Sed0019252 (gene) Chayote v1

Overview
NameSed0019252
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG04: 14484883 .. 14485599 (-)
RNA-Seq ExpressionSed0019252
SyntenySed0019252
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCAATTGTTATATAATTAATTATTTAATAATTTATAAATAATTATATTTAGACATTCATTTAAAGTATTTAAAATGGGATATATTTGTTTAATAATTATTAAAAAAAAAATAGACATTTTTCGTAGTTGTCCTATTTTGTGAATTTCCCACGACTTTCGATTGGGCATATAAATAAAGAAAAAAATTTGCGGTGTGGAGTTGAGTTTCAAGTTTCAGCCATTTCAAACCAAAAATGGAGGCGATCACATACCAGAGGATGAAGCCCCGGCGGCGGTCCCACGGCACCGGCTTCCGCCTCAACTCGAGAAGATTCAGCGTCTCCAAGCTGCGGCCCAAGTTCGTGTGGCTCTTCACCATCTTAACCCGATGCCGCCGCTTCTATTCCCGGACCTTGAGCTCCATCAACAAGCGCCGGACATCCACTGCTTCTTCGAGATCCACCGCCGCCGATCGAGGCGAGTGCAGGCTCAGATCCTTCCGCCGCTCCAACTCTTTCTACGCCGAAGCCATTGCCGACTGCTTGGATTTCATCAAGAGATCATCATCATCCGCCTCTCTTTCTGCTGATCGCCCGCCCAGTCAACCCACCGTTCAATTTCTTCACCCTTCTTCTACCTAACATTTTGTTTATAAAAAAACATTGTTCATAAATATTTCTCTTTCCTATTATATTTGTTGTTGTTTTGTTTGTTTGTCTGTAAGATTCAAAATGGCA

mRNA sequence

GTCAATTGTTATATAATTAATTATTTAATAATTTATAAATAATTATATTTAGACATTCATTTAAAGTATTTAAAATGGGATATATTTGTTTAATAATTATTAAAAAAAAAATAGACATTTTTCGTAGTTGTCCTATTTTGTGAATTTCCCACGACTTTCGATTGGGCATATAAATAAAGAAAAAAATTTGCGGTGTGGAGTTGAGTTTCAAGTTTCAGCCATTTCAAACCAAAAATGGAGGCGATCACATACCAGAGGATGAAGCCCCGGCGGCGGTCCCACGGCACCGGCTTCCGCCTCAACTCGAGAAGATTCAGCGTCTCCAAGCTGCGGCCCAAGTTCGTGTGGCTCTTCACCATCTTAACCCGATGCCGCCGCTTCTATTCCCGGACCTTGAGCTCCATCAACAAGCGCCGGACATCCACTGCTTCTTCGAGATCCACCGCCGCCGATCGAGGCGAGTGCAGGCTCAGATCCTTCCGCCGCTCCAACTCTTTCTACGCCGAAGCCATTGCCGACTGCTTGGATTTCATCAAGAGATCATCATCATCCGCCTCTCTTTCTGCTGATCGCCCGCCCAGTCAACCCACCGTTCAATTTCTTCACCCTTCTTCTACCTAACATTTTGTTTATAAAAAAACATTGTTCATAAATATTTCTCTTTCCTATTATATTTGTTGTTGTTTTGTTTGTTTGTCTGTAAGATTCAAAATGGCA

Coding sequence (CDS)

ATGGAGGCGATCACATACCAGAGGATGAAGCCCCGGCGGCGGTCCCACGGCACCGGCTTCCGCCTCAACTCGAGAAGATTCAGCGTCTCCAAGCTGCGGCCCAAGTTCGTGTGGCTCTTCACCATCTTAACCCGATGCCGCCGCTTCTATTCCCGGACCTTGAGCTCCATCAACAAGCGCCGGACATCCACTGCTTCTTCGAGATCCACCGCCGCCGATCGAGGCGAGTGCAGGCTCAGATCCTTCCGCCGCTCCAACTCTTTCTACGCCGAAGCCATTGCCGACTGCTTGGATTTCATCAAGAGATCATCATCATCCGCCTCTCTTTCTGCTGATCGCCCGCCCAGTCAACCCACCGTTCAATTTCTTCACCCTTCTTCTACCTAA

