Sed0019904 (gene) Chayote v1

Overview
NameSed0019904
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRNA polymerase II elongation factor ELL3 isoform 1
LocationLG03: 8692120 .. 8692945 (-)
RNA-Seq ExpressionSed0019904
SyntenySed0019904
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCAAAAAGAGAAAAAAACATCCTTTAACAAAATCAATCCCCATTTTCATTCTCCACTCCAACGAAATCCCATTTTCTCATGGCAGAAACCAAGGATTCAAGCACCCACATAGTCGAAATCCCATTAGAACAAAATGAGCAAAACCAAATGCTTACGATCTCTGCAATCCAACAACACCCACTGCGGCAAATCTCCGAAAGCTCGGGCCATCTATTGCTGTTGAAACTCTGGCAGCGCGACGAGCATCTCTTCGGCCTCCGAATCGGCCGCCGAGAGACCAAATTGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCACGCCCTCTCCCTCACCCTCTTGTTCACTTCCTCCGATCCCAACGCTTGCCGCAAATGGTGGGTTCCCGCGGTGCCGGTGGCCGCAACGTCGGGCGTGTTCCTGATGGCGGTGCAGCTGAAGCTGTGGCTGCATTGGAAGGCGGCACGGCGGCTGCAGAGGGAGCGGAGCGAGAGCCGAGCGCTTACGAGATGCGTTCAAGAGCTGAGAATGAAAGGGTCTTGTTTTAATTTGGGTAAAGAGCCTCATGTTGGGAACAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGGGGCTTCTCACTTGGCTTTCTAGGAATTTTGTTGCTATTTCTCTTGCTTGCTTTTCAGGGCTTGTTTTTGCTGCTTCAAAGTTCATTCTTTGTGGGGTTTGAAGTGTTGTACGTAATTTTTGTCAATTTGGAAACTTATTGTCTAAATGGATCCAATTTAGAAGGAAATGTCAAAATGGGTTGTGATCAGCCTAATTT

mRNA sequence

GCCAAAAAGAGAAAAAAACATCCTTTAACAAAATCAATCCCCATTTTCATTCTCCACTCCAACGAAATCCCATTTTCTCATGGCAGAAACCAAGGATTCAAGCACCCACATAGTCGAAATCCCATTAGAACAAAATGAGCAAAACCAAATGCTTACGATCTCTGCAATCCAACAACACCCACTGCGGCAAATCTCCGAAAGCTCGGGCCATCTATTGCTGTTGAAACTCTGGCAGCGCGACGAGCATCTCTTCGGCCTCCGAATCGGCCGCCGAGAGACCAAATTGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCACGCCCTCTCCCTCACCCTCTTGTTCACTTCCTCCGATCCCAACGCTTGCCGCAAATGGTGGGTTCCCGCGGTGCCGGTGGCCGCAACGTCGGGCGTGTTCCTGATGGCGGTGCAGCTGAAGCTGTGGCTGCATTGGAAGGCGGCACGGCGGCTGCAGAGGGAGCGGAGCGAGAGCCGAGCGCTTACGAGATGCGTTCAAGAGCTGAGAATGAAAGGGTCTTGTTTTAATTTGGGTAAAGAGCCTCATGTTGGGAACAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGGGGCTTCTCACTTGGCTTTCTAGGAATTTTGTTGCTATTTCTCTTGCTTGCTTTTCAGGGCTTGTTTTTGCTGCTTCAAAGTTCATTCTTTGTGGGGTTTGAAGTGTTGTACGTAATTTTTGTCAATTTGGAAACTTATTGTCTAAATGGATCCAATTTAGAAGGAAATGTCAAAATGGGTTGTGATCAGCCTAATTT

Coding sequence (CDS)

