Sed0019135 (gene) Chayote v1

Overview
NameSed0019135
Typegene
OrganismSechium edule (Chayote v1)
DescriptionE3 ubiquitin-protein ligase RNF181-like
LocationLG06: 40354367 .. 40355002 (-)
RNA-Seq ExpressionSed0019135
SyntenySed0019135
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTGTTTGCACTCTGGTTGTTCAAGTGCCGAATCGACAACGGCAGCAGCAGCGCAGTTTCGGGCGAGCAACCGAACGAAACGGTGGAACTCCGACTGCGACGGTTCAGCCGTAAGCAAACCCCGGAAGAAACTACACTGGCAGACCAGCCGATTCAAGTGGCCGCTAAAGACGTATTCCCTCTCCCTCTGCACGAGTTCAAAGCCGACCCCGCGAAATATGAGATCCACCTCGAGCAGTTGCTTTCCAGCAACCGCATCTCCGAGGCCGTGAGCAAGATGGTCATGGAGGAGATCTGGCTGTACGTGAGGGAGCGAGGCGGGGCAGGCAGAGACAGAGAGAGGAGTTTGCACGTCGTGACGGAAGTGAACGGCGTGATCGAGCTGAAGTGGACCGAGATGAGGAAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGATGATGATGAAGATGGGCCTCGAGAGAATGAGGAGCCGGAAATCTGCAGTATCTGTTTGGATGAACTGGATGGCTGGAAACGGGAGAAGATTCAGGTTCCGTGCGGGCATGTGTACCATGATTTGTGTATTTATCACTGGTCCATCGATAATGCTACATGCCCTTTGTGCCGAGCTTCTTTGGACGTCCAACACTGA

mRNA sequence

ATGGCTGTGTTTGCACTCTGGTTGTTCAAGTGCCGAATCGACAACGGCAGCAGCAGCGCAGTTTCGGGCGAGCAACCGAACGAAACGGTGGAACTCCGACTGCGACGGTTCAGCCGTAAGCAAACCCCGGAAGAAACTACACTGGCAGACCAGCCGATTCAAGTGGCCGCTAAAGACGTATTCCCTCTCCCTCTGCACGAGTTCAAAGCCGACCCCGCGAAATATGAGATCCACCTCGAGCAGTTGCTTTCCAGCAACCGCATCTCCGAGGCCGTGAGCAAGATGGTCATGGAGGAGATCTGGCTGTACGTGAGGGAGCGAGGCGGGGCAGGCAGAGACAGAGAGAGGAGTTTGCACGTCGTGACGGAAGTGAACGGCGTGATCGAGCTGAAGTGGACCGAGATGAGGAAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGATGATGATGAAGATGGGCCTCGAGAGAATGAGGAGCCGGAAATCTGCAGTATCTGTTTGGATGAACTGGATGGCTGGAAACGGGAGAAGATTCAGGTTCCGTGCGGGCATGTGTACCATGATTTGTGTATTTATCACTGGTCCATCGATAATGCTACATGCCCTTTGTGCCGAGCTTCTTTGGACGTCCAACACTGA

Coding sequence (CDS)

ATGGCTGTGTTTGCACTCTGGTTGTTCAAGTGCCGAATCGACAACGGCAGCAGCAGCGCAGTTTCGGGCGAGCAACCGAACGAAACGGTGGAACTCCGACTGCGACGGTTCAGCCGTAAGCAAACCCCGGAAGAAACTACACTGGCAGACCAGCCGATTCAAGTGGCCGCTAAAGACGTATTCCCTCTCCCTCTGCACGAGTTCAAAGCCGACCCCGCGAAATATGAGATCCACCTCGAGCAGTTGCTTTCCAGCAACCGCATCTCCGAGGCCGTGAGCAAGATGGTCATGGAGGAGATCTGGCTGTACGTGAGGGAGCGAGGCGGGGCAGGCAGAGACAGAGAGAGGAGTTTGCACGTCGTGACGGAAGTGAACGGCGTGATCGAGCTGAAGTGGACCGAGATGAGGAAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGATGATGATGAAGATGGGCCTCGAGAGAATGAGGAGCCGGAAATCTGCAGTATCTGTTTGGATGAACTGGATGGCTGGAAACGGGAGAAGATTCAGGTTCCGTGCGGGCATGTGTACCATGATTTGTGTATTTATCACTGGTCCATCGATAATGCTACATGCCCTTTGTGCCGAGCTTCTTTGGACGTCCAACACTGA

Protein sequence

MAVFALWLFKCRIDNGSSSAVSGEQPNETVELRLRRFSRKQTPEETTLADQPIQVAAKDVFPLPLHEFKADPAKYEIHLEQLLSSNRISEAVSKMVMEEIWLYVRERGGAGRDRERSLHVVTEVNGVIELKWTEMRKEEEEEEEEEDDDEDGPRENEEPEICSICLDELDGWKREKIQVPCGHVYHDLCIYHWSIDNATCPLCRASLDVQH
Homology
BLAST of Sed0019135 vs. NCBI nr
Match: KAG6595648.1 (hypothetical protein SDJN03_12201, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 8.4e-15
Identity = 75/219 (34.25%), Postives = 109/219 (49.77%), Query Frame = 0

Query: 16  GSSSAVSGEQPNETVELRLRRFSRKQTPEE----TTLADQPIQVAAKDVFPLPLHEFKAD 75
           G +SA SGEQP + ++L+LR F R+ +       T L +    +    +FPL L E   D
Sbjct: 15  GYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELH-D 74

Query: 76  PAKYEIHLEQLLSSNRISEAVSKMVMEEIWLYVRERGGAGRDRERSLHVVTEVNGVIELK 135
           P   ++++ QLLS   +   V +++ E I  Y      AG +RE S H V E++ +  + 
Sbjct: 75  PVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLL--VAGGNRETSFHTVLELDYIRVIT 134

Query: 136 WTEMR--------------KEEEEEEEEEDDDEDGPRENEEPEICSICLDEL-------- 195
           W E                +E    EE     E      EE   CSICL+EL        
Sbjct: 135 WMEENHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNG 194

Query: 196 DGWKREK-IQVPCGHVYHDLCIYHWSIDNATCPLCRASL 208
           +G KRE+ I++ CGHVYH+ CI++W   N++CPLCRA L
Sbjct: 195 EGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 230

BLAST of Sed0019135 vs. NCBI nr
Match: KAG6595650.1 (hypothetical protein SDJN03_12203, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-14
Identity = 75/219 (34.25%), Postives = 109/219 (49.77%), Query Frame = 0

Query: 16  GSSSAVSGEQPNETVELRLRRFSRKQTPEE----TTLADQPIQVAAKDVFPLPLHEFKAD 75
           G +SA SGEQP + ++L+LR F R+ +       T L +    +    +FPL L E   D
Sbjct: 15  GYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELH-D 74

Query: 76  PAKYEIHLEQLLSSNRISEAVSKMVMEEIWLYVRERGGAGRDRERSLHVVTEVNGVIELK 135
           P   ++++ QLLS   +   V +++ E I  Y      AG +RE S H V E++ +  + 
Sbjct: 75  PVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLL--VAGGNRETSFHTVLELDYIRLIT 134

Query: 136 WTEMR--------------KEEEEEEEEEDDDEDGPRENEEPEICSICLDEL-------- 195
           W E                +E    EE     E      EE   CSICL+EL        
Sbjct: 135 WMEENHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGKG 194

Query: 196 DGWKREK-IQVPCGHVYHDLCIYHWSIDNATCPLCRASL 208
           +G KRE+ I++ CGHVYH+ CI++W   N++CPLCRA L
Sbjct: 195 EGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 230

BLAST of Sed0019135 vs. NCBI nr
Match: XP_023518048.1 (uncharacterized protein LOC111781594 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 5.4e-14
Identity = 75/217 (34.56%), Postives = 106/217 (48.85%), Query Frame = 0

Query: 16  GSSSAVSGEQPNETVELRL----RRFSRKQTPEETTLADQPIQVAAKDVFPLPLHEFKAD 75
           G +SA SGEQP + ++L+L    R  S       T L +    +    +FPLPL E   D
Sbjct: 15  GYTSAASGEQPYQVLQLQLHYIRRDISVSPLSGVTYLQETAPILLRNLLFPLPLQELH-D 74

