Sed0018745 (gene) Chayote v1

Overview


Name	Sed0018745
Type	gene
Organism	Sechium edule (Chayote v1)
Description	30S ribosomal protein 2, chloroplastic-like
Location	LG09: 38376051 .. 38380768 (-)
RNA-Seq Expression	Sed0018745
Synteny	Sed0018745

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAGGCCACGTGCGAGCAGCACGTGTGTAGCTCAATCTTCTTCTCGACCGGATAAACCTCAACCTCGCCCAAGGCTCTGCAATTTTTCTTTCTCACAGTCGTAACCAAAACCTCCAGAGACCAAAAATGGCTTCAATCTCATCAGTGTTATCTTCAACAAATTTCATCCACAGTTCCAAAAAACCCATTGAAATCCCACAAAAATCCCCCAAACAATTTTTTAAACCAACCCCATTTCACCGCCGTCAAACCCTCCTTCAAATCTCCGCCGCAAAACGGCCGACGAGACTTTTCGCCGTCGCAGAAGCGGCGGTTGCCGCCCAGGATTCCACCTCGGTGGCGGCGAGGAAACTGTACGTTGGGAATATACCTAGAAATGTGAATAATGAGGAACTTACTCGGATTGTTGAAGAACATGGGGCTGTGGAGAAGGCTGAGGTGCGTAATTTATCAATTGATTTTTTCTTTTTGGGATTTTGAATTTTGTTGGGGTTTTCTGTATGTTAGGATTACATGTCGTAAGAGTGAGACCTCGTAGTAATATAGATAAGAAAGGTGGACTACTAATCTCGTTTTTGAGATGAACATCTAAACGGTTATTCGGTCCAATAAAAAATGAAAGGAAAACTTGCAAGAAAATAATTACAAATTTAATCCCTTTTAAAAATAGCAATTATAGTCATCAGTAATAATACTTTATTAATGTCGAATGACGCAATGATTTCATTATTTGGTTGTAAATCAGTTCAATACCAGCATCACAGGTTCGATCTTGAGTATCGGTACGGTACATGTTCCCCCTCCCCCGATATGTACTAAAAAAAAAAACCTTTATTAACATATTAGTATTAATGACTATAGAAGCAAATTCTTTAAAATTTGCGCATATTTATAATTATTTTGTGGGAAGAGCAGACTTAGTACAATTCCCAAAATGAAATTAGGCACTGTATTGAGGGGCATGTTAGGATCTCACATCGGAAAGAAGATCTGTTAGTATATATATTAGAAAGATGGATTACTCCTCTCATCACTAATTAGTTTTGAGATGGACGTATATGTTCTTAGTTTGTCTTTTGAACGATTCTTGAGTTTACTTGGTTGTAAGTTCATCAAAACTGCCGGATGTAGCCTGATTTTGGCCTAAATTTGTCGACCATTTACTTCAAAATGTATTAATTTGGAGAAGGTTATCCAAATCATGATGGAAAAAGTTTGAACCCTTCTTTATACTTTTAGTTTTGAACAAGATTTCGAGGTTGGATTTGGATCTTGTCATCCATGAACCGATCACATAAGCTGTATCCATTGCTGTCGAGATTAGGGATTTGGATTTCATGGCATATGTGTTTATTCCCATGATTAAGAGGTCATTAGTTTAAATCTCCCTCATCTAATTGTAGTTGAACTTAAAAACAGATATCTTATTCAGAAGCCACTGATTAACTATCATGGAGTCGTTTAGTAGTCAAGAGGATTTTAAGTAAGTAAGAGGTTGGTATCCACCTACCTAAGAATGAATTTCCTTGAACCAACAAGGAATACTCATCCTTACATGAATCTATTATCTATTTGGCCCTGTATTGGTGTCACTCCAGCCCTGTAGCTATAATTTATCTACTTTAATTACACAATGGCATCACTTCCTTTAATGTTTTGATATGACTGTATTTTTCATATATCAATGAAAGTTTTTGTTTCCTATAAAAAAAAGAATGAATTTCCTTGACATTCAAATGTTGTAGGGTAAGACCATATATTTCGTGACAAAAGTCGAGGTGTGTGTAAACTAGTCTTAATGAAGAGAATAAAAAATTGTTATAAGGGTCCTCAAGGGGTGGCGCAATGGTCAAAGGCTTGAGTTTTGAAGGTGTGCTCCCCTCAAGGTCTCAGGTTCGATGCTCATATGTGACATTAATTTGTAGACACCTCCAGTGTCTCCGTTCCTTCGATGTCTCTTGATGCCTGGCCTAGGGACGGACGTGGTTATTATGGGTATAGTGGAGCGAAGCTACGATTTCTCAATTTTAAGGAAAAAAAAAGGTTATAAGAGAATGAAAATTGATTATGAGGAGAATATAAAGTAGTTATGGAGAAAATAAAAGGTGAGTATGGAGAAATGAGATTATGAGGAAAGATTATTGGTGGCTCTTACATGAGTAACAAAACGATTTCTCCATGTTCATTCTCATCCTTCTTGCCCCGAACACCCCCTTAGTTCTTGCTGCTTTCGGTAGTTTATCACTTCAGGTTTGTTGCATATGTATGAGAGTGTCTAACTGAGTACCTAGCTAGCTCTTTAGTCTGCTTATTGATATTTGACTCGAGTCTTCTTGGTGATAAATTCAAAGGGAAACTGATTTCAGCACTTGAAAGTTAAATGTCTTAGGCACTTTATCATATTTTTTAAAACCGTAAGAATCTGGGTCATTGTACACGCACCTCGATTACTATTACAATGCAATTGTACCATAGACATTGTATCATTTGGTTTACCGTCTTTGGACATGAATCTGACGCATGGAGATATTATTGATCTTAACTGCAGCTCTTCATTGCTAGATAAGTTACAAGACAATCTGTAATATTAGAGGATATCAATATTCAATTCTTTTACAATGTAGCCAGTTTCCCTTAAAAGTCAGTTTTTTTTCTCGGCAAGGCCATTGTACAAAACCGTCTCTAAAATCAAGTAGTTGTGACTGGCCTAGAAACGGACGTGGTTACCCCGAGTATACTGGAGGGAAGCTCCGATTTCCTAATTTCAAAAAAAAAGAGAAGAAGTAATTATGACATTTTTTGAAACCGAAAAATCGTACATTCGCTCCACTATAGTCGGAGTAACCACGCCGTTCCTAAGCCAGACATTCACGAGAGGTGTCTACAAATTAATGTAACAAATGAGTCTCGAACCTGAGACCTTAAGGGGAGCATACTTTGAAAAATTCAAGCCTTCGACCACCGCACTATCCCTTGTGGACAGCTGTTACATTTTTTATTGATAGATTATTCTTGCAATCAATTGACTTGAAGAATTCTAGCATAGTACCCTTGTTCTTAATGTTGACTTGCTAACTGTTGGTATTGGCTTTAAAACTCCAATTTTGTTCCATTTTCAGGTCATGTATGACAAATACTCTGGTAGAAGCCGCAGATTTGCCTTTGTTACTATGAAAACAGTTGACGATGCAAATGCAGCAATTGAGAAACTGAATGACACGGTAAGTTAATACTAATATAATACCAATAAAATGCAACTAAATTTGAAAAATAAACAAGAAGAACAAGACAATTGTTCCTTACCATTCACTAGATTCTACATAGATAATTTGTGCTGACGATATCAGTCTAATGACAGGAAGTTGGAGGGCGTACGATTAAAGTCAACGTAACCGAAAAGCCTTTGGTAAATACAGTAGTTGATATGTCACTTCTTCAGGCAGAGGAATCCCAATTCATCGACAGTCCCTTCAAAGTCTATGTAGGAAATCTTTCGAGTACAGTTTCTACTGAAACACTCAAAAACTTATTCGCCGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACCTCAAAATCAAGTGGCTATGGTTTTGTTACCTTTTCTTCGGAGGAGGAAGTCGAAACTGCCGTTTCATCGTTTAACAATGCTGTGAGTAATTTGCTTCCATTCTCTATCTTATCGAATGTTGTGATGCATATACCGATTTATGCAGACTCTATCTCATTTTCTGGTCCATTTCTCACAATGTCCCTTGGTTTGGTTTCATGCATTTGCAATATCTTTACTCTTGCTTGGTAGAGTTAGACATTGTCTTGTTGAGCATTCCTTGTTTCATTTTGAGTGTCCCTAAACCAGCGTTTGGGATAAGGAGGATGAGAATGATTATGAGAAAATAAAGATAAGGAAGAGAATATGAGGAAGAATGATTATCTATTTTTAGGGTGAAAAGAATGATTATGGACGAACCGGTACCTGTATCTGAGGTGCAGAGAATGGTTATGGAGAGAATTATAACTTATGTTTGGGGTGTAGTCCAAAGAATGGTTACAGGGCAACAAAATAGTGAGTATAGAGAGAATTAAAAGTGGTTTGTTTGGGAGAATGAGATTGTGAGAAAGTGAATAATGATTATGGGGGAATGATTCTCGGTGATTCAAACGTGGATAAGAGAATTGTTCTCTCCTAATCATTATTATTCTCTTTGCCTCAAACACCCCCTAAACAAGTGCATATAGAGTAACATTTTTTATCACCAACTTCTAAGAAACATTTCTTGAACTAGTTGACGGGGATGCCAACTTGAACATCTTTCGTCAGTTATCGATATTACTAACGGTTGGACGAGCTATGTTTTCTAATACGATTGACATATTACCCCGAAAACTCTCATGTACATTTTTTTGTTTCCGAATGGTTGAAAGAATCTTGTATCTGATATGTTTTTCATTGATGCAGGTGTTGGAAGGTCAAGCAATTCGTGTAAACAAGGCATAATTTTGTAGGATTTTTGTAACACAAATGTACGAAAATTTCACTTTTGCCTCTTGGCATGAAATTGATGAACAGAAGAGTGCAGTTTTTTTTCTCTCAATTTCTCTGTGGTGACCATTGATGCATAATCTTGTTTATTTACTGTTTAAGCATCCTGTTACTCTGATGAGAATGAAAATGCAAATCTTTGATTACATTTCAAACAAAAAC

mRNA sequence

GGAAGGCCACGTGCGAGCAGCACGTGTGTAGCTCAATCTTCTTCTCGACCGGATAAACCTCAACCTCGCCCAAGGCTCTGCAATTTTTCTTTCTCACAGTCGTAACCAAAACCTCCAGAGACCAAAAATGGCTTCAATCTCATCAGTGTTATCTTCAACAAATTTCATCCACAGTTCCAAAAAACCCATTGAAATCCCACAAAAATCCCCCAAACAATTTTTTAAACCAACCCCATTTCACCGCCGTCAAACCCTCCTTCAAATCTCCGCCGCAAAACGGCCGACGAGACTTTTCGCCGTCGCAGAAGCGGCGGTTGCCGCCCAGGATTCCACCTCGGTGGCGGCGAGGAAACTGTACGTTGGGAATATACCTAGAAATGTGAATAATGAGGAACTTACTCGGATTGTTGAAGAACATGGGGCTGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCTGGTAGAAGCCGCAGATTTGCCTTTGTTACTATGAAAACAGTTGACGATGCAAATGCAGCAATTGAGAAACTGAATGACACGGAAGTTGGAGGGCGTACGATTAAAGTCAACGTAACCGAAAAGCCTTTGGTAAATACAGTAGTTGATATGTCACTTCTTCAGGCAGAGGAATCCCAATTCATCGACAGTCCCTTCAAAGTCTATGTAGGAAATCTTTCGAGTACAGTTTCTACTGAAACACTCAAAAACTTATTCGCCGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACCTCAAAATCAAGTGGCTATGGTTTTGTTACCTTTTCTTCGGAGGAGGAAGTCGAAACTGCCGTTTCATCGTTTAACAATGCTGTGTTGGAAGGTCAAGCAATTCGTGTAAACAAGGCATAATTTTGTAGGATTTTTGTAACACAAATGTACGAAAATTTCACTTTTGCCTCTTGGCATGAAATTGATGAACAGAAGAGTGCAGTTTTTTTTCTCTCAATTTCTCTGTGGTGACCATTGATGCATAATCTTGTTTATTTACTGTTTAAGCATCCTGTTACTCTGATGAGAATGAAAATGCAAATCTTTGATTACATTTCAAACAAAAAC

Coding sequence (CDS)

ATGGCTTCAATCTCATCAGTGTTATCTTCAACAAATTTCATCCACAGTTCCAAAAAACCCATTGAAATCCCACAAAAATCCCCCAAACAATTTTTTAAACCAACCCCATTTCACCGCCGTCAAACCCTCCTTCAAATCTCCGCCGCAAAACGGCCGACGAGACTTTTCGCCGTCGCAGAAGCGGCGGTTGCCGCCCAGGATTCCACCTCGGTGGCGGCGAGGAAACTGTACGTTGGGAATATACCTAGAAATGTGAATAATGAGGAACTTACTCGGATTGTTGAAGAACATGGGGCTGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCTGGTAGAAGCCGCAGATTTGCCTTTGTTACTATGAAAACAGTTGACGATGCAAATGCAGCAATTGAGAAACTGAATGACACGGAAGTTGGAGGGCGTACGATTAAAGTCAACGTAACCGAAAAGCCTTTGGTAAATACAGTAGTTGATATGTCACTTCTTCAGGCAGAGGAATCCCAATTCATCGACAGTCCCTTCAAAGTCTATGTAGGAAATCTTTCGAGTACAGTTTCTACTGAAACACTCAAAAACTTATTCGCCGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACCTCAAAATCAAGTGGCTATGGTTTTGTTACCTTTTCTTCGGAGGAGGAAGTCGAAACTGCCGTTTCATCGTTTAACAATGCTGTGTTGGAAGGTCAAGCAATTCGTGTAAACAAGGCATAA

Protein sequence

MASISSVLSSTNFIHSSKKPIEIPQKSPKQFFKPTPFHRRQTLLQISAAKRPTRLFAVAEAAVAAQDSTSVAARKLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEKLNDTEVGGRTIKVNVTEKPLVNTVVDMSLLQAEESQFIDSPFKVYVGNLSSTVSTETLKNLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAVSSFNNAVLEGQAIRVNKA

Homology

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BLAST of Sed0018745 vs. NCBI nr
Match: XP_022991923.1 (30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 390.6 bits (1002), Expect = 1.0e-104
Identity = 214/258 (82.95%), Postives = 227/258 (87.98%), Query Frame = 0


Query: 1   MASISSVLSSTNFIHSSKKPIEIPQKSPKQFFKPTPFHRRQTL------LQISAAKRPTR 60
           MASISS+L+  N IHSS KP EIPQ    QF +P  FH R TL      LQ SA KR TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVAAQDSTSVAARKLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QD +SVAARKLY+GNIPRNV NEELTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNDTEVGGRTIKVNVTEKPLVNTVVDMSLLQAEESQFIDS 180
           RRFAFVTMKTVDDANA IEKLNDTEVGGRTIKVN+TEKPLVNT VDMSLLQA+ESQFIDS
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT-VDMSLLQADESQFIDS 180

Query: 181 PFKVYVGNLSSTVSTETLKNLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAV 240
           P+KVYVGN+SSTVSTETLKN F+EKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A+
Sbjct: 181 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240

Query: 241 SSFNNAVLEGQAIRVNKA 253
           SSFNNA+LEGQ IRVNKA
Sbjct: 241 SSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Sed0018745 vs. NCBI nr
Match: XP_022954329.1 (30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 390.2 bits (1001), Expect = 1.4e-104
Identity = 214/258 (82.95%), Postives = 227/258 (87.98%), Query Frame = 0


Query: 1   MASISSVLSSTNFIHSSKKPIEIPQKSPKQFFKPTPFHRRQTL------LQISAAKRPTR 60
           MASISS+L+  N IHSS KP EIPQ    QF +P  FH R TL      LQ SA KR TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVAAQDSTSVAARKLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QD +SVAARKLY+GNIPRNV NEELTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNDTEVGGRTIKVNVTEKPLVNTVVDMSLLQAEESQFIDS 180
           RRFAFVTMKTVDDANA IEKLNDTEVGGRTIKVN+TEKPLVNT VDMSLLQA+ESQFIDS
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT-VDMSLLQADESQFIDS 180

Query: 181 PFKVYVGNLSSTVSTETLKNLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAV 240
           P+KVYVGN+SSTVSTETLKN F+EKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A+
Sbjct: 181 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240

Query: 241 SSFNNAVLEGQAIRVNKA 253
           SSFNNA+LEGQ IRVNKA
Sbjct: 241 SSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Sed0018745 vs. NCBI nr
Match: XP_022954328.1 (30S ribosomal protein 2, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 390.2 bits (1001), Expect = 1.4e-104
Identity = 214/258 (82.95%), Postives = 227/258 (87.98%), Query Frame = 0


Query: 1   MASISSVLSSTNFIHSSKKPIEIPQKSPKQFFKPTPFHRRQTL------LQISAAKRPTR 60
           MASISS+L+  N IHSS KP EIPQ    QF +P  FH R TL      LQ SA KR TR
Sbjct: 23  MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 82

Query: 61  LFAVAEAAVAAQDSTSVAARKLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QD +SVAARKLY+GNIPRNV NEELTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 83  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 142

Query: 121 RRFAFVTMKTVDDANAAIEKLNDTEVGGRTIKVNVTEKPLVNTVVDMSLLQAEESQFIDS 180
           RRFAFVTMKTVDDANA IEKLNDTEVGGRTIKVN+TEKPLVNT VDMSLLQA+ESQFIDS
Sbjct: 143 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT-VDMSLLQADESQFIDS 202

Query: 181 PFKVYVGNLSSTVSTETLKNLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAV 240
           P+KVYVGN+SSTVSTETLKN F+EKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A+
Sbjct: 203 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 262

Query: 241 SSFNNAVLEGQAIRVNKA 253
           SSFNNA+LEGQ IRVNKA
Sbjct: 263 SSFNNALLEGQPIRVNKA 279

[Close]

BLAST of Sed0018745 vs. NCBI nr
Match: KAG6575671.1 (30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014222.1 30S ribosomal protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 389.0 bits (998), Expect = 3.0e-104
Identity = 213/258 (82.56%), Postives = 226/258 (87.60%), Query Frame = 0


Query: 1   MASISSVLSSTNFIHSSKKPIEIPQKSPKQFFKPTPFHRRQTL------LQISAAKRPTR 60
           MASISS+L+  N IHSS KP EIPQ    QF +P  FH R TL      LQ SA KR TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVAAQDSTSVAARKLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAE AV+ QD +SVAARKLY+GNIPRNV NEELTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEVAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNDTEVGGRTIKVNVTEKPLVNTVVDMSLLQAEESQFIDS 180
           RRFAFVTMKTVDDANA IEKLNDTEVGGRTIKVN+TEKPLVNT VDMSLLQA+ESQFIDS
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT-VDMSLLQADESQFIDS 180