ATGGCAGAAACCAAGGATTCAAGCACCCACATAGTCGAAATCCCATTAGAACAAAATGAGCAAAACCAAATGCTTACGATCTCTGCAATCCAACAACACCCACTGCGGCAAATCTCCGAAAGCTCGGGCCATCTATTGCTGTTGAAACTCTGGCAGCGCGACGAGCATCTCTTCGGCCTCCGAATCGGCCGCCGAGAGACCAAATTGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCACGCCCTCTCCCTCACCCTCTTGTTCACTTCCTCCGATCCCAACGCTTGCCGCAAATGGTGGGTTCCCGCGGTGCCGGTGGCCGCAACGTCGGGCGTGTTCCTGATGGCGGTGCAGCTGAAGCTGTGGCTGCATTGGAAGGCGGCACGGCGGCTGCAGAGGGAGCGGAGCGAGAGCCGAGCGCTTACGAGATGCGTTCAAGAGCTGAGAATGAAAGGGTCTTGTTTTAATTTGGGTAAAGAGCCTCATGTTGGGAACAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGGGGCTTCTCACTTGGCTTTCTAGGAATTTTGTTGCTATTTCTCTTGCTTGCTTTTCAGGGCTTGTTTTTGCTGCTTCAAAGTTCATTCTTTGTGGGGTTTGA

Protein sequence

MAETKDSSTHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLACFSGLVFAASKFILCGV
Homology
BLAST of Sed0019904 vs. NCBI nr
Match: XP_038905570.1 (uncharacterized protein LOC120091553 [Benincasa hispida] >XP_038905571.1 uncharacterized protein LOC120091553 [Benincasa hispida])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 174/216 (80.56%), Postives = 192/216 (88.89%), Query Frame = 0

Query: 1   MAETKDSSTHIVEIPLEQ--NEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLF 60
           MAETKDS  HIVEIP+EQ  + QNQ   IS IQ HPLRQISESSGHLLLLKLWQRDEHLF
Sbjct: 1   MAETKDSGAHIVEIPVEQENHTQNQNPMISVIQHHPLRQISESSGHLLLLKLWQRDEHLF 60

Query: 61  GLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWVPAVPVAATSG 120
           GLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDPN C+KWWVPAV + ATSG
Sbjct: 61  GLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPNVCKKWWVPAVAMGATSG 120

Query: 121 VFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSS 180
           VF++ VQLKLWL+WKA+ +LQRE++E+RALTRCVQELRMKGSCFNL KEP +GNRMKSSS
Sbjct: 121 VFVIVVQLKLWLYWKASGQLQREKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSS 180

Query: 181 VEIKWGLLTWLSRNFVAISLACFSGLVFAASKFILC 215
           VEIKWG LTW SRNF+ I L  FS +VFAASKFILC
Sbjct: 181 VEIKWGPLTWFSRNFITIFLLGFSAIVFAASKFILC 216

BLAST of Sed0019904 vs. NCBI nr
Match: XP_008449068.1 (PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo] >XP_008449069.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo])

HSP 1 Score: 349.7 bits (896), Expect = 1.7e-92
Identity = 173/216 (80.09%), Postives = 191/216 (88.43%), Query Frame = 0

Query: 1   MAETKDS-STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFG 60
           MA+TKDS + HIVEIP+EQ    Q L IS IQ HPLRQISESSGHLLLLKLWQRDEHLFG
Sbjct: 1   MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60

Query: 61  LRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWVPAVPVAATSGV 120
           LRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP  C+KWWVPAV + ATSGV
Sbjct: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV 120

Query: 121 FLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSV 180
           F++ VQLKLW++WKA  +LQRE+SE+RALTRC QELRMKGSCFNL KEP +GNRMKSSSV
Sbjct: 121 FVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSV 180

Query: 181 EIKWGLLTWLSRNFVAISLACFSGLVFAASKFILCG 216
           EIKWG LTW SRNF+AISL  FS +VFAASKFILCG
Sbjct: 181 EIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCG 216

BLAST of Sed0019904 vs. NCBI nr
Match: KAG7015562.1 (hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 348.6 bits (893), Expect = 3.9e-92
Identity = 174/216 (80.56%), Postives = 191/216 (88.43%), Query Frame = 0

Query: 3   ETKDS--STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGL 62
           ETKDS  + H+VEIP E    NQ + IS I+QHPLRQISESSGHLLLLKLWQR+EHLFGL
Sbjct: 4   ETKDSGAAAHVVEIPAE----NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63

Query: 63  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWVPAVPVAATSGVF 122
           RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN C KWWVP V + ATSGVF
Sbjct: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVF 123

Query: 123 LMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVE 182
           ++ VQLKLWL+WKA+ +LQRE+SE+RALTRCVQELRMKGSCFNL KEP +G+RMKSSSVE
Sbjct: 124 VIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVE 183

Query: 183 IKWGLLTWLSRNFVAISLACFSGLVFAASKFILCGV 217
           IKWG LTWLSRNFV I L CFSG+VF ASKFILCG+
Sbjct: 184 IKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL 215