Protein sequence

MEAITYQRMKPRRRSHGTGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSSINKRRTSTASSRSTAADRGECRLRSFRRSNSFYAEAIADCLDFIKRSSSSASLSADRPPSQPTVQFLHPSST
Homology
BLAST of Sed0019252 vs. NCBI nr
Match: KAG6596289.1 (hypothetical protein SDJN03_09469, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.6 bits (327), Expect = 9.9e-27
Identity = 83/139 (59.71%), Postives = 96/139 (69.06%), Query Frame = 0

Query: 1   MEAITYQRMKPRRRSHG----TGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSS 60
           ME ITYQR+  RRRSHG     GF L+SRRFSVSKLR KF WL  IL R RR YS ++  
Sbjct: 76  MEPITYQRI--RRRSHGFARCRGFHLHSRRFSVSKLRAKFDWLLRILNRWRRSYSWSIKI 135

Query: 61  INKRRTSTASSRSTAA-------DRGECRLRSFRRSNSFYAEAIADCLDFIKRSSSSASL 120
              RR   + + +TA+       DRGECRLRSFRRSNSFYAEAIADCLDFIKRS    S+
Sbjct: 136 NKARRGGRSKASATASAEFPRCVDRGECRLRSFRRSNSFYAEAIADCLDFIKRS----SV 195

Query: 121 SADRPPSQPTVQFLHPSST 129
           S+DR  SQP V+F  PS++
Sbjct: 196 SSDRASSQPRVEFRDPSAS 208

BLAST of Sed0019252 vs. NCBI nr
Match: KAG7027838.1 (hypothetical protein SDJN02_09015, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.6 bits (327), Expect = 9.9e-27
Identity = 83/139 (59.71%), Postives = 96/139 (69.06%), Query Frame = 0

Query: 1   MEAITYQRMKPRRRSHG----TGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSS 60
           ME ITYQR+  RRRSHG     GF L+SRRFSVSKLR KF WL  IL R RR YS ++  
Sbjct: 1   MEPITYQRI--RRRSHGFARCRGFHLHSRRFSVSKLRAKFDWLLRILNRWRRSYSWSIKI 60

Query: 61  INKRRTSTASSRSTAA-------DRGECRLRSFRRSNSFYAEAIADCLDFIKRSSSSASL 120
              RR   + + +TA+       DRGECRLRSFRRSNSFYAEAIADCLDFIKRS    S+
Sbjct: 61  NKARRGGRSKASATASAEFPRCVDRGECRLRSFRRSNSFYAEAIADCLDFIKRS----SV 120

Query: 121 SADRPPSQPTVQFLHPSST 129
           S+DR  SQP V+F  PS++
Sbjct: 121 SSDRASSQPRVEFRDPSAS 133

BLAST of Sed0019252 vs. NCBI nr
Match: KAE8637405.1 (hypothetical protein CSA_023382 [Cucumis sativus] >KGN55589.1 hypothetical protein Csa_011775 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 7.1e-17
Identity = 67/123 (54.47%), Postives = 80/123 (65.04%), Query Frame = 0

Query: 1   MEAITYQRMKPRRRSHGTGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSSINKR 60
           M+ ITY+R+  R+R    GFRL SRR SVSKLR KF WL  IL R R    R++  I K 
Sbjct: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWR----RSIVEIKKS 60

Query: 61  RTSTASSRSTAADRGECRLRSFRRSNSFYAEAIADCLDFIKRSSSSASLSADRPPSQ-PT 120
            TS+  S ++AA     +LRSFRRSNSFYAEAIADCLDFIK +SS ++     PPS  PT
Sbjct: 61  GTSSKGSSNSAAQ--AAKLRSFRRSNSFYAEAIADCLDFIKTTSSFST-----PPSTIPT 112

Query: 121 VQF 123
             F
Sbjct: 121 HTF 112

BLAST of Sed0019252 vs. NCBI nr
Match: KAA0052904.1 (hypothetical protein E6C27_scaffold344G00100 [Cucumis melo var. makuwa] >TYK11358.1 hypothetical protein E5676_scaffold139G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-16
Identity = 67/123 (54.47%), Postives = 79/123 (64.23%), Query Frame = 0