Query: 181 PFKVYVGNLSSTVSTETLKNLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAV 240
           P+KVYVGN+SSTVSTETLKN F+EKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A+
Sbjct: 181 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240

Query: 241 SSFNNAVLEGQAIRVNKA 253
           SSFNNA+LEGQ IRVNKA
Sbjct: 241 SSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Sed0018745 vs. NCBI nr
Match: XP_023548333.1 (30S ribosomal protein 2, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 386.0 bits (990), Expect = 2.6e-103
Identity = 212/258 (82.17%), Postives = 226/258 (87.60%), Query Frame = 0


Query: 1   MASISSVLSSTNFIHSSKKPIEIPQKSPKQFFKPTPFHRRQTL------LQISAAKRPTR 60
           MASISS+L+  N I SS KP EIPQ    QF +P  FH R TL      LQ SA KR TR
Sbjct: 1   MASISSILTPANLIQSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRCTR 60

Query: 61  LFAVAEAAVAAQDSTSVAARKLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QD +SVAARKLY+GNIPRNV NEELTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNDTEVGGRTIKVNVTEKPLVNTVVDMSLLQAEESQFIDS 180
           RRFAFVTMKTVDDANA IEKLNDTEVGGRTIKVN+TEKPLVNT VDMSLLQA+ESQFIDS
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT-VDMSLLQADESQFIDS 180

Query: 181 PFKVYVGNLSSTVSTETLKNLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAV 240
           P+KVYVGN+SSTVST+TLKN F+EKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A+
Sbjct: 181 PYKVYVGNISSTVSTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240

Query: 241 SSFNNAVLEGQAIRVNKA 253
           SSFNNA+LEGQ IRVNKA
Sbjct: 241 SSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Sed0018745 vs. ExPASy Swiss-Prot
Match: P82277 (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 1.1e-69
Identity = 134/194 (69.07%), Postives = 163/194 (84.02%), Query Frame = 0


Query: 59  AEAAVAAQDSTSVAARKLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFA 118
           + ++ A+  S    AR+LYVGNIPRN+NN+EL  IVEEHGA+E AEVMYDKYSGRSRRF 
Sbjct: 69  SSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFG 128

Query: 119 FVTMKTVDDANAAIEKLNDTEVGGRTIKVNVTEKPLVNTVVDMSLLQAEESQFIDSPFKV 178
           FVTMKTV+DANA IEKLNDTE+GGR IKVN+TEKPL    +D++  QAE+SQF++SP+KV
Sbjct: 129 FVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEG--MDIATTQAEDSQFVESPYKV 188

Query: 179 YVGNLSSTVSTETLKNLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAVSSFN 238
           Y+GNL+ TV+ E LK+ F+EKGKVL AKV R PGTSKS+G+GFV+FSSEEEVE A+ + N
Sbjct: 189 YIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALN 248

Query: 239 NAVLEGQAIRVNKA 253
           N+VLEGQ IRVNKA
Sbjct: 249 NSVLEGQKIRVNKA 260

[Close]

BLAST of Sed0018745 vs. ExPASy Swiss-Prot
Match: Q8VYM4 (30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.1e-68
Identity = 132/193 (68.39%), Postives = 165/193 (85.49%), Query Frame = 0


Query: 60  EAAVAAQDSTSVAARKLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAF 119
           E   AA D +S AAR++Y+GNIPR V NE+LT++VEEHGAVEK +VMYDKYSGRSRRF F
Sbjct: 62  EEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGF 121

Query: 120 VTMKTVDDANAAIEKLNDTEVGGRTIKVNVTEKPLVNTVVDMSLLQAEESQFIDSPFKVY 179
            TMK+V+DANA +EKLN   V GR IKVN+TEKP+ ++  D+S+LQ+E+S F+DSP+KVY
Sbjct: 122 ATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASS-PDLSVLQSEDSAFVDSPYKVY 181

Query: 180 VGNLSSTVSTETLKNLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAVSSFNN 239
           VGNL+ TV+ E L+NLF+EKGKV+SAKVSRVPGTSKS+G+GFVTFSSEE+VE A+ + NN
Sbjct: 182 VGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNN 241

Query: 240 AVLEGQAIRVNKA 253
           ++LEGQ IRVNKA
Sbjct: 242 SLLEGQKIRVNKA 253

[Close]

BLAST of Sed0018745 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.6e-31
Identity = 76/187 (40.64%), Postives = 120/187 (64.17%), Query Frame = 0


Query: 67  DSTSVAARKLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVD 126
           +S SV   +LYVGN+P ++ + +L+ I  E G V   E++YD+ + RSR FAFVTM +V+
Sbjct: 107 ESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVE 166