BLAST of Sed0019904 vs. NCBI nr
Match: XP_022965180.1 (uncharacterized protein LOC111465114 [Cucurbita maxima])

HSP 1 Score: 347.4 bits (890), Expect = 8.7e-92
Identity = 175/216 (81.02%), Postives = 191/216 (88.43%), Query Frame = 0

Query: 3   ETKDS--STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGL 62
           ETKDS  +THIVEIP E    NQ + IS I+QHPLRQISESSGHLLLLKLWQR+EHLFGL
Sbjct: 4   ETKDSGAATHIVEIPAE----NQNIMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63

Query: 63  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWVPAVPVAATSGVF 122
           RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN C KWWVP V + ATSGVF
Sbjct: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVF 123

Query: 123 LMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVE 182
           ++ VQLKLWL+WKA+ +LQRE+SE+RALTR VQELRMKGSCFNL KEP +G+RMKSSSVE
Sbjct: 124 VIVVQLKLWLYWKASAQLQREKSENRALTRIVQELRMKGSCFNLSKEPQIGHRMKSSSVE 183

Query: 183 IKWGLLTWLSRNFVAISLACFSGLVFAASKFILCGV 217
           IKWG LTWLSRNFV I L CFSG+VF ASKFILCG+
Sbjct: 184 IKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL 215

BLAST of Sed0019904 vs. NCBI nr
Match: XP_023553388.1 (uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 346.7 bits (888), Expect = 1.5e-91
Identity = 171/215 (79.53%), Postives = 191/215 (88.84%), Query Frame = 0

Query: 3   ETKDS-STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLR 62
           ET+DS + H+VEIP E    NQ + IS I+QHPLRQISESSGHLLLLKLWQR+EHLFGLR
Sbjct: 4   ETRDSGAAHVVEIPAE----NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 63

Query: 63  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWVPAVPVAATSGVFL 122
           +GRRETK+ESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN C KWWVP V + ATSGVF+
Sbjct: 64  VGRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 123

Query: 123 MAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEI 182
           + VQLKLWL+WKA+ +LQRE+SE+RALTRCVQELRMKGSCFNL KEP +G+RMKSSSVEI
Sbjct: 124 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 183

Query: 183 KWGLLTWLSRNFVAISLACFSGLVFAASKFILCGV 217
           KWG LTWLSRNFV I L CFSG+VF ASKFILCG+
Sbjct: 184 KWGPLTWLSRNFVTIVLLCFSGIVFGASKFILCGL 214

BLAST of Sed0019904 vs. ExPASy TrEMBL
Match: A0A1S3BL81 (uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 8.4e-93
Identity = 173/216 (80.09%), Postives = 191/216 (88.43%), Query Frame = 0

Query: 1   MAETKDS-STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFG 60
           MA+TKDS + HIVEIP+EQ    Q L IS IQ HPLRQISESSGHLLLLKLWQRDEHLFG
Sbjct: 1   MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60

Query: 61  LRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWVPAVPVAATSGV 120
           LRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP  C+KWWVPAV + ATSGV
Sbjct: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV 120

Query: 121 FLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSV 180
           F++ VQLKLW++WKA  +LQRE+SE+RALTRC QELRMKGSCFNL KEP +GNRMKSSSV
Sbjct: 121 FVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSV 180

Query: 181 EIKWGLLTWLSRNFVAISLACFSGLVFAASKFILCG 216
           EIKWG LTW SRNF+AISL  FS +VFAASKFILCG
Sbjct: 181 EIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCG 216

BLAST of Sed0019904 vs. ExPASy TrEMBL
Match: A0A6J1HN07 (uncharacterized protein LOC111465114 OS=Cucurbita maxima OX=3661 GN=LOC111465114 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 4.2e-92
Identity = 175/216 (81.02%), Postives = 191/216 (88.43%), Query Frame = 0

Query: 3   ETKDS--STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGL 62
           ETKDS  +THIVEIP E    NQ + IS I+QHPLRQISESSGHLLLLKLWQR+EHLFGL
Sbjct: 4   ETKDSGAATHIVEIPAE----NQNIMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63

Query: 63  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWVPAVPVAATSGVF 122
           RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN C KWWVP V + ATSGVF
Sbjct: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVF 123

Query: 123 LMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVE 182
           ++ VQLKLWL+WKA+ +LQRE+SE+RALTR VQELRMKGSCFNL KEP +G+RMKSSSVE
Sbjct: 124 VIVVQLKLWLYWKASAQLQREKSENRALTRIVQELRMKGSCFNLSKEPQIGHRMKSSSVE 183

Query: 183 IKWGLLTWLSRNFVAISLACFSGLVFAASKFILCGV 217
           IKWG LTWLSRNFV I L CFSG+VF ASKFILCG+
Sbjct: 184 IKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL 215

BLAST of Sed0019904 vs. ExPASy TrEMBL
Match: A0A0A0L2U7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.1e-91
Identity = 169/216 (78.24%), Postives = 189/216 (87.50%), Query Frame = 0

Query: 1   MAETKDS-STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFG 60
           MAETKDS + HIVEIP+EQ    Q L IS IQ HPLRQISESSGHLLLLKLWQRDEHLFG
Sbjct: 1   MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60

Query: 61  LRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWVPAVPVAATSGV 120
           LRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP  C+KWWVPAV + ATSGV
Sbjct: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV 120

Query: 121 FLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSV 180
           F++ VQLKLW++WKA  +LQ+E++E+RALTRCVQELRMKGSCFNL KEP +GNRMKSSSV
Sbjct: 121 FVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV 180

Query: 181 EIKWGLLTWLSRNFVAISLACFSGLVFAASKFILCG 216
           EIKWG LTW SRNF+ ISL  FS ++F  SKFILCG
Sbjct: 181 EIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCG 216

BLAST of Sed0019904 vs. ExPASy TrEMBL
Match: A0A6J1EWB5 (uncharacterized protein LOC111438709 OS=Cucurbita moschata OX=3662 GN=LOC111438709 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 6.1e-91
Identity = 173/216 (80.09%), Postives = 190/216 (87.96%), Query Frame = 0

Query: 3   ETKDS--STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGL 62
           ETKDS  + H+VEIP E    NQ + IS I+QHPLRQISESSGHLLLLKLWQR+EHLFGL
Sbjct: 4   ETKDSGAAAHVVEIPAE----NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63

Query: 63  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWVPAVPVAATSGVF 122
           RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN C KWWVP V + ATSGVF
Sbjct: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVF 123

Query: 123 LMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVE 182
           ++ VQLKLWL+WKA+ +LQRE+SE+RALTRCVQELRMKGSCFNL KEP +G+RMKSSSVE
Sbjct: 124 VIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVE 183

Query: 183 IKWGLLTWLSRNFVAISLACFSGLVFAASKFILCGV 217
           IKWG LT LSRNFV I L CFSG+VF ASKFILCG+
Sbjct: 184 IKWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCGL 215

BLAST of Sed0019904 vs. ExPASy TrEMBL
Match: A0A5N6RKR8 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016951 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 1.0e-66
Identity = 134/227 (59.03%), Postives = 173/227 (76.21%), Query Frame = 0

Query: 1   MAETKDSSTHIVEIPLEQNEQNQML----TIS-AIQQHPLRQISESSGHLLLLKLWQRDE 60
           MAE KD+  HIVEIP+++ +Q+++L    TIS AIQ HPL +ISES GHLLLLKLWQR+E
Sbjct: 1   MAEMKDA--HIVEIPVDEEQQHKLLSAMNTISAAIQHHPLMEISESPGHLLLLKLWQREE 60

Query: 61  HLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSS-------DPNACRKWWV 120
            LFG RI  +ET+L+S+K+++FQLCC+FF+FH   LT+LF SS         + C+KWW+
Sbjct: 61  DLFGRRIALKETRLDSIKRELFQLCCFFFIFHGFFLTILFNSSVDSQEEDTSHTCKKWWI 120

Query: 121 PAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEP 180
           P +   +TS V +  VQ+KLW  WK  ++LQRER++SRA+TRC+QELRMKG+ F+L KEP
Sbjct: 121 PGLLSVSTSLVLVFLVQVKLWRFWKVWKQLQRERTDSRAVTRCIQELRMKGASFDLSKEP 180

Query: 181 HVGNRMKSSSVEIKWGLLTWLSRNFVAISLACFSGLVFAASKFILCG 216
           H G RMKSSSVEIKW  LTW S+  + I+L CF+GLVF ASKFILCG
Sbjct: 181 HGGKRMKSSSVEIKWKPLTWFSQYLITIALVCFAGLVFPASKFILCG 225

BLAST of Sed0019904 vs. TAIR 10
Match: AT5G56120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12870.1); Has 77 Blast hits to 75 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 226.9 bits (577), Expect = 1.6e-59
Identity = 123/237 (51.90%), Postives = 160/237 (67.51%), Query Frame = 0

Query: 1   MAETKDSSTHIVEIPL-----EQNEQNQMLTIS--------AIQQHPLRQISESSGHLLL 60
           MA TKDS  H+VEIP+     E+ +Q Q++ +S         IQQHPL +ISES GHLLL
Sbjct: 1   MAGTKDS--HVVEIPVDEEHKERQQQQQLVAVSNPGMGILKVIQQHPLSEISESPGHLLL 60

Query: 61  LKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN------ 120
           LKLWQR+E LF  R+  +E++LES+K++IFQLCC+F +FH    TL+++SS  +      
Sbjct: 61  LKLWQREEDLFCRRVLLKESRLESIKREIFQLCCFFLVFHGFFFTLVYSSSCSDDADVVK 120

Query: 121 ---ACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMK 180
               C+KWW+P+    ATS V +  VQ KL++ WK  R + RER+++R LTRCV ELRMK
Sbjct: 121 SNAVCKKWWIPSAVSLATSLVLVFLVQAKLFVFWKVYRGVNRERNDNRTLTRCVLELRMK 180

Query: 181 GSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLACFSGLVFAASKFILCG 216
           GS F+L KEP  G RMKSSSVEIKW  +TW S+  + I L C +GL F  SKFILCG
Sbjct: 181 GSSFDLSKEPMSGKRMKSSSVEIKWKPVTWFSQYLITIVLLCSAGLFFPVSKFILCG 235

BLAST of Sed0019904 vs. TAIR 10
Match: AT3G12870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 118.2 bits (295), Expect = 8.0e-27
Identity = 70/195 (35.90%), Postives = 117/195 (60.00%), Query Frame = 0

Query: 27  ISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLF 86
           + A  +HPL QI+++  H LLLK W ++E L   R+  +E++++S++++I QL  +FFLF
Sbjct: 12  MEAKTRHPLHQIADTPTHKLLLKQWLKEEELILSRVSHKESQIDSVRREITQLYIFFFLF 71

Query: 87  HALSLTLLF-------TSSDPNACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQ 146
           H++SL LLF       +S+  +AC++ W+P++    +S   + AV+ K  +     + L+
Sbjct: 72  HSISLLLLFHASSSSSSSASSSACKRSWIPSLCALLSSLGIIWAVRYKSEVESHLEKLLE 131

Query: 147 RERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLA 206
           RE+ +++ L +CV+EL+ KG  F+L KE     R KS  VE K  +  W +R+FV +   
Sbjct: 132 REKEDAKLLRKCVEELKKKGIEFDLLKEVDALRRAKSLRVESK-PVKKWSARDFVTLFFF 191

Query: 207 CFSGLVFAASKFILC 215
             S LV A  + ILC
Sbjct: 192 SVSCLVLAMIRLILC 205

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038905570.11.3e-9280.56uncharacterized protein LOC120091553 [Benincasa hispida] >XP_038905571.1 unchara... [more]
XP_008449068.11.7e-9280.09PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo] >XP_008449069.1 P... [more]
KAG7015562.13.9e-9280.56hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022965180.18.7e-9281.02uncharacterized protein LOC111465114 [Cucurbita maxima][more]
XP_023553388.11.5e-9179.53uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3BL818.4e-9380.09uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=... [more]
A0A6J1HN074.2e-9281.02uncharacterized protein LOC111465114 OS=Cucurbita maxima OX=3661 GN=LOC111465114... [more]
A0A0A0L2U72.1e-9178.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1[more]
A0A6J1EWB56.1e-9180.09uncharacterized protein LOC111438709 OS=Cucurbita moschata OX=3662 GN=LOC1114387... [more]
A0A5N6RKR81.0e-6659.03Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016951 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G56120.11.6e-5951.90unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G12870.18.0e-2735.90unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33287OS03G0453550 PROTEINcoord: 20..215
NoneNo IPR availablePANTHERPTHR33287:SF3OS03G0453550 PROTEINcoord: 20..215

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0019904.1Sed0019904.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane