Sed0018936 (gene) Chayote v1

Overview
NameSed0018936
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPlant/protein
LocationLG08: 5140777 .. 5141531 (+)
RNA-Seq ExpressionSed0018936
SyntenySed0018936
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAAGCAAACAACCCCAATTCCTCTCTCTCTCTAAAAAAGCATTTTCCGATCATCTCTCTCTCTAAACATGGCGACCAACCTCCTCACTTTCTCCCCCGCCGGCATCCGCGCCTCCACCCCCTCCACCGACCGCCGCCCCGACCAGACTCGCCGGAGAACCTCCGCTGCCGCCGCCGCTAACTGGTGGGCCCCGATCCTGGGCTGGTCCTCAGAGCCGGACTACATCGACTCCGGCAACAAGGCTGATCCTCAAAACCTCGCCGGCGGAGCTCCGGAGTCCGATCCGGAGCCGAGATCGGCGAGGGCTCGGTTTACCGAGGCGAAGGCGCGGCAGCTCCGGCTGATGACGAAGGGAACGGATTCGTTTCACGACGCTATGTACCACTCGGCCATCGCATCTCGCCTCGCTTCCGACTTCGAAAATCGGACCGATTTCTGATCTCCGCCGGTACCGGCGGCCGCCGATCTATCTCTACTACTGCTTTTGTAATTATGTAGAATTGTATAAATTTAATTGCCAATTTCATGGATGATAAGTCGTAATTAAACTGTTTCTCTATCTGTTGTGTTTCTTTTTGGTTCTTTGTTTTGCCATTAGTTCTTAAATTTGTTAGATTAGTGACTGTATTAGTTTTCGTTTCGGGGCTGGAATGAATGAATTAATTTAACGGTGGATGAAGTATAAATTCACCATTGACGCGACACAAACAAATGGTGAAAGAACAAGTATTTAATAATAGATTAATTATAATT

mRNA sequence

AGGAAGCAAACAACCCCAATTCCTCTCTCTCTCTAAAAAAGCATTTTCCGATCATCTCTCTCTCTAAACATGGCGACCAACCTCCTCACTTTCTCCCCCGCCGGCATCCGCGCCTCCACCCCCTCCACCGACCGCCGCCCCGACCAGACTCGCCGGAGAACCTCCGCTGCCGCCGCCGCTAACTGGTGGGCCCCGATCCTGGGCTGGTCCTCAGAGCCGGACTACATCGACTCCGGCAACAAGGCTGATCCTCAAAACCTCGCCGGCGGAGCTCCGGAGTCCGATCCGGAGCCGAGATCGGCGAGGGCTCGGTTTACCGAGGCGAAGGCGCGGCAGCTCCGGCTGATGACGAAGGGAACGGATTCGTTTCACGACGCTATGTACCACTCGGCCATCGCATCTCGCCTCGCTTCCGACTTCGAAAATCGGACCGATTTCTGATCTCCGCCGGTACCGGCGGCCGCCGATCTATCTCTACTACTGCTTTTGTAATTATGTAGAATTGTATAAATTTAATTGCCAATTTCATGGATGATAAGTCGTAATTAAACTGTTTCTCTATCTGTTGTGTTTCTTTTTGGTTCTTTGTTTTGCCATTAGTTCTTAAATTTGTTAGATTAGTGACTGTATTAGTTTTCGTTTCGGGGCTGGAATGAATGAATTAATTTAACGGTGGATGAAGTATAAATTCACCATTGACGCGACACAAACAAATGGTGAAAGAACAAGTATTTAATAATAGATTAATTATAATT

Coding sequence (CDS)

ATGGCGACCAACCTCCTCACTTTCTCCCCCGCCGGCATCCGCGCCTCCACCCCCTCCACCGACCGCCGCCCCGACCAGACTCGCCGGAGAACCTCCGCTGCCGCCGCCGCTAACTGGTGGGCCCCGATCCTGGGCTGGTCCTCAGAGCCGGACTACATCGACTCCGGCAACAAGGCTGATCCTCAAAACCTCGCCGGCGGAGCTCCGGAGTCCGATCCGGAGCCGAGATCGGCGAGGGCTCGGTTTACCGAGGCGAAGGCGCGGCAGCTCCGGCTGATGACGAAGGGAACGGATTCGTTTCACGACGCTATGTACCACTCGGCCATCGCATCTCGCCTCGCTTCCGACTTCGAAAATCGGACCGATTTCTGA