Query: 127 DANAAIEKLNDTEVGGRTIKVNVTEKPLVNTVVDMSL-LQAEESQFIDSPFKVYVGNLSS 186
           +A  AI   + ++VGGRT+KVN  E P       MS  +++    F+DSP K+YV NLS 
Sbjct: 167 EAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSW 226

Query: 187 TVSTETLKNLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAVSSFNNAVLEGQ 246
            ++++ L++ FA++   +SAKV     + +S G+GF+TFSS E + +A+ + N   LEG+
Sbjct: 227 ALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGR 286

Query: 247 AIRVNKA 253
            +R+N A
Sbjct: 287 PLRLNVA 293

[Close]

BLAST of Sed0018745 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.1e-31
Identity = 70/179 (39.11%), Postives = 115/179 (64.25%), Query Frame = 0


Query: 75  KLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEK 134
           +LYVGN+P  + + EL++I  E G V   +++YDK + RSR F FVTM ++++A  A++ 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176

Query: 135 LNDTEVGGRTIKVNVTEKPL-VNTVVDMSLLQAEESQFIDSPFKVYVGNLSSTVSTETLK 194
            N +++GGRT+KVN  E P      V  + ++     ++DSP KVY GNL   ++++ LK
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236

Query: 195 NLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAVSSFNNAVLEGQAIRVNKA 253
           + F ++  VL AKV     T +S G+GF++F S E V++A+++ N   +EG+A+R+N A
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295

[Close]

BLAST of Sed0018745 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.8e-28
Identity = 77/178 (43.26%), Postives = 110/178 (61.80%), Query Frame = 0


Query: 75  KLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEK 134
           KL+VGN+P +V++E+L  I +  G VE AEV+Y++ + RSR F FVTM TV++A  A+E 
Sbjct: 56  KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115

Query: 135 LNDTEVGGRTIKVNVTEKPLVNTVVDMSLLQAEESQFIDSPFKVYVGNLSSTVSTETLKN 194
           LN  ++ GR + VN             S  +A    F +   +VYVGNL   V T  L+ 
Sbjct: 116 LNGYDMDGRQLTVN-------KAAPRGSPERAPRGDF-EPSCRVYVGNLPWDVDTSRLEQ 175

Query: 195 LFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAVSSFNNAVLEGQAIRVNKA 253
           LF+E GKV+SA+V     T +S G+GFVT SSE EV  A+++ +   L+G+A+RVN A
Sbjct: 176 LFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225

[Close]

BLAST of Sed0018745 vs. ExPASy TrEMBL
Match: A0A6J1JXN0 (30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488418 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 5.0e-105
Identity = 214/258 (82.95%), Postives = 227/258 (87.98%), Query Frame = 0


Query: 1   MASISSVLSSTNFIHSSKKPIEIPQKSPKQFFKPTPFHRRQTL------LQISAAKRPTR 60
           MASISS+L+  N IHSS KP EIPQ    QF +P  FH R TL      LQ SA KR TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVAAQDSTSVAARKLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QD +SVAARKLY+GNIPRNV NEELTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNDTEVGGRTIKVNVTEKPLVNTVVDMSLLQAEESQFIDS 180
           RRFAFVTMKTVDDANA IEKLNDTEVGGRTIKVN+TEKPLVNT VDMSLLQA+ESQFIDS
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT-VDMSLLQADESQFIDS 180

Query: 181 PFKVYVGNLSSTVSTETLKNLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAV 240
           P+KVYVGN+SSTVSTETLKN F+EKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A+
Sbjct: 181 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240

Query: 241 SSFNNAVLEGQAIRVNKA 253
           SSFNNA+LEGQ IRVNKA
Sbjct: 241 SSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Sed0018745 vs. ExPASy TrEMBL
Match: A0A6J1GSN8 (30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 6.6e-105
Identity = 214/258 (82.95%), Postives = 227/258 (87.98%), Query Frame = 0


Query: 1   MASISSVLSSTNFIHSSKKPIEIPQKSPKQFFKPTPFHRRQTL------LQISAAKRPTR 60
           MASISS+L+  N IHSS KP EIPQ    QF +P  FH R TL      LQ SA KR TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVAAQDSTSVAARKLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QD +SVAARKLY+GNIPRNV NEELTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNDTEVGGRTIKVNVTEKPLVNTVVDMSLLQAEESQFIDS 180
           RRFAFVTMKTVDDANA IEKLNDTEVGGRTIKVN+TEKPLVNT VDMSLLQA+ESQFIDS
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT-VDMSLLQADESQFIDS 180

Query: 181 PFKVYVGNLSSTVSTETLKNLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAV 240
           P+KVYVGN+SSTVSTETLKN F+EKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A+
Sbjct: 181 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240

Query: 241 SSFNNAVLEGQAIRVNKA 253
           SSFNNA+LEGQ IRVNKA
Sbjct: 241 SSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Sed0018745 vs. ExPASy TrEMBL
Match: A0A6J1GQT6 (30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 6.6e-105
Identity = 214/258 (82.95%), Postives = 227/258 (87.98%), Query Frame = 0