Query: 1   MEAITYQRMKPRRRSHGTGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSSINKR 60
           M+ ITY+R++ R R    GFRL SRR SVSKL+ KF WL  IL     ++ R++  I KR
Sbjct: 1   MDPITYERIRRRPRRSCRGFRLTSRRLSVSKLQSKFGWLLRIL----NWWRRSIVDIKKR 60

Query: 61  RTSTASSRSTAADRGECRLRSFRRSNSFYAEAIADCLDFIKRSSSSASLSADRPPSQ-PT 120
             S+  S ++ A     RLRSFRRSNSFYAEAIADCLDFIK SSSS S     PPS  PT
Sbjct: 61  GRSSKGSSNSGAQ--ATRLRSFRRSNSFYAEAIADCLDFIKTSSSSFS----TPPSTIPT 113

Query: 121 VQF 123
             F
Sbjct: 121 HTF 113

BLAST of Sed0019252 vs. NCBI nr
Match: XP_022158286.1 (uncharacterized protein LOC111024807 [Momordica charantia])

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-16
Identity = 71/133 (53.38%), Postives = 83/133 (62.41%), Query Frame = 0

Query: 1   MEAITYQRM----KPRRRSHGTGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSS 60
           ME I+Y+R+      RR     GFRLNSRRFSVS+LR KF+ L  IL + RR       S
Sbjct: 78  MEPISYERIIGKGSRRRSQSARGFRLNSRRFSVSRLRAKFMCLLRILNKWRR-------S 137

Query: 61  INKRRTSTASSRSTAADRGEC--RLRSFRRSNSFYAEAIADCLDFIK-RSSSSASLSADR 120
           I K R S A      A+   C  RLRSFRRSNSFYAEA+ADCLDFIK  +SSS S++ D 
Sbjct: 138 IKKMRRSKAE----VAEFPWCTDRLRSFRRSNSFYAEAMADCLDFIKTNTSSSLSVAVD- 195

Query: 121 PPSQPTVQFLHPS 127
              QP V+F HPS
Sbjct: 198 ---QPMVEFRHPS 195

BLAST of Sed0019252 vs. ExPASy TrEMBL
Match: A0A0A0L3I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000130 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.4e-17
Identity = 67/123 (54.47%), Postives = 80/123 (65.04%), Query Frame = 0

Query: 1   MEAITYQRMKPRRRSHGTGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSSINKR 60
           M+ ITY+R+  R+R    GFRL SRR SVSKLR KF WL  IL R R    R++  I K 
Sbjct: 1   MDPITYERITRRQRRSCRGFRLTSRRLSVSKLRSKFGWLLRILNRWR----RSIVEIKKS 60

Query: 61  RTSTASSRSTAADRGECRLRSFRRSNSFYAEAIADCLDFIKRSSSSASLSADRPPSQ-PT 120
            TS+  S ++AA     +LRSFRRSNSFYAEAIADCLDFIK +SS ++     PPS  PT
Sbjct: 61  GTSSKGSSNSAAQ--AAKLRSFRRSNSFYAEAIADCLDFIKTTSSFST-----PPSTIPT 112

Query: 121 VQF 123
             F
Sbjct: 121 HTF 112

BLAST of Sed0019252 vs. ExPASy TrEMBL
Match: A0A5A7UC85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00100 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.8e-17
Identity = 67/123 (54.47%), Postives = 79/123 (64.23%), Query Frame = 0

Query: 1   MEAITYQRMKPRRRSHGTGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSSINKR 60
           M+ ITY+R++ R R    GFRL SRR SVSKL+ KF WL  IL     ++ R++  I KR
Sbjct: 1   MDPITYERIRRRPRRSCRGFRLTSRRLSVSKLQSKFGWLLRIL----NWWRRSIVDIKKR 60

Query: 61  RTSTASSRSTAADRGECRLRSFRRSNSFYAEAIADCLDFIKRSSSSASLSADRPPSQ-PT 120
             S+  S ++ A     RLRSFRRSNSFYAEAIADCLDFIK SSSS S     PPS  PT
Sbjct: 61  GRSSKGSSNSGAQ--ATRLRSFRRSNSFYAEAIADCLDFIKTSSSSFS----TPPSTIPT 113