Protein sequence

MATNLLTFSPAGIRASTPSTDRRPDQTRRRTSAAAAANWWAPILGWSSEPDYIDSGNKADPQNLAGGAPESDPEPRSARARFTEAKARQLRLMTKGTDSFHDAMYHSAIASRLASDFENRTDF
Homology
BLAST of Sed0018936 vs. NCBI nr
Match: XP_038880363.1 (uncharacterized protein LOC120072011 [Benincasa hispida])

HSP 1 Score: 172.9 bits (437), Expect = 1.7e-39
Identity = 89/127 (70.08%), Postives = 101/127 (79.53%), Query Frame = 0

Query: 1   MATNLLTFSPAGIRASTPSTDRRPDQTRRRTSAAAAANWWAPILGWSSEPDYIDSGNKAD 60
           MATNLLTF PAGIRA   S DRR D  RR+TS  +++NWWAP+ GWSSEPDYIDS NKA+
Sbjct: 1   MATNLLTFPPAGIRACAASADRRSDHNRRKTS--SSSNWWAPVFGWSSEPDYIDSANKAE 60

Query: 61  PQNLAGGAPESDPEPRSARAR-----FTEAKARQLRLMTKGTDSFHDAMYHSAIASRLAS 120
           PQ+LAGG  +SDPE +S RAR     FTEAKARQLR+MT  T+SFHD MYHSAIASRLAS
Sbjct: 61  PQDLAGGVSKSDPETKSVRARFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASRLAS 120

Query: 121 DFENRTD 123
           DF+ R D
Sbjct: 121 DFKTRAD 125

BLAST of Sed0018936 vs. NCBI nr
Match: XP_011656185.1 (uncharacterized protein LOC105435656 [Cucumis sativus] >KGN65295.1 hypothetical protein Csa_019984 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-38
Identity = 88/127 (69.29%), Postives = 102/127 (80.31%), Query Frame = 0

Query: 1   MATNLLTFSPAGIRASTPSTDRRPDQTRRRTSAAAAANWWAPILGWSSEPDYIDSGNKAD 60
           MATNLLTF PAGIRA   S DRR D +RR+TS  +++NWWAP+ GWSSEPDYIDSGNKA+
Sbjct: 1   MATNLLTFPPAGIRACASSADRRSDHSRRKTS--SSSNWWAPVFGWSSEPDYIDSGNKAE 60

Query: 61  PQNLAGGAPESDPEPRSARAR-----FTEAKARQLRLMTKGTDSFHDAMYHSAIASRLAS 120
           PQNLAGG+ + D E +S R R     FTEAKARQLR+MT  T+SFHD MYHSAIASRLAS
Sbjct: 61  PQNLAGGSSKPDLETKSLRGRFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASRLAS 120

Query: 121 DFENRTD 123
           DF++R D
Sbjct: 121 DFKSRED 125

BLAST of Sed0018936 vs. NCBI nr
Match: XP_016903293.1 (PREDICTED: uncharacterized protein LOC103502747 [Cucumis melo] >KAA0046733.1 uncharacterized protein E6C27_scaffold216G00140 [Cucumis melo var. makuwa] >TYK14510.1 uncharacterized protein E5676_scaffold15G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-35
Identity = 86/128 (67.19%), Postives = 99/128 (77.34%), Query Frame = 0

Query: 1   MATNLLTFSPAGIRASTPSTDRRPDQTRRRTSAAAAANWWAPILGWSSEPDYIDS-GNKA 60
           MATNLLTF+PAGIRA   S DRR D  RR+  A+++ NWWAP+ GWSSEPDYIDS  NKA
Sbjct: 1   MATNLLTFTPAGIRACAASADRRSDLNRRK--ASSSTNWWAPVFGWSSEPDYIDSAANKA 60

