Sed0018936 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGGAAGCAAACAACCCCAATTCCTCTCTCTCTCTAAAAAAGCATTTTCCGATCATCTCTCTCTCTAAACATGGCGACCAACCTCCTCACTTTCTCCCCCGCCGGCATCCGCGCCTCCACCCCCTCCACCGACCGCCGCCCCGACCAGACTCGCCGGAGAACCTCCGCTGCCGCCGCCGCTAACTGGTGGGCCCCGATCCTGGGCTGGTCCTCAGAGCCGGACTACATCGACTCCGGCAACAAGGCTGATCCTCAAAACCTCGCCGGCGGAGCTCCGGAGTCCGATCCGGAGCCGAGATCGGCGAGGGCTCGGTTTACCGAGGCGAAGGCGCGGCAGCTCCGGCTGATGACGAAGGGAACGGATTCGTTTCACGACGCTATGTACCACTCGGCCATCGCATCTCGCCTCGCTTCCGACTTCGAAAATCGGACCGATTTCTGATCTCCGCCGGTACCGGCGGCCGCCGATCTATCTCTACTACTGCTTTTGTAATTATGTAGAATTGTATAAATTTAATTGCCAATTTCATGGATGATAAGTCGTAATTAAACTGTTTCTCTATCTGTTGTGTTTCTTTTTGGTTCTTTGTTTTGCCATTAGTTCTTAAATTTGTTAGATTAGTGACTGTATTAGTTTTCGTTTCGGGGCTGGAATGAATGAATTAATTTAACGGTGGATGAAGTATAAATTCACCATTGACGCGACACAAACAAATGGTGAAAGAACAAGTATTTAATAATAGATTAATTATAATT AGGAAGCAAACAACCCCAATTCCTCTCTCTCTCTAAAAAAGCATTTTCCGATCATCTCTCTCTCTAAACATGGCGACCAACCTCCTCACTTTCTCCCCCGCCGGCATCCGCGCCTCCACCCCCTCCACCGACCGCCGCCCCGACCAGACTCGCCGGAGAACCTCCGCTGCCGCCGCCGCTAACTGGTGGGCCCCGATCCTGGGCTGGTCCTCAGAGCCGGACTACATCGACTCCGGCAACAAGGCTGATCCTCAAAACCTCGCCGGCGGAGCTCCGGAGTCCGATCCGGAGCCGAGATCGGCGAGGGCTCGGTTTACCGAGGCGAAGGCGCGGCAGCTCCGGCTGATGACGAAGGGAACGGATTCGTTTCACGACGCTATGTACCACTCGGCCATCGCATCTCGCCTCGCTTCCGACTTCGAAAATCGGACCGATTTCTGATCTCCGCCGGTACCGGCGGCCGCCGATCTATCTCTACTACTGCTTTTGTAATTATGTAGAATTGTATAAATTTAATTGCCAATTTCATGGATGATAAGTCGTAATTAAACTGTTTCTCTATCTGTTGTGTTTCTTTTTGGTTCTTTGTTTTGCCATTAGTTCTTAAATTTGTTAGATTAGTGACTGTATTAGTTTTCGTTTCGGGGCTGGAATGAATGAATTAATTTAACGGTGGATGAAGTATAAATTCACCATTGACGCGACACAAACAAATGGTGAAAGAACAAGTATTTAATAATAGATTAATTATAATT ATGGCGACCAACCTCCTCACTTTCTCCCCCGCCGGCATCCGCGCCTCCACCCCCTCCACCGACCGCCGCCCCGACCAGACTCGCCGGAGAACCTCCGCTGCCGCCGCCGCTAACTGGTGGGCCCCGATCCTGGGCTGGTCCTCAGAGCCGGACTACATCGACTCCGGCAACAAGGCTGATCCTCAAAACCTCGCCGGCGGAGCTCCGGAGTCCGATCCGGAGCCGAGATCGGCGAGGGCTCGGTTTACCGAGGCGAAGGCGCGGCAGCTCCGGCTGATGACGAAGGGAACGGATTCGTTTCACGACGCTATGTACCACTCGGCCATCGCATCTCGCCTCGCTTCCGACTTCGAAAATCGGACCGATTTCTGA MATNLLTFSPAGIRASTPSTDRRPDQTRRRTSAAAAANWWAPILGWSSEPDYIDSGNKADPQNLAGGAPESDPEPRSARARFTEAKARQLRLMTKGTDSFHDAMYHSAIASRLASDFENRTDF Homology
BLAST of Sed0018936 vs. NCBI nr
Match: XP_038880363.1 (uncharacterized protein LOC120072011 [Benincasa hispida]) HSP 1 Score: 172.9 bits (437), Expect = 1.7e-39 Identity = 89/127 (70.08%), Postives = 101/127 (79.53%), Query Frame = 0
BLAST of Sed0018936 vs. NCBI nr
Match: XP_011656185.1 (uncharacterized protein LOC105435656 [Cucumis sativus] >KGN65295.1 hypothetical protein Csa_019984 [Cucumis sativus]) HSP 1 Score: 170.2 bits (430), Expect = 1.1e-38 Identity = 88/127 (69.29%), Postives = 102/127 (80.31%), Query Frame = 0
BLAST of Sed0018936 vs. NCBI nr
Match: XP_016903293.1 (PREDICTED: uncharacterized protein LOC103502747 [Cucumis melo] >KAA0046733.1 uncharacterized protein E6C27_scaffold216G00140 [Cucumis melo var. makuwa] >TYK14510.1 uncharacterized protein E5676_scaffold15G00250 [Cucumis melo var. makuwa]) HSP 1 Score: 159.8 bits (403), Expect = 1.5e-35 Identity = 86/128 (67.19%), Postives = 99/128 (77.34%), Query Frame = 0
BLAST of Sed0018936 vs. NCBI nr
Match: KAG6589876.1 (hypothetical protein SDJN03_15299, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023547.1 hypothetical protein SDJN02_14573, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 153.3 bits (386), Expect = 1.4e-33 Identity = 78/127 (61.42%), Postives = 98/127 (77.17%), Query Frame = 0
BLAST of Sed0018936 vs. NCBI nr
Match: XP_022960569.1 (uncharacterized protein LOC111461308 [Cucurbita moschata]) HSP 1 Score: 152.1 bits (383), Expect = 3.0e-33 Identity = 77/127 (60.63%), Postives = 99/127 (77.95%), Query Frame = 0
BLAST of Sed0018936 vs. ExPASy TrEMBL
Match: A0A0A0LTN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G303705 PE=4 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 5.2e-39 Identity = 88/127 (69.29%), Postives = 102/127 (80.31%), Query Frame = 0
BLAST of Sed0018936 vs. ExPASy TrEMBL
Match: A0A5D3CSV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00250 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 7.1e-36 Identity = 86/128 (67.19%), Postives = 99/128 (77.34%), Query Frame = 0
BLAST of Sed0018936 vs. ExPASy TrEMBL
Match: A0A1S4E4Y4 (uncharacterized protein LOC103502747 OS=Cucumis melo OX=3656 GN=LOC103502747 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 7.1e-36 Identity = 86/128 (67.19%), Postives = 99/128 (77.34%), Query Frame = 0
BLAST of Sed0018936 vs. ExPASy TrEMBL
Match: A0A6J1HBD8 (uncharacterized protein LOC111461308 OS=Cucurbita moschata OX=3662 GN=LOC111461308 PE=4 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 1.5e-33 Identity = 77/127 (60.63%), Postives = 99/127 (77.95%), Query Frame = 0
BLAST of Sed0018936 vs. ExPASy TrEMBL
Match: A0A6J1JBM9 (uncharacterized protein LOC111485309 OS=Cucurbita maxima OX=3661 GN=LOC111485309 PE=4 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 8.1e-32 Identity = 76/127 (59.84%), Postives = 94/127 (74.02%), Query Frame = 0
BLAST of Sed0018936 vs. TAIR 10
Match: AT1G52720.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 79.3 bits (194), Expect = 2.3e-15 Identity = 48/110 (43.64%), Postives = 62/110 (56.36%), Query Frame = 0
BLAST of Sed0018936 vs. TAIR 10
Match: AT3G15630.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 77.0 bits (188), Expect = 1.2e-14 Identity = 51/116 (43.97%), Postives = 67/116 (57.76%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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