Query: 76  PAKYEIHLEQLLSSNRISEAVSKMVMEEIWLYVRERGGAGRDRERSLHVVTEVNGVIELK 135
           P   ++++ QLLS   +     + + E I  Y      AG +RE S H V +++ +  + 
Sbjct: 75  PVILQVYVAQLLSLLNVRSPACEAIAERIVSYTILM--AGGNRETSFHTVVDLDFIRLIT 134

Query: 136 WTEMR----------KEEEEE----EEEEDDDEDGPRENEEPEICSICLDEL------DG 195
           W E              E EE    EE     E      EE   CSICL+EL      +G
Sbjct: 135 WMEENHGLFQGWSNGSAEGEETVILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGEG 194

Query: 196 WKREK-IQVPCGHVYHDLCIYHWSIDNATCPLCRASL 208
            KRE+ I++ CGHVYH+ CI++W   N++CPLCRA L
Sbjct: 195 KKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 228

BLAST of Sed0019135 vs. NCBI nr
Match: XP_022151640.1 (E3 ubiquitin-protein ligase RNF181-like [Momordica charantia])

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-13
Identity = 68/210 (32.38%), Postives = 103/210 (49.05%), Query Frame = 0

Query: 15  NGSSSAV-SGEQPNETVELRLRRFSRKQTPEETTLADQPIQV-AAKDVFPLPLHEFKADP 74
           +G  S V SG+QP++ +++RLR  SR  +     +  +      A  VFPLPL       
Sbjct: 14  HGHRSVVSSGDQPHQVLQVRLRSQSRMISRSPAAILQETSWTPMANAVFPLPLSALNG-L 73

Query: 75  AKYEIHLEQLLSSNRISEAVSKMVMEEIWLYVRERGGAGRDRERSLHVVTEVN------- 134
              E ++ QLL S  + E   +++  +I  +V E  G   D + +LHVV  V+       
Sbjct: 74  LFLEAYIRQLLCSLDLPEGACEVIARKIASFVVELAGGNSD-QVNLHVVALVDYIEEMAI 133

Query: 135 -------GVIELKWTEMRKEEEEEEEEEDDDEDGPRENEEPEICSICLDELDGWKREKIQ 194
                  G  +   + ++KE+ EEE E  D             CS+CL+E++G   E I+
Sbjct: 134 VAEEAPAGAAKSAISRLKKEKVEEEVELGD-------------CSVCLNEMNGGS-EVIK 193

Query: 195 VPCGHVYHDLCIYHWSIDNATCPLCRASLD 209
           +PCGHVYH+ CI  W   N +CPLCR  L+
Sbjct: 194 MPCGHVYHESCILSWLNKNNSCPLCRTKLE 207

BLAST of Sed0019135 vs. NCBI nr
Match: XP_023539471.1 (uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.4 bits (202), Expect = 5.1e-12
Identity = 62/227 (27.31%), Postives = 104/227 (45.81%), Query Frame = 0

Query: 24  EQPNETVELRLRRFSRKQTPEETT-----LADQPIQVAAKDV-FPLPLHEFKADPAKYEI 83
           + P++ +++R+R  +R  T    +     +  + +     D  FPLPL E + DP   + 
Sbjct: 17  DDPDQLLQIRIRHSTRLLTGSPFSGYPFNIVHETLPTTMADAQFPLPLRELE-DPLFCQA 76

Query: 84  HLEQLLSSNRISEAVSKMVMEEIWLYVRERGGAGRDRERSLHVVTEVNGVIELKWTEMR- 143
           ++E+ LSS  +   +   +   I  +V +   A  + E + ++V E++  I++ W +   
Sbjct: 77  YIEEFLSSYNLGATIKNAIARRIASFVVQM--ACGNYEMTFYIVAEID-YIQMFWLDQSA 136

Query: 144 -KEEEEEEEEEDDDEDGPRENEEPEI---------------------------------- 203
              EEEEEEEED++E+   E EE E+                                  
Sbjct: 137 IAAEEEEEEEEDEEEEEDEEEEEEEVIFDNFSGRRGAPETAIERLKKEKFDGFGGEDLGN 196