Query: 61  DPQNLAGGAPESDPEPRSARAR-----FTEAKARQLRLMTKGTDSFHDAMYHSAIASRLA 120
           +PQNLAG A + D E +S R R     FTEAKARQLR+MT  T+SFHD MYHSAIASRLA
Sbjct: 61  EPQNLAGAASKPDLETKSVRGRFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASRLA 120

Query: 121 SDFENRTD 123
           SDF++R D
Sbjct: 121 SDFKSRGD 126

BLAST of Sed0018936 vs. NCBI nr
Match: KAG6589876.1 (hypothetical protein SDJN03_15299, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023547.1 hypothetical protein SDJN02_14573, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153.3 bits (386), Expect = 1.4e-33
Identity = 78/127 (61.42%), Postives = 98/127 (77.17%), Query Frame = 0

Query: 1   MATNLLTFSPAGIRASTPSTDRRPDQTRRRTSAAAAANWWAPILGWSSEPDYIDSGNKAD 60
           MAT+L TF+P  IRA   S D      R+ +S+++++NWWAP+ GWSSEPDYIDSGNK++
Sbjct: 1   MATSLFTFAPTSIRACASSADH---NRRKTSSSSSSSNWWAPVFGWSSEPDYIDSGNKSN 60

Query: 61  PQNLAGGAPESDPEPRSARAR-----FTEAKARQLRLMTKGTDSFHDAMYHSAIASRLAS 120
           P+NLA G  +SDPE +SAR R     FTE+KARQLRLMT  T+SFHD MYHSAIASRLA+
Sbjct: 61  PKNLADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLAT 120

Query: 121 DFENRTD 123
           DF++R D
Sbjct: 121 DFKSRAD 124

BLAST of Sed0018936 vs. NCBI nr
Match: XP_022960569.1 (uncharacterized protein LOC111461308 [Cucurbita moschata])

HSP 1 Score: 152.1 bits (383), Expect = 3.0e-33
Identity = 77/127 (60.63%), Postives = 99/127 (77.95%), Query Frame = 0

Query: 1   MATNLLTFSPAGIRASTPSTDRRPDQTRRRTSAAAAANWWAPILGWSSEPDYIDSGNKAD 60
           MATNL TF+P  IRA   S D   ++ +  +S+++++NWWAP+ GWSSEPDYIDSGNK++
Sbjct: 1   MATNLFTFAPTSIRACASSADH--NRRKASSSSSSSSNWWAPVFGWSSEPDYIDSGNKSN 60

Query: 61  PQNLAGGAPESDPEPRSARAR-----FTEAKARQLRLMTKGTDSFHDAMYHSAIASRLAS 120
           P+NLA G  +SDPE +S+R R     FTE+KARQLRLMT  T+SFHD MYHSAIASRLA+
Sbjct: 61  PKNLADGVSKSDPETKSSRNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLAT 120

Query: 121 DFENRTD 123
           DF++R D
Sbjct: 121 DFKSRGD 125

BLAST of Sed0018936 vs. ExPASy TrEMBL
Match: A0A0A0LTN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G303705 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 5.2e-39
Identity = 88/127 (69.29%), Postives = 102/127 (80.31%), Query Frame = 0

Query: 1   MATNLLTFSPAGIRASTPSTDRRPDQTRRRTSAAAAANWWAPILGWSSEPDYIDSGNKAD 60
           MATNLLTF PAGIRA   S DRR D +RR+TS  +++NWWAP+ GWSSEPDYIDSGNKA+
Sbjct: 1   MATNLLTFPPAGIRACASSADRRSDHSRRKTS--SSSNWWAPVFGWSSEPDYIDSGNKAE 60

Query: 61  PQNLAGGAPESDPEPRSARAR-----FTEAKARQLRLMTKGTDSFHDAMYHSAIASRLAS 120
           PQNLAGG+ + D E +S R R     FTEAKARQLR+MT  T+SFHD MYHSAIASRLAS
Sbjct: 61  PQNLAGGSSKPDLETKSLRGRFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASRLAS 120

Query: 121 DFENRTD 123
           DF++R D
Sbjct: 121 DFKSRED 125

BLAST of Sed0018936 vs. ExPASy TrEMBL
Match: A0A5D3CSV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00250 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.1e-36
Identity = 86/128 (67.19%), Postives = 99/128 (77.34%), Query Frame = 0

