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Sed0019135 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSexonpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGTGTTTGCACTCTGGTTGTTCAAGTGCCGAATCGACAACGGCAGCAGCAGCGCAGTTTCGGGCGAGCAACCGAACGAAACGGTGGAACTCCGACTGCGACGGTTCAGCCGTAAGCAAACCCCGGAAGAAACTACACTGGCAGACCAGCCGATTCAAGTGGCCGCTAAAGACGTATTCCCTCTCCCTCTGCACGAGTTCAAAGCCGACCCCGCGAAATATGAGATCCACCTCGAGCAGTTGCTTTCCAGCAACCGCATCTCCGAGGCCGTGAGCAAGATGGTCATGGAGGAGATCTGGCTGTACGTGAGGGAGCGAGGCGGGGCAGGCAGAGACAGAGAGAGGAGTTTGCACGTCGTGACGGAAGTGAACGGCGTGATCGAGCTGAAGTGGACCGAGATGAGGAAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGATGATGATGAAGATGGGCCTCGAGAGAATGAGGAGCCGGAAATCTGCAGTATCTGTTTGGATGAACTGGATGGCTGGAAACGGGAGAAGATTCAGGTTCCGTGCGGGCATGTGTACCATGATTTGTGTATTTATCACTGGTCCATCGATAATGCTACATGCCCTTTGTGCCGAGCTTCTTTGGACGTCCAACACTGA ATGGCTGTGTTTGCACTCTGGTTGTTCAAGTGCCGAATCGACAACGGCAGCAGCAGCGCAGTTTCGGGCGAGCAACCGAACGAAACGGTGGAACTCCGACTGCGACGGTTCAGCCGTAAGCAAACCCCGGAAGAAACTACACTGGCAGACCAGCCGATTCAAGTGGCCGCTAAAGACGTATTCCCTCTCCCTCTGCACGAGTTCAAAGCCGACCCCGCGAAATATGAGATCCACCTCGAGCAGTTGCTTTCCAGCAACCGCATCTCCGAGGCCGTGAGCAAGATGGTCATGGAGGAGATCTGGCTGTACGTGAGGGAGCGAGGCGGGGCAGGCAGAGACAGAGAGAGGAGTTTGCACGTCGTGACGGAAGTGAACGGCGTGATCGAGCTGAAGTGGACCGAGATGAGGAAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGATGATGATGAAGATGGGCCTCGAGAGAATGAGGAGCCGGAAATCTGCAGTATCTGTTTGGATGAACTGGATGGCTGGAAACGGGAGAAGATTCAGGTTCCGTGCGGGCATGTGTACCATGATTTGTGTATTTATCACTGGTCCATCGATAATGCTACATGCCCTTTGTGCCGAGCTTCTTTGGACGTCCAACACTGA ATGGCTGTGTTTGCACTCTGGTTGTTCAAGTGCCGAATCGACAACGGCAGCAGCAGCGCAGTTTCGGGCGAGCAACCGAACGAAACGGTGGAACTCCGACTGCGACGGTTCAGCCGTAAGCAAACCCCGGAAGAAACTACACTGGCAGACCAGCCGATTCAAGTGGCCGCTAAAGACGTATTCCCTCTCCCTCTGCACGAGTTCAAAGCCGACCCCGCGAAATATGAGATCCACCTCGAGCAGTTGCTTTCCAGCAACCGCATCTCCGAGGCCGTGAGCAAGATGGTCATGGAGGAGATCTGGCTGTACGTGAGGGAGCGAGGCGGGGCAGGCAGAGACAGAGAGAGGAGTTTGCACGTCGTGACGGAAGTGAACGGCGTGATCGAGCTGAAGTGGACCGAGATGAGGAAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGATGATGATGAAGATGGGCCTCGAGAGAATGAGGAGCCGGAAATCTGCAGTATCTGTTTGGATGAACTGGATGGCTGGAAACGGGAGAAGATTCAGGTTCCGTGCGGGCATGTGTACCATGATTTGTGTATTTATCACTGGTCCATCGATAATGCTACATGCCCTTTGTGCCGAGCTTCTTTGGACGTCCAACACTGA MAVFALWLFKCRIDNGSSSAVSGEQPNETVELRLRRFSRKQTPEETTLADQPIQVAAKDVFPLPLHEFKADPAKYEIHLEQLLSSNRISEAVSKMVMEEIWLYVRERGGAGRDRERSLHVVTEVNGVIELKWTEMRKEEEEEEEEEDDDEDGPRENEEPEICSICLDELDGWKREKIQVPCGHVYHDLCIYHWSIDNATCPLCRASLDVQH Homology
BLAST of Sed0019135 vs. NCBI nr
Match: KAG6595648.1 (hypothetical protein SDJN03_12201, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 91.7 bits (226), Expect = 8.4e-15 Identity = 75/219 (34.25%), Postives = 109/219 (49.77%), Query Frame = 0
BLAST of Sed0019135 vs. NCBI nr
Match: KAG6595650.1 (hypothetical protein SDJN03_12203, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 91.3 bits (225), Expect = 1.1e-14 Identity = 75/219 (34.25%), Postives = 109/219 (49.77%), Query Frame = 0
BLAST of Sed0019135 vs. NCBI nr
Match: XP_023518048.1 (uncharacterized protein LOC111781594 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 89.0 bits (219), Expect = 5.4e-14 Identity = 75/217 (34.56%), Postives = 106/217 (48.85%), Query Frame = 0
BLAST of Sed0019135 vs. NCBI nr
Match: XP_022151640.1 (E3 ubiquitin-protein ligase RNF181-like [Momordica charantia]) HSP 1 Score: 87.0 bits (214), Expect = 2.1e-13 Identity = 68/210 (32.38%), Postives = 103/210 (49.05%), Query Frame = 0
BLAST of Sed0019135 vs. NCBI nr
Match: XP_023539471.1 (uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 82.4 bits (202), Expect = 5.1e-12 Identity = 62/227 (27.31%), Postives = 104/227 (45.81%), Query Frame = 0
BLAST of Sed0019135 vs. ExPASy Swiss-Prot