Query: 1   MASISSVLSSTNFIHSSKKPIEIPQKSPKQFFKPTPFHRRQTL------LQISAAKRPTR 60
           MASISS+L+  N IHSS KP EIPQ    QF +P  FH R TL      LQ SA KR TR
Sbjct: 23  MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 82

Query: 61  LFAVAEAAVAAQDSTSVAARKLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ QD +SVAARKLY+GNIPRNV NEELTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 83  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 142

Query: 121 RRFAFVTMKTVDDANAAIEKLNDTEVGGRTIKVNVTEKPLVNTVVDMSLLQAEESQFIDS 180
           RRFAFVTMKTVDDANA IEKLNDTEVGGRTIKVN+TEKPLVNT VDMSLLQA+ESQFIDS
Sbjct: 143 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNT-VDMSLLQADESQFIDS 202

Query: 181 PFKVYVGNLSSTVSTETLKNLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAV 240
           P+KVYVGN+SSTVSTETLKN F+EKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A+
Sbjct: 203 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 262

Query: 241 SSFNNAVLEGQAIRVNKA 253
           SSFNNA+LEGQ IRVNKA
Sbjct: 263 SSFNNALLEGQPIRVNKA 279

[Close]

BLAST of Sed0018745 vs. ExPASy TrEMBL
Match: A0A6J1DHV7 (30S ribosomal protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021229 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 8.9e-102
Identity = 207/259 (79.92%), Postives = 225/259 (86.87%), Query Frame = 0


Query: 1   MASISSVLSSTNFIHSSKKPIEIPQKSPKQFFKPTPFHRR------QTLLQISAAKRPTR 60
           MAS+SS+LS  N IHSS KP E P K   QF +P  FHRR       ++LQ SAAK   R
Sbjct: 1   MASLSSILSPPNLIHSSTKPTETPHKLSNQFLRPISFHRRPPLLRLSSVLQTSAAKHTIR 60

Query: 61  LFAVAEAAVAAQDSTSVAARKLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV AQD +S AAR+LY+GNIPRNV+NE+LTRIVEEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVTAQDPSSAAARRLYIGNIPRNVDNEQLTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVDDANAAIEKLNDTEVGGRTIKVNVTEKPLVNTV-VDMSLLQAEESQFID 180
           RRFAFVTMKTVDDANA IEKLN+TEV GRTIKVN+TEKPLV T  VD+SLLQAEESQFID
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNETEVEGRTIKVNITEKPLVTTTSVDLSLLQAEESQFID 180

Query: 181 SPFKVYVGNLSSTVSTETLKNLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240
           SP+KVYVGN+SSTVSTETLK LF+EKG VLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA
Sbjct: 181 SPYKVYVGNISSTVSTETLKKLFSEKGNVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETA 240

Query: 241 VSSFNNAVLEGQAIRVNKA 253
           +SSFNNA+LEGQAIRVNKA
Sbjct: 241 ISSFNNALLEGQAIRVNKA 259

[Close]

BLAST of Sed0018745 vs. ExPASy TrEMBL
Match: A0A5A7UYL6 (30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001110 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.9e-100
Identity = 205/254 (80.71%), Postives = 226/254 (88.98%), Query Frame = 0


Query: 1   MASISSVLSSTNFIHSSKKPIEIPQKSPKQFFKPTPFHRRQTLLQIS--AAKRPTRLFAV 60
           MASISS+L+ TN IH+SKKP EI Q    QF +P  FH    LL+IS  AA+ PTRLFAV
Sbjct: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPVAARPPTRLFAV 60

Query: 61  AEAAVAAQDSTSVAARKLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFA 120
           AEA  A Q ++SVA RKLY+GNIPRNVNNEELTRIV+EHGAVEKAEVMYDKYSGRSRRFA
Sbjct: 61  AEA--ATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFA 120

Query: 121 FVTMKTVDDANAAIEKLNDTEVGGRTIKVNVTEKPLVNTVVDMSLLQAEESQFIDSPFKV 180
           FVTMKTV+DANAAIEKLN+TEVGGR IKVN+TEKP+VNT VD+S+LQAEESQFIDSP+KV
Sbjct: 121 FVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNT-VDLSILQAEESQFIDSPYKV 180

Query: 181 YVGNLSSTVSTETLKNLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAVSSFN 240
           YVGN+SSTVSTETLKN F+EKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVE A+SSFN
Sbjct: 181 YVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFN 240

Query: 241 NAVLEGQAIRVNKA 253
           NA+LEGQ IRVNKA
Sbjct: 241 NALLEGQPIRVNKA 251

[Close]

BLAST of Sed0018745 vs. TAIR 10
Match: AT3G52150.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 260.4 bits (664), Expect = 1.5e-69
Identity = 132/193 (68.39%), Postives = 165/193 (85.49%), Query Frame = 0


Query: 60  EAAVAAQDSTSVAARKLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAF 119
           E   AA D +S AAR++Y+GNIPR V NE+LT++VEEHGAVEK +VMYDKYSGRSRRF F
Sbjct: 62  EEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGF 121

Query: 120 VTMKTVDDANAAIEKLNDTEVGGRTIKVNVTEKPLVNTVVDMSLLQAEESQFIDSPFKVY 179
            TMK+V+DANA +EKLN   V GR IKVN+TEKP+ ++  D+S+LQ+E+S F+DSP+KVY
Sbjct: 122 ATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASS-PDLSVLQSEDSAFVDSPYKVY 181

Query: 180 VGNLSSTVSTETLKNLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAVSSFNN 239
           VGNL+ TV+ E L+NLF+EKGKV+SAKVSRVPGTSKS+G+GFVTFSSEE+VE A+ + NN
Sbjct: 182 VGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNN 241

Query: 240 AVLEGQAIRVNKA 253
           ++LEGQ IRVNKA
Sbjct: 242 SLLEGQKIRVNKA 253

[Close]

BLAST of Sed0018745 vs. TAIR 10
Match: AT3G52150.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 260.4 bits (664), Expect = 1.5e-69
Identity = 132/193 (68.39%), Postives = 165/193 (85.49%), Query Frame = 0


Query: 60  EAAVAAQDSTSVAARKLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAF 119
           E   AA D +S AAR++Y+GNIPR V NE+LT++VEEHGAVEK +VMYDKYSGRSRRF F
Sbjct: 62  EEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGF 121

Query: 120 VTMKTVDDANAAIEKLNDTEVGGRTIKVNVTEKPLVNTVVDMSLLQAEESQFIDSPFKVY 179
            TMK+V+DANA +EKLN   V GR IKVN+TEKP+ ++  D+S+LQ+E+S F+DSP+KVY
Sbjct: 122 ATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASS-PDLSVLQSEDSAFVDSPYKVY 181

Query: 180 VGNLSSTVSTETLKNLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAVSSFNN 239
           VGNL+ TV+ E L+NLF+EKGKV+SAKVSRVPGTSKS+G+GFVTFSSEE+VE A+ + NN
Sbjct: 182 VGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNN 241

Query: 240 AVLEGQAIRVNKA 253
           ++LEGQ IRVNKA
Sbjct: 242 SLLEGQKIRVNKA 253

[Close]

BLAST of Sed0018745 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 136.3 bits (342), Expect = 3.3e-32
Identity = 81/193 (41.97%), Postives = 118/193 (61.14%), Query Frame = 0


Query: 60  EAAVAAQDSTSVAARKLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAF 119
           + A A  D  +    KLY GN+P NV++  L +I+++    E  EV+Y++ +G+SR FAF
Sbjct: 71  DGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAF 130

Query: 120 VTMKTVDDANAAIEKLNDTEVGGRTIKVNVTEKPLVNTVVDMSLLQAEESQFIDSPFKVY 179
           VTM  V+D N  I+ L+ TE  GR +KVN  +KP  N          +E  + ++  K++
Sbjct: 131 VTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPN----------KEPLYPETEHKLF 190

Query: 180 VGNLSSTVSTETLKNLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAVSSFNN 239
           VGNLS TV++E+L   F E G V+ A+V     T +S GYGFV +SS+ E+ETA+ S + 
Sbjct: 191 VGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDG 250

Query: 240 AVLEGQAIRVNKA 253
             LEG+AIRVN A
Sbjct: 251 FELEGRAIRVNLA 253

[Close]

BLAST of Sed0018745 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 136.0 bits (341), Expect = 4.3e-32
Identity = 70/179 (39.11%), Postives = 115/179 (64.25%), Query Frame = 0


Query: 75  KLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEK 134
           +LYVGN+P  + + EL++I  E G V   +++YDK + RSR F FVTM ++++A  A++ 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176

Query: 135 LNDTEVGGRTIKVNVTEKPL-VNTVVDMSLLQAEESQFIDSPFKVYVGNLSSTVSTETLK 194
            N +++GGRT+KVN  E P      V  + ++     ++DSP KVY GNL   ++++ LK
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236

Query: 195 NLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAVSSFNNAVLEGQAIRVNKA 253
           + F ++  VL AKV     T +S G+GF++F S E V++A+++ N   +EG+A+R+N A
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295

[Close]

BLAST of Sed0018745 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 125.2 bits (313), Expect = 7.6e-29
Identity = 71/178 (39.89%), Postives = 108/178 (60.67%), Query Frame = 0


Query: 75  KLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEK 134
           KL+VGN+P +V+++ L  + E+ G VE +EV+Y++ + +SR F FVTM