Query: 1   MATNLLTFSPAGIRASTPSTDRRPDQTRRRTSAAAAANWWAPILGWSSEPDYIDS-GNKA 60
           MATNLLTF+PAGIRA   S DRR D  RR+  A+++ NWWAP+ GWSSEPDYIDS  NKA
Sbjct: 1   MATNLLTFTPAGIRACAASADRRSDLNRRK--ASSSTNWWAPVFGWSSEPDYIDSAANKA 60

Query: 61  DPQNLAGGAPESDPEPRSARAR-----FTEAKARQLRLMTKGTDSFHDAMYHSAIASRLA 120
           +PQNLAG A + D E +S R R     FTEAKARQLR+MT  T+SFHD MYHSAIASRLA
Sbjct: 61  EPQNLAGAASKPDLETKSVRGRFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASRLA 120

Query: 121 SDFENRTD 123
           SDF++R D
Sbjct: 121 SDFKSRGD 126

BLAST of Sed0018936 vs. ExPASy TrEMBL
Match: A0A1S4E4Y4 (uncharacterized protein LOC103502747 OS=Cucumis melo OX=3656 GN=LOC103502747 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.1e-36
Identity = 86/128 (67.19%), Postives = 99/128 (77.34%), Query Frame = 0

Query: 1   MATNLLTFSPAGIRASTPSTDRRPDQTRRRTSAAAAANWWAPILGWSSEPDYIDS-GNKA 60
           MATNLLTF+PAGIRA   S DRR D  RR+  A+++ NWWAP+ GWSSEPDYIDS  NKA
Sbjct: 1   MATNLLTFTPAGIRACAASADRRSDLNRRK--ASSSTNWWAPVFGWSSEPDYIDSAANKA 60

Query: 61  DPQNLAGGAPESDPEPRSARAR-----FTEAKARQLRLMTKGTDSFHDAMYHSAIASRLA 120
           +PQNLAG A + D E +S R R     FTEAKARQLR+MT  T+SFHD MYHSAIASRLA
Sbjct: 61  EPQNLAGAASKPDLETKSVRGRFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASRLA 120

Query: 121 SDFENRTD 123
           SDF++R D
Sbjct: 121 SDFKSRGD 126

BLAST of Sed0018936 vs. ExPASy TrEMBL
Match: A0A6J1HBD8 (uncharacterized protein LOC111461308 OS=Cucurbita moschata OX=3662 GN=LOC111461308 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.5e-33
Identity = 77/127 (60.63%), Postives = 99/127 (77.95%), Query Frame = 0

Query: 1   MATNLLTFSPAGIRASTPSTDRRPDQTRRRTSAAAAANWWAPILGWSSEPDYIDSGNKAD 60
           MATNL TF+P  IRA   S D   ++ +  +S+++++NWWAP+ GWSSEPDYIDSGNK++
Sbjct: 1   MATNLFTFAPTSIRACASSADH--NRRKASSSSSSSSNWWAPVFGWSSEPDYIDSGNKSN 60

Query: 61  PQNLAGGAPESDPEPRSARAR-----FTEAKARQLRLMTKGTDSFHDAMYHSAIASRLAS 120
           P+NLA G  +SDPE +S+R R     FTE+KARQLRLMT  T+SFHD MYHSAIASRLA+
Sbjct: 61  PKNLADGVSKSDPETKSSRNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLAT 120

Query: 121 DFENRTD 123
           DF++R D
Sbjct: 121 DFKSRGD 125

BLAST of Sed0018936 vs. ExPASy TrEMBL
Match: A0A6J1JBM9 (uncharacterized protein LOC111485309 OS=Cucurbita maxima OX=3661 GN=LOC111485309 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 8.1e-32
Identity = 76/127 (59.84%), Postives = 94/127 (74.02%), Query Frame = 0