Query: 121 VQF 123
             F
Sbjct: 121 HTF 113

BLAST of Sed0019252 vs. ExPASy TrEMBL
Match: A0A6J1E0I4 (uncharacterized protein LOC111024807 OS=Momordica charantia OX=3673 GN=LOC111024807 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.6e-17
Identity = 71/133 (53.38%), Postives = 83/133 (62.41%), Query Frame = 0

Query: 1   MEAITYQRM----KPRRRSHGTGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSS 60
           ME I+Y+R+      RR     GFRLNSRRFSVS+LR KF+ L  IL + RR       S
Sbjct: 78  MEPISYERIIGKGSRRRSQSARGFRLNSRRFSVSRLRAKFMCLLRILNKWRR-------S 137

Query: 61  INKRRTSTASSRSTAADRGEC--RLRSFRRSNSFYAEAIADCLDFIK-RSSSSASLSADR 120
           I K R S A      A+   C  RLRSFRRSNSFYAEA+ADCLDFIK  +SSS S++ D 
Sbjct: 138 IKKMRRSKAE----VAEFPWCTDRLRSFRRSNSFYAEAMADCLDFIKTNTSSSLSVAVD- 195

Query: 121 PPSQPTVQFLHPS 127
              QP V+F HPS
Sbjct: 198 ---QPMVEFRHPS 195

BLAST of Sed0019252 vs. ExPASy TrEMBL
Match: A0A2N9J454 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60148 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 6.1e-14
Identity = 56/111 (50.45%), Postives = 70/111 (63.06%), Query Frame = 0

Query: 13  RRSHG-TGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSSINK------RRTSTA 72
           RR +G  GFRLN RRFSV +LR +F+ LF +L  CR  Y + L S+ K      RR++  
Sbjct: 14  RRCNGIRGFRLNPRRFSVQRLRARFISLFKLLDICRSSYGQALKSLKKGFGRRRRRSNIK 73

Query: 73  SSRSTAAD----------RGECRLRSFRRSNSFYAEAIADCLDFIKRSSSS 107
            + ST+            + +CRLRSF RSNSFYAEAIADCL+FIKRSS S
Sbjct: 74  RNNSTSTSTRSLVNKNMVQADCRLRSFGRSNSFYAEAIADCLEFIKRSSLS 124

BLAST of Sed0019252 vs. ExPASy TrEMBL
Match: B9SRA4 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0612990 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.0e-13
Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = 0

Query: 13  RRSH---GTGFRLNSRRFSVSKLRPKFVWLFTILTRCRRFYSRTLSSINKR-------RT 72
           RR H   G GFRLN +RFSV +LR +FV+LF +L+R +  Y   + S+ +        + 
Sbjct: 14  RRYHGYGGRGFRLNCKRFSVQRLRARFVYLFKLLSRWKSSYGHAVQSLKRSMSRSSGIKR 73

Query: 73  STASSRSTAAD-RGECRLRSFRRSNSFYAEAIADCLDFIKRSSSS 107
           +T+S RS   +   +CR+R+F RSNSFY+EAIADCL+FIKRSS S
Sbjct: 74  NTSSRRSLVVEVSSDCRMRTFGRSNSFYSEAIADCLEFIKRSSIS 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6596289.19.9e-2759.71hypothetical protein SDJN03_09469, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7027838.19.9e-2759.71hypothetical protein SDJN02_09015, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAE8637405.17.1e-1754.47hypothetical protein CSA_023382 [Cucumis sativus] >KGN55589.1 hypothetical prote... [more]
KAA0052904.11.2e-1654.47hypothetical protein E6C27_scaffold344G00100 [Cucumis melo var. makuwa] >TYK1135... [more]
XP_022158286.11.6e-1653.38uncharacterized protein LOC111024807 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L3I73.4e-1754.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000130 PE=4 SV=1[more]
A0A5A7UC855.8e-1754.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1E0I47.6e-1753.38uncharacterized protein LOC111024807 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A2N9J4546.1e-1450.45Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60148 PE=4 SV=1[more]
B9SRA43.0e-1348.57Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0612990 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..128
NoneNo IPR availablePANTHERPTHR34996:SF3OS06G0327400 PROTEINcoord: 2..111
NoneNo IPR availablePANTHERPTHR34996OS06G0327400 PROTEINcoord: 2..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0019252.1Sed0019252.1mRNA