Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCAATTGTTATATAATTAATTATTTAATAATTTATAAATAATTATATTTAGACATTCATTTAAAGTATTTAAAATGGGATATATTTGTTTAATAATTATTAAAAAAAAAATAGACATTTTTCGTAGTTGTCCTATTTTGTGAATTTCCCACGACTTTCGATTGGGCATATAAATAAAGAAAAAAATTTGCGGTGTGGAGTTGAGTTTCAAGTTTCAGCCATTTCAAACCAAAAATGGAGGCGATCACATACCAGAGGATGAAGCCCCGGCGGCGGTCCCACGGCACCGGCTTCCGCCTCAACTCGAGAAGATTCAGCGTCTCCAAGCTGCGGCCCAAGTTCGTGTGGCTCTTCACCATCTTAACCCGATGCCGCCGCTTCTATTCCCGGACCTTGAGCTCCATCAACAAGCGCCGGACATCCACTGCTTCTTCGAGATCCACCGCCGCCGATCGAGGCGAGTGCAGGCTCAGATCCTTCCGCCGCTCCAACTCTTTCTACGCCGAAGCCATTGCCGACTGCTTGGATTTCATCAAGAGATCATCATCATCCGCCTCTCTTTCTGCTGATCGCCCGCCCAGTCAACCCACCGTTCAATTTCTTCACCCTTCTTCTACCTAACATTTTGTTTATAAAAAAACATTGTTCATAAATATTTCTCTTTCCTATTATATTTGTTGTTGTTTTGTTTGTTTGTCTGTAAGATTCAAAATGGCA
mRNA sequence
GTCAATTGTTATATAATTAATTATTTAATAATTTATAAATAATTATATTTAGACATTCATTTAAAGTATTTAAAATGGGATATATTTGTTTAATAATTATTAAAAAAAAAATAGACATTTTTCGTAGTTGTCCTATTTTGTGAATTTCCCACGACTTTCGATTGGGCATATAAATAAAGAAAAAAATTTGCGGTGTGGAGTTGAGTTTCAAGTTTCAGCCATTTCAAACCAAAAATGGAGGCGATCACATACCAGAGGATGAAGCCCCGGCGGCGGTCCCACGGCACCGGCTTCCGCCTCAACTCGAGAAGATTCAGCGTCTCCAAGCTGCGGCCCAAGTTCGTGTGGCTCTTCACCATCTTAACCCGATGCCGCCGCTTCTATTCCCGGACCTTGAGCTCCATCAACAAGCGCCGGACATCCACTGCTTCTTCGAGATCCACCGCCGCCGATCGAGGCGAGTGCAGGCTCAGATCCTTCCGCCGCTCCAACTCTTTCTACGCCGAAGCCATTGCCGACTGCTTGGATTTCATCAAGAGATCATCATCATCCGCCTCTCTTTCTGCTGATCGCCCGCCCAGTCAACCCACCGTTCAATTTCTTCACCCTTCTTCTACCTAACATTTTGTTTATAAAAAAACATTGTTCATAAATATTTCTCTTTCCTATTATATTTGTTGTTGTTTTGTTTGTTTGTCTGTAAGATTCAAAATGGCA
Coding sequence (CDS)
ATGGAGGCGATCACATACCAGAGGATGAAGCCCCGGCGGCGGTCCCACGGCACCGGCTTCCGCCTCAACTCGAGAAGATTCAGCGTCTCCAAGCTGCGGCCCAAGTTCGTGTGGCTCTTCACCATCTTAACCCGATGCCGCCGCTTCTATTCCCGGACCTTGAGCTCCATCAACAAGCGCCGGACATCCACTGCTTCTTCGAGATCCACCGCCGCCGATCGAGGCGAGTGCAGGCTCAGATCCTTCCGCCGCTCCAACTCTTTCTACGCCGAAGCCATTGCCGACTGCTTGGATTTCATCAAGAGATCATCATCATCCGCCTCTCTTTCTGCTGATCGCCCGCCCAGTCAACCCACCGTTCAATTTCTTCACCCTTCTTCTACCTAA
Protein sequence
MEAITYQRMKPRRRSHGTGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSSINKRRTSTASSRSTAADRGECRLRSFRRSNSFYAEAIADCLDFIKRSSSSASLSADRPPSQPTVQFLHPSST
Homology
BLAST of Sed0019252 vs. NCBI nr
Match:
KAG6596289.1 (hypothetical protein SDJN03_09469, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 130.6 bits (327), Expect = 9.9e-27
Identity = 83/139 (59.71%), Postives = 96/139 (69.06%), Query Frame = 0
Query: 1 MEAITYQRMKPRRRSHG----TGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSS 60
ME ITYQR+ RRRSHG GF L+SRRFSVSKLR KF WL IL R RR YS ++
Sbjct: 76 MEPITYQRI--RRRSHGFARCRGFHLHSRRFSVSKLRAKFDWLLRILNRWRRSYSWSIKI 135
Query: 61 INKRRTSTASSRSTAA-------DRGECRLRSFRRSNSFYAEAIADCLDFIKRSSSSASL 120