Query: 204 CSICLDELDGWKREKIQVPCGHVYHDLCIYHWSIDNATCPLCRASLD 209
           CS+C DE+     E  ++PCGHVYH  C+  W   N +CPLCR  L+
Sbjct: 197 CSVCYDEMKDGGEEVSRIPCGHVYHKSCVLTWLQRNNSCPLCRKKLE 239

BLAST of Sed0019135 vs. ExPASy Swiss-Prot
Match: Q90ZT7 (E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis OX=8355 GN=rnf111-a PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.1e-05
Identity = 27/83 (32.53%), Postives = 44/83 (53.01%), Query Frame = 0

Query: 128 IELKWTEMRKEEEEEEEEEDDDEDGPRENEEPEICSICLDELDGWKREKIQVPCGHVYHD 187
           +   W   RK   +++ EE  +ED        E C+ICL  L+  +  + ++PC H++H 
Sbjct: 843 VSTDWFSQRKLHSKQDGEEAPEED------TEEKCTICLSILEEGEDVR-RLPCMHLFHQ 902

Query: 188 LCIYHWSIDNATCPLCRASLDVQ 211
           +C+  W I N  CP+CR  +D Q
Sbjct: 903 VCVDQWLITNKKCPICRVDIDTQ 918

BLAST of Sed0019135 vs. ExPASy Swiss-Prot
Match: Q6NRV8 (E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis OX=8355 GN=rnf111-b PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.1e-05
Identity = 27/83 (32.53%), Postives = 44/83 (53.01%), Query Frame = 0

Query: 128 IELKWTEMRKEEEEEEEEEDDDEDGPRENEEPEICSICLDELDGWKREKIQVPCGHVYHD 187
           +   W   RK   +++ EE  +ED        E C+ICL  L+  +  + ++PC H++H 
Sbjct: 879 VSTDWFSQRKLHSKQDGEEATEED------TEEKCTICLSILEEGEDVR-RLPCMHLFHQ 938

Query: 188 LCIYHWSIDNATCPLCRASLDVQ 211
           +C+  W I N  CP+CR  +D Q
Sbjct: 939 VCVDQWLITNKKCPICRVDIDTQ 954

BLAST of Sed0019135 vs. ExPASy Swiss-Prot
Match: Q66J97 (E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis OX=8355 GN=rnf111-c PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.1e-05
Identity = 27/83 (32.53%), Postives = 44/83 (53.01%), Query Frame = 0

Query: 128 IELKWTEMRKEEEEEEEEEDDDEDGPRENEEPEICSICLDELDGWKREKIQVPCGHVYHD 187
           +   W   RK   +++ EE  +ED        E C+ICL  L+  +  + ++PC H++H 
Sbjct: 887 VSTDWFSQRKLHSKQDGEEAPEED------TEEKCTICLSILEEGEDVR-RLPCMHLFHQ 946

Query: 188 LCIYHWSIDNATCPLCRASLDVQ 211
           +C+  W I N  CP+CR  +D Q
Sbjct: 947 VCVDQWLITNKKCPICRVDIDTQ 962

BLAST of Sed0019135 vs. ExPASy Swiss-Prot
Match: Q0V9R0 (E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis OX=8364 GN=rnf111 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.1e-05
Identity = 27/83 (32.53%), Postives = 44/83 (53.01%), Query Frame = 0

Query: 128 IELKWTEMRKEEEEEEEEEDDDEDGPRENEEPEICSICLDELDGWKREKIQVPCGHVYHD 187
           +   W   RK   +++ EE  +ED        E C+ICL  L+  +  + ++PC H++H 
Sbjct: 874 VSTDWFSQRKLHSKQDGEEATEED------TEEKCTICLSILEEGEDVR-RLPCMHLFHQ 933

Query: 188 LCIYHWSIDNATCPLCRASLDVQ 211
           +C+  W I N  CP+CR  +D Q
Sbjct: 934 VCVDQWLITNKKCPICRVDIDTQ 949

BLAST of Sed0019135 vs. ExPASy Swiss-Prot
Match: Q9SRM0 (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.8e-05
Identity = 26/74 (35.14%), Postives = 37/74 (50.00%), Query Frame = 0