Match: Q90ZT7 (E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis OX=8355 GN=rnf111-a PE=2 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 2.1e-05 Identity = 27/83 (32.53%), Postives = 44/83 (53.01%), Query Frame = 0
BLAST of Sed0019135 vs. ExPASy Swiss-Prot
Match: Q6NRV8 (E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis OX=8355 GN=rnf111-b PE=2 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 2.1e-05 Identity = 27/83 (32.53%), Postives = 44/83 (53.01%), Query Frame = 0
BLAST of Sed0019135 vs. ExPASy Swiss-Prot
Match: Q66J97 (E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis OX=8355 GN=rnf111-c PE=2 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 2.1e-05 Identity = 27/83 (32.53%), Postives = 44/83 (53.01%), Query Frame = 0
BLAST of Sed0019135 vs. ExPASy Swiss-Prot
Match: Q0V9R0 (E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis OX=8364 GN=rnf111 PE=2 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 2.1e-05 Identity = 27/83 (32.53%), Postives = 44/83 (53.01%), Query Frame = 0
BLAST of Sed0019135 vs. ExPASy Swiss-Prot
Match: Q9SRM0 (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 4.8e-05 Identity = 26/74 (35.14%), Postives = 37/74 (50.00%), Query Frame = 0
BLAST of Sed0019135 vs. ExPASy TrEMBL
Match: A0A6J1DBR5 (E3 ubiquitin-protein ligase RNF181-like OS=Momordica charantia OX=3673 GN=LOC111019547 PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 1.0e-13 Identity = 68/210 (32.38%), Postives = 103/210 (49.05%), Query Frame = 0
BLAST of Sed0019135 vs. ExPASy TrEMBL
Match: A0A6J1G7Z5 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC111451666 PE=4 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 7.1e-12 Identity = 66/216 (30.56%), Postives = 100/216 (46.30%), Query Frame = 0
BLAST of Sed0019135 vs. ExPASy TrEMBL
Match: A0A6J1KYV1 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499496 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 1.2e-11 Identity = 66/216 (30.56%), Postives = 99/216 (45.83%), Query Frame = 0
BLAST of Sed0019135 vs. ExPASy TrEMBL
Match: A0A6J1J8T7 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111483640 PE=4 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 2.7e-11 Identity = 62/203 (30.54%), Postives = 102/203 (50.25%), Query Frame = 0
BLAST of Sed0019135 vs. ExPASy TrEMBL
Match: A0A5A7TLM1 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001430 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 7.9e-11 Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 0
BLAST of Sed0019135 vs. TAIR 10
Match: AT1G35330.1 (RING/U-box superfamily protein ) HSP 1 Score: 55.1 bits (131), Expect = 8.1e-08 Identity = 20/46 (43.48%), Postives = 29/46 (63.04%), Query Frame = 0
BLAST of Sed0019135 vs. TAIR 10
Match: AT2G35000.1 (RING/U-box superfamily protein ) HSP 1 Score: 52.8 bits (125), Expect = 4.0e-07 Identity = 19/46 (41.30%), Postives = 30/46 (65.22%), Query Frame = 0
BLAST of Sed0019135 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein ) HSP 1 Score: 52.8 bits (125), Expect = 4.0e-07 Identity = 20/50 (40.00%), Postives = 29/50 (58.00%), Query Frame = 0
BLAST of Sed0019135 vs. TAIR 10
Match: AT4G00305.1 (RING/U-box superfamily protein ) HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06 Identity = 26/59 (44.07%), Postives = 28/59 (47.46%), Query Frame = 0
BLAST of Sed0019135 vs. TAIR 10
Match: AT1G51930.1 (RING/U-box superfamily protein ) HSP 1 Score: 50.1 bits (118), Expect = 2.6e-06 Identity = 25/63 (39.68%), Postives = 34/63 (53.97%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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