RR + + +TA+ DRGECRLRSFRRSNSFYAEAIADCLDFIKRS S+
Sbjct: 136 NKARRGGRSKASATASAEFPRCVDRGECRLRSFRRSNSFYAEAIADCLDFIKRS----SV 195
Query: 121 SADRPPSQPTVQFLHPSST 129
S+DR SQP V+F PS++
Sbjct: 196 SSDRASSQPRVEFRDPSAS 208
BLAST of Sed0019252 vs. NCBI nr
Match:
KAG7027838.1 (hypothetical protein SDJN02_09015, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 130.6 bits (327), Expect = 9.9e-27
Identity = 83/139 (59.71%), Postives = 96/139 (69.06%), Query Frame = 0
Query: 1 MEAITYQRMKPRRRSHG----TGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSS 60
ME ITYQR+ RRRSHG GF L+SRRFSVSKLR KF WL IL R RR YS ++
Sbjct: 1 MEPITYQRI--RRRSHGFARCRGFHLHSRRFSVSKLRAKFDWLLRILNRWRRSYSWSIKI 60
Query: 61 INKRRTSTASSRSTAA-------DRGECRLRSFRRSNSFYAEAIADCLDFIKRSSSSASL 120
RR + + +TA+ DRGECRLRSFRRSNSFYAEAIADCLDFIKRS S+
Sbjct: 61 NKARRGGRSKASATASAEFPRCVDRGECRLRSFRRSNSFYAEAIADCLDFIKRS----SV 120
Query: 121 SADRPPSQPTVQFLHPSST 129
S+DR SQP V+F PS++
Sbjct: 121 SSDRASSQPRVEFRDPSAS 133
BLAST of Sed0019252 vs. NCBI nr
Match:
KAE8637405.1 (hypothetical protein CSA_023382 [Cucumis sativus] >KGN55589.1 hypothetical protein Csa_011775 [Cucumis sativus])
HSP 1 Score: 97.8 bits (242), Expect = 7.1e-17
Identity = 67/123 (54.47%), Postives = 80/123 (65.04%), Query Frame = 0
Query: 1 MEAITYQRMKPRRRSHGTGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSSINKR 60
M+ ITY+R+ R+R GFRL SRR SVSKLR KF WL IL R R R++ I K
Sbjct: 1 MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWR----RSIVEIKKS 60
Query: 61 RTSTASSRSTAADRGECRLRSFRRSNSFYAEAIADCLDFIKRSSSSASLSADRPPSQ-PT 120
TS+ S ++AA +LRSFRRSNSFYAEAIADCLDFIK +SS ++ PPS PT
Sbjct: 61 GTSSKGSSNSAAQ--AAKLRSFRRSNSFYAEAIADCLDFIKTTSSFST-----PPSTIPT 112
Query: 121 VQF 123
F
Sbjct: 121 HTF 112
BLAST of Sed0019252 vs. NCBI nr
Match:
KAA0052904.1 (hypothetical protein E6C27_scaffold344G00100 [Cucumis melo var. makuwa] >TYK11358.1 hypothetical protein E5676_scaffold139G00100 [Cucumis melo var. makuwa])
HSP 1 Score: 97.1 bits (240), Expect = 1.2e-16
Identity = 67/123 (54.47%), Postives = 79/123 (64.23%), Query Frame = 0
Query: 1 MEAITYQRMKPRRRSHGTGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSSINKR 60
M+ ITY+R++ R R GFRL SRR SVSKL+ KF WL IL ++ R++ I KR
Sbjct: 1 MDPITYERIRRRPRRSCRGFRLTSRRLSVSKLQSKFGWLLRIL----NWWRRSIVDIKKR 60
Query: 61 RTSTASSRSTAADRGECRLRSFRRSNSFYAEAIADCLDFIKRSSSSASLSADRPPSQ-PT 120
S+ S ++ A RLRSFRRSNSFYAEAIADCLDFIK SSSS S PPS PT
Sbjct: 61 GRSSKGSSNSGAQ--ATRLRSFRRSNSFYAEAIADCLDFIKTSSSSFS----TPPSTIPT 113
Query: 121 VQF 123
F
Sbjct: 121 HTF 113
BLAST of Sed0019252 vs. NCBI nr
Match:
XP_022158286.1 (uncharacterized protein LOC111024807 [Momordica charantia])