Query: 136 RKEEEEEEEEEDDDEDGPRENEEPEICSICLDELDGWKREKIQVPCGHVYHDLCIYHWSI 195
           R+E  EEEEE++              C ICL   +  ++ K+  PC H YH  C+  W  
Sbjct: 95  RRERAEEEEEKE--------------CCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLK 154

Query: 196 DNATCPLCRASLDV 210
             ++CPLCR S+ V
Sbjct: 155 TESSCPLCRVSIRV 154

BLAST of Sed0019135 vs. ExPASy TrEMBL
Match: A0A6J1DBR5 (E3 ubiquitin-protein ligase RNF181-like OS=Momordica charantia OX=3673 GN=LOC111019547 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-13
Identity = 68/210 (32.38%), Postives = 103/210 (49.05%), Query Frame = 0

Query: 15  NGSSSAV-SGEQPNETVELRLRRFSRKQTPEETTLADQPIQV-AAKDVFPLPLHEFKADP 74
           +G  S V SG+QP++ +++RLR  SR  +     +  +      A  VFPLPL       
Sbjct: 14  HGHRSVVSSGDQPHQVLQVRLRSQSRMISRSPAAILQETSWTPMANAVFPLPLSALNG-L 73

Query: 75  AKYEIHLEQLLSSNRISEAVSKMVMEEIWLYVRERGGAGRDRERSLHVVTEVN------- 134
              E ++ QLL S  + E   +++  +I  +V E  G   D + +LHVV  V+       
Sbjct: 74  LFLEAYIRQLLCSLDLPEGACEVIARKIASFVVELAGGNSD-QVNLHVVALVDYIEEMAI 133

Query: 135 -------GVIELKWTEMRKEEEEEEEEEDDDEDGPRENEEPEICSICLDELDGWKREKIQ 194
                  G  +   + ++KE+ EEE E  D             CS+CL+E++G   E I+
Sbjct: 134 VAEEAPAGAAKSAISRLKKEKVEEEVELGD-------------CSVCLNEMNGGS-EVIK 193

Query: 195 VPCGHVYHDLCIYHWSIDNATCPLCRASLD 209
           +PCGHVYH+ CI  W   N +CPLCR  L+
Sbjct: 194 MPCGHVYHESCILSWLNKNNSCPLCRTKLE 207

BLAST of Sed0019135 vs. ExPASy TrEMBL
Match: A0A6J1G7Z5 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC111451666 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 7.1e-12
Identity = 66/216 (30.56%), Postives = 100/216 (46.30%), Query Frame = 0

Query: 9   FKCRIDNGSSSAV-SGEQPNETVELRLRRFSRKQTPEETTLADQ-PIQVAAKDVFPLPLH 68
           F+C I +  +  V S +QP + +ELRL   +   +     +  Q P       +FP  L 
Sbjct: 11  FQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVLR 70

Query: 69  EFKADPAKYEIHLEQLLSSNRISEAVSKMVMEEIWLYVRERGGAGRDRERSLHVVTEVNG 128
           + +  P     ++ Q LSS  I  A   ++ EEI  +  +      D   + H+V EV+ 
Sbjct: 71  DLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVD--LNFHIVVEVD- 130

Query: 129 VIELKWTEMRKEEEEE--------------EEEEDDDEDGPRENEEPEICSICLDELDGW 188
           VIE+ W ++     EE              E  +  + DG RE EE   CS+C + L G 
Sbjct: 131 VIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKG- 190

Query: 189 KREKIQVPCGHVYHDLCIYHWSIDNATCPLCRASLD 209
           + E  ++PCGHVYH  CI  W   + +CPLCR  L+
Sbjct: 191 EEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLE 222

BLAST of Sed0019135 vs. ExPASy TrEMBL
Match: A0A6J1KYV1 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499496 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-11
Identity = 66/216 (30.56%), Postives = 99/216 (45.83%), Query Frame = 0

Query: 9   FKCRIDNGSSSAV-SGEQPNETVELRLRRFSRKQTPEETTLADQ-PIQVAAKDVFPLPLH 68
           F+C I +  +  V SG+QP + +ELRL   +   +     +  Q P       +FP  L 
Sbjct: 11  FQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLR 70

Query: 69  EFKADPAKYEIHLEQLLSSNRISEAVSKMVMEEIWLYVRERGGAGRDRERSLHVVTEVNG 128
           + +  P     ++ Q LSS  I  A   ++ EEI  +  +      D   + H+V EV+ 
Sbjct: 71  DLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMD--LNFHIVVEVD- 130

Query: 129 VIELKWTEMRKEEEEE--------------EEEEDDDEDGPRENEEPEICSICLDELDGW 188
           V E+ W ++     EE              E  +    DG RE EE   CS+C + L G 
Sbjct: 131 VNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKG- 190

Query: 189 KREKIQVPCGHVYHDLCIYHWSIDNATCPLCRASLD 209
           + E  ++PCGHVYH  CI  W   + +CPLCR  L+
Sbjct: 191 EEEVSRIPCGHVYHKFCILKWLQMSNSCPLCRTKLE 222

BLAST of Sed0019135 vs. ExPASy TrEMBL
Match: A0A6J1J8T7 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111483640 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-11
Identity = 62/203 (30.54%), Postives = 102/203 (50.25%), Query Frame = 0

Query: 24  EQPNETVELRLRRFSRKQTPE--ETTLADQPIQVAAKDVFPLPLHEFKADPAKYEIHLEQ 83
           EQ   T+E+++R + R  + +  +  L   PI +    +FPLP +    DP   +I++ +
Sbjct: 20  EQSPPTLEVQMRSYIRLISGDLNQIVLETAPIPL-RNSLFPLPPNARNIDPVFLQIYIAE 79

Query: 84  LLSSNRISEAVSKMVMEEIWLYVRERGGAGRDRERSLHVVTEVNGVIELKWTEMR----- 143
           +L S  I    S+++  +I  +  +   A    + ++HVV  V+ V+E ++  ++     
Sbjct: 80  ILLSLNIGAVASEVIAAQIASFTLQL--AEEHNDTNVHVVAVVDNVVESRFWRLQAVPVM 139

Query: 144 -----KEEEEEEEEEDDDEDG------PRENEEPEI----CSICLDELDGWKREKIQVPC 203
                 EE  E  EE    +G        E EE E+    CSICLDE+     E I+ PC
Sbjct: 140 QGGRAAEERREVVEEVAAANGRYRMEKVEEKEEEEVDLGNCSICLDEMKCEGSEVIRTPC 199

Query: 204 GHVYHDLCIYHWSIDNATCPLCR 205
           GHVYH+ CI+ W  ++ +CPLCR
Sbjct: 200 GHVYHESCIFRWLDNSDSCPLCR 219

BLAST of Sed0019135 vs. ExPASy TrEMBL
Match: A0A5A7TLM1 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001430 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.9e-11
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 154 RENEEPEICSICLDELDGWKREKIQVPCGHVYHDLCIYHWSIDNATCPLCRASLDVQH 212
           +  EE   CS+CLDELD  KRE I++PCGHVYH+ CI+ W  +N +CPLCR S  + +
Sbjct: 162 KSEEEEGDCSVCLDELDCGKREVIRIPCGHVYHESCIFEWLNNNNSCPLCRTSFPLDN 219

BLAST of Sed0019135 vs. TAIR 10
Match: AT1G35330.1 (RING/U-box superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 8.1e-08
Identity = 20/46 (43.48%), Postives = 29/46 (63.04%), Query Frame = 0

Query: 162 CSICLDELDGWKREKIQVPCGHVYHDLCIYHWSIDNATCPLCRASL 208
           C+ICL+E +  +  ++  PC H +H  CI  W    +TCP+CRASL
Sbjct: 128 CAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASL 173

BLAST of Sed0019135 vs. TAIR 10
Match: AT2G35000.1 (RING/U-box superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 4.0e-07
Identity = 19/46 (41.30%), Postives = 30/46 (65.22%), Query Frame = 0

Query: 162 CSICLDELDGWKREKIQVPCGHVYHDLCIYHWSIDNATCPLCRASL 208
           C++CL E +  +  ++  PC HV+H  C+  W  +++TCPLCRA L
Sbjct: 135 CAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADL 180

BLAST of Sed0019135 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 4.0e-07
Identity = 20/50 (40.00%), Postives = 29/50 (58.00%), Query Frame = 0

Query: 162 CSICLDELDGWKREKIQVPCGHVYHDLCIYHWSIDNATCPLCRASLDVQH 212
           C+ICL E    +R ++  PC H +H  CI  W + +++CP CR SL   H
Sbjct: 105 CAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIEVH 154

BLAST of Sed0019135 vs. TAIR 10
Match: AT4G00305.1 (RING/U-box superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06
Identity = 26/59 (44.07%), Postives = 28/59 (47.46%), Query Frame = 0

Query: 150 EDGPRENEEPEICSICLDELDGWKREKIQVPCGHVYHDLCIYHW-SIDNATCPLCRASL 208
           ED       PE C IC DE DG    +    C HVYH  CI  W   D  TCPLCR  +
Sbjct: 59  EDISSRVNPPESCRICQDEFDGGDEVRCLRNCVHVYHKTCIDRWIQDDKMTCPLCRTPI 117

BLAST of Sed0019135 vs. TAIR 10
Match: AT1G51930.1 (RING/U-box superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.6e-06
Identity = 25/63 (39.68%), Postives = 34/63 (53.97%), Query Frame = 0

Query: 149 DEDGPRENE--EPEICSICLDELDGWKREKIQVPCGHVYHDLCIYHWSIDNATCPLCRAS 208
           +E+G RE E      C ICL+E +   + +    CGHV+H LCI  W      CP CR S
Sbjct: 65  EEEGGREEEGGGKRFCPICLEEYEDDHQIRRLRNCGHVFHLLCIDSWLTQKQNCPSCRRS 124

Query: 209 LDV 210
           +D+
Sbjct: 125 VDL 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6595648.18.4e-1534.25hypothetical protein SDJN03_12201, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595650.11.1e-1434.25hypothetical protein SDJN03_12203, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023518048.15.4e-1434.56uncharacterized protein LOC111781594 [Cucurbita pepo subsp. pepo][more]
XP_022151640.12.1e-1332.38E3 ubiquitin-protein ligase RNF181-like [Momordica charantia][more]
XP_023539471.15.1e-1227.31uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Q90ZT72.1e-0532.53E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis OX=8355 GN=rn... [more]
Q6NRV82.1e-0532.53E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis OX=8355 GN=rnf111-b PE=2... [more]
Q66J972.1e-0532.53E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis OX=8355 GN=rnf111-c PE=2... [more]
Q0V9R02.1e-0532.53E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis OX=8364 GN=rnf111 PE=2... [more]
Q9SRM04.8e-0535.14RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1DBR51.0e-1332.38E3 ubiquitin-protein ligase RNF181-like OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A6J1G7Z57.1e-1230.56E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1KYV11.2e-1130.56E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499... [more]
A0A6J1J8T72.7e-1130.54RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111483640 PE... [more]
A0A5A7TLM17.9e-1153.45E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1... [more]
Match NameE-valueIdentityDescription
AT1G35330.18.1e-0843.48RING/U-box superfamily protein [more]
AT2G35000.14.0e-0741.30RING/U-box superfamily protein [more]
AT5G01880.14.0e-0740.00RING/U-box superfamily protein [more]
AT4G00305.11.2e-0644.07RING/U-box superfamily protein [more]
AT1G51930.12.6e-0639.68RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 162..203
e-value: 2.7E-7
score: 40.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 161..204
e-value: 5.1E-10
score: 39.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 162..204
score: 12.533537
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 122..209
e-value: 3.9E-15
score: 57.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..158
NoneNo IPR availablePANTHERPTHR22765RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAININGcoord: 78..205
NoneNo IPR availablePANTHERPTHR22765:SF329SUBFAMILY NOT NAMEDcoord: 78..205
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 161..210

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0019135.1Sed0019135.1mRNA