Query: 1   MATNLLTFSPAGIRASTPSTDRRPDQTRRRTSAAAAANWWAPILGWSSEPDYIDSGNKAD 60
           MATNL TF+P  IRA   S D       RR ++++++NWWAP+ GWSSEPDYIDS NK++
Sbjct: 1   MATNLFTFAPTSIRACASSADH-----NRRKTSSSSSNWWAPVFGWSSEPDYIDSANKSN 60

Query: 61  PQNLAGGAPESDPEPRSARAR-----FTEAKARQLRLMTKGTDSFHDAMYHSAIASRLAS 120
           P+  A G  +SDPE +SAR R     FTE+KARQLRLMT  T+SFHD MYHSAIASRLA+
Sbjct: 61  PKTPADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLAT 120

Query: 121 DFENRTD 123
           DF++R D
Sbjct: 121 DFKSRGD 122

BLAST of Sed0018936 vs. TAIR 10
Match: AT1G52720.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.3 bits (194), Expect = 2.3e-15
Identity = 48/110 (43.64%), Postives = 62/110 (56.36%), Query Frame = 0

Query: 13  IRASTPSTDRRPDQTRRRTSAAAAANWWAPILGWSSEPDYIDSGNKADPQNLAGGAPESD 72
           IRAS+ S    PDQ R++++A     WWAP+ G  S+PDY++  +     N       S 
Sbjct: 13  IRASSGSGSLNPDQNRKKSAA-----WWAPLFGLPSDPDYLNIESSCSTVN-PDKTDISG 72

Query: 73  PEPRSARARFTEAKARQLRLMTKGTDSFHDAMYHSAIASRLASDFENRTD 123
              +  R  FTE KA+QLR  T    +FHD MYHSAIASRLASD   R +
Sbjct: 73  SGQKFRRGCFTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDITGRVE 116

BLAST of Sed0018936 vs. TAIR 10
Match: AT3G15630.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-14
Identity = 51/116 (43.97%), Postives = 67/116 (57.76%), Query Frame = 0

Query: 1   MATNLLTFSPAGIRASTPSTDRRPDQTRRRTSAAAAANWWAPILGWSSEPDYIDSGNKAD 60
           MAT +   + + IRAS+ S     D  R++    ++ +WWAP+ G SSEPDY++      
Sbjct: 1   MATIISCSALSSIRASSES-----DPARKK--PVSSVSWWAPLFGMSSEPDYVNK----- 60

Query: 61  PQNLAGGAPESDPEPRSARARFTEAKARQLRLMTKGTDSFHDAMYHSAIASRLASD 117
             NL     ++  E RS R   TE KA+QLR  T    +FHD MYHSAIASRLASD
Sbjct: 61  TVNLESDLDKA--EKRSLRCCLTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASD 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038880363.11.7e-3970.08uncharacterized protein LOC120072011 [Benincasa hispida][more]
XP_011656185.11.1e-3869.29uncharacterized protein LOC105435656 [Cucumis sativus] >KGN65295.1 hypothetical ... [more]
XP_016903293.11.5e-3567.19PREDICTED: uncharacterized protein LOC103502747 [Cucumis melo] >KAA0046733.1 unc... [more]
KAG6589876.11.4e-3361.42hypothetical protein SDJN03_15299, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022960569.13.0e-3360.63uncharacterized protein LOC111461308 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LTN75.2e-3969.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G303705 PE=4 SV=1[more]
A0A5D3CSV67.1e-3667.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S4E4Y47.1e-3667.19uncharacterized protein LOC103502747 OS=Cucumis melo OX=3656 GN=LOC103502747 PE=... [more]
A0A6J1HBD81.5e-3360.63uncharacterized protein LOC111461308 OS=Cucurbita moschata OX=3662 GN=LOC1114613... [more]
A0A6J1JBM98.1e-3259.84uncharacterized protein LOC111485309 OS=Cucurbita maxima OX=3661 GN=LOC111485309... [more]
Match NameE-valueIdentityDescription
AT1G52720.12.3e-1543.64unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G15630.11.2e-1443.97unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availablePANTHERPTHR34198OS01G0175100 PROTEINcoord: 1..122
NoneNo IPR availablePANTHERPTHR34198:SF18PROTEIN, PUTATIVE-RELATEDcoord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0018936.1Sed0018936.1mRNA