HSP 1 Score: 96.7 bits (239), Expect = 1.6e-16
Identity = 71/133 (53.38%), Postives = 83/133 (62.41%), Query Frame = 0
Query: 1 MEAITYQRM----KPRRRSHGTGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSS 60
ME I+Y+R+ RR GFRLNSRRFSVS+LR KF+ L IL + RR S
Sbjct: 78 MEPISYERIIGKGSRRRSQSARGFRLNSRRFSVSRLRAKFMCLLRILNKWRR-------S 137
Query: 61 INKRRTSTASSRSTAADRGEC--RLRSFRRSNSFYAEAIADCLDFIK-RSSSSASLSADR 120
I K R S A A+ C RLRSFRRSNSFYAEA+ADCLDFIK +SSS S++ D
Sbjct: 138 IKKMRRSKAE----VAEFPWCTDRLRSFRRSNSFYAEAMADCLDFIKTNTSSSLSVAVD- 195
Query: 121 PPSQPTVQFLHPS 127
QP V+F HPS
Sbjct: 198 ---QPMVEFRHPS 195
BLAST of Sed0019252 vs. ExPASy TrEMBL
Match:
A0A0A0L3I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000130 PE=4 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 3.4e-17
Identity = 67/123 (54.47%), Postives = 80/123 (65.04%), Query Frame = 0
Query: 1 MEAITYQRMKPRRRSHGTGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSSINKR 60
M+ ITY+R+ R+R GFRL SRR SVSKLR KF WL IL R R R++ I K
Sbjct: 1 MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWR----RSIVEIKKS 60
Query: 61 RTSTASSRSTAADRGECRLRSFRRSNSFYAEAIADCLDFIKRSSSSASLSADRPPSQ-PT 120
TS+ S ++AA +LRSFRRSNSFYAEAIADCLDFIK +SS ++ PPS PT
Sbjct: 61 GTSSKGSSNSAAQ--AAKLRSFRRSNSFYAEAIADCLDFIKTTSSFST-----PPSTIPT 112
Query: 121 VQF 123
F
Sbjct: 121 HTF 112
BLAST of Sed0019252 vs. ExPASy TrEMBL
Match:
A0A5A7UC85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00100 PE=4 SV=1)
HSP 1 Score: 97.1 bits (240), Expect = 5.8e-17
Identity = 67/123 (54.47%), Postives = 79/123 (64.23%), Query Frame = 0
Query: 1 MEAITYQRMKPRRRSHGTGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSSINKR 60
M+ ITY+R++ R R GFRL SRR SVSKL+ KF WL IL ++ R++ I KR
Sbjct: 1 MDPITYERIRRRPRRSCRGFRLTSRRLSVSKLQSKFGWLLRIL----NWWRRSIVDIKKR 60
Query: 61 RTSTASSRSTAADRGECRLRSFRRSNSFYAEAIADCLDFIKRSSSSASLSADRPPSQ-PT 120
S+ S ++ A RLRSFRRSNSFYAEAIADCLDFIK SSSS S PPS PT
Sbjct: 61 GRSSKGSSNSGAQ--ATRLRSFRRSNSFYAEAIADCLDFIKTSSSSFS----TPPSTIPT 113
Query: 121 VQF 123
F
Sbjct: 121 HTF 113
BLAST of Sed0019252 vs. ExPASy TrEMBL
Match:
A0A6J1E0I4 (uncharacterized protein LOC111024807 OS=Momordica charantia OX=3673 GN=LOC111024807 PE=4 SV=1)
HSP 1 Score: 96.7 bits (239), Expect = 7.6e-17
Identity = 71/133 (53.38%), Postives = 83/133 (62.41%), Query Frame = 0
Query: 1 MEAITYQRM----KPRRRSHGTGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSS 60
ME I+Y+R+ RR GFRLNSRRFSVS+LR KF+ L IL + RR S
Sbjct: 78 MEPISYERIIGKGSRRRSQSARGFRLNSRRFSVSRLRAKFMCLLRILNKWRR-------S 137
Query: 61 INKRRTSTASSRSTAADRGEC--RLRSFRRSNSFYAEAIADCLDFIK-RSSSSASLSADR 120
I K R S A A+ C RLRSFRRSNSFYAEA+ADCLDFIK +SSS S++ D
