_004149378.1	5.4e-58	79.87	uncharacterized protein LOC101207122 [Cucumis sativus] >KGN47230.1 hypothetical ...	[more]
XP_023007260.1	5.4e-58	82.89	uncharacterized protein LOC111499799 [Cucurbita maxima]	[more]
XP_023534513.1	7.1e-58	82.89	uncharacterized protein LOC111796057 [Cucurbita pepo subsp. pepo]	[more]
XP_022944509.1	2.1e-57	81.33	uncharacterized protein LOC111448946 [Cucurbita moschata]	[more]

BLAST of Sed0020267 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0020267 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L2H4	2.6e-58	82.89	uncharacterized protein LOC111499799 OS=Cucurbita maxima OX=3661 GN=LOC111499799...	[more]
A0A0A0KBY5	2.6e-58	79.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G217470 PE=4 SV=1	[more]
A0A6J1G7P3	1.0e-57	82.24	uncharacterized protein LOC111451584 OS=Cucurbita moschata OX=3662 GN=LOC1114515...	[more]
A0A6J1FWT9	1.0e-57	81.33	uncharacterized protein LOC111448946 OS=Cucurbita moschata OX=3662 GN=LOC1114489...	[more]
A0A5A7UMR0	1.4e-56	78.21	6,7-dimethyl-8-ribityllumazine synthase OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Sed0020267 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06980.1	2.8e-44	58.93	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G30230.1	6.9e-43	56.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G29195.1	1.1e-29	42.02	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..142 e-value: 3.1E-33 score: 115.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..130
None	No IPR available	PANTHER	PTHR33052	DUF4228 DOMAIN PROTEIN-RELATED	coord: 1..143
None	No IPR available	PANTHER	PTHR33052:SF26	6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE	coord: 1..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020267.1	Sed0020267.1	mRNA