Sbjct: 138 IKKMRRSKAE----VAEFPWCTDRLRSFRRSNSFYAEAMADCLDFIKTNTSSSLSVAVD- 195
Query: 121 PPSQPTVQFLHPS 127
QP V+F HPS
Sbjct: 198 ---QPMVEFRHPS 195
BLAST of Sed0019252 vs. ExPASy TrEMBL
Match:
A0A2N9J454 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60148 PE=4 SV=1)
HSP 1 Score: 87.0 bits (214), Expect = 6.1e-14
Identity = 56/111 (50.45%), Postives = 70/111 (63.06%), Query Frame = 0
Query: 13 RRSHG-TGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSSINK------RRTSTA 72
RR +G GFRLN RRFSV +LR +F+ LF +L CR Y + L S+ K RR++
Sbjct: 14 RRCNGIRGFRLNPRRFSVQRLRARFISLFKLLDICRSSYGQALKSLKKGFGRRRRRSNIK 73
Query: 73 SSRSTAAD----------RGECRLRSFRRSNSFYAEAIADCLDFIKRSSSS 107
+ ST+ + +CRLRSF RSNSFYAEAIADCL+FIKRSS S
Sbjct: 74 RNNSTSTSTRSLVNKNMVQADCRLRSFGRSNSFYAEAIADCLEFIKRSSLS 124
BLAST of Sed0019252 vs. ExPASy TrEMBL
Match:
B9SRA4 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0612990 PE=4 SV=1)
HSP 1 Score: 84.7 bits (208), Expect = 3.0e-13
Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = 0
Query: 13 RRSH---GTGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSSINKR-------RT 72
RR H G GFRLN +RFSV +LR +FV+LF +L+R + Y + S+ + +
Sbjct: 14 RRYHGYGGRGFRLNCKRFSVQRLRARFVYLFKLLSRWKSSYGHAVQSLKRSMSRSSGIKR 73
Query: 73 STASSRSTAAD-RGECRLRSFRRSNSFYAEAIADCLDFIKRSSSS 107
+T+S RS + +CR+R+F RSNSFY+EAIADCL+FIKRSS S
Sbjct: 74 NTSSRRSLVVEVSSDCRMRTFGRSNSFYSEAIADCLEFIKRSSIS 118
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6596289.1 | 9.9e-27 | 59.71 | hypothetical protein SDJN03_09469, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7027838.1 | 9.9e-27 | 59.71 | hypothetical protein SDJN02_09015, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAE8637405.1 | 7.1e-17 | 54.47 | hypothetical protein CSA_023382 [Cucumis sativus] >KGN55589.1 hypothetical prote... | [more] |
KAA0052904.1 | 1.2e-16 | 54.47 | hypothetical protein E6C27_scaffold344G00100 [Cucumis melo var. makuwa] >TYK1135... | [more] |
XP_022158286.1 | 1.6e-16 | 53.38 | uncharacterized protein LOC111024807 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L3I7 | 3.4e-17 | 54.47 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000130 PE=4 SV=1 | [more] |
A0A5A7UC85 | 5.8e-17 | 54.47 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A6J1E0I4 | 7.6e-17 | 53.38 | uncharacterized protein LOC111024807 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
A0A2N9J454 | 6.1e-14 | 50.45 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60148 PE=4 SV=1 | [more] |
B9SRA4 | 3.0e-13 | 48.57 | Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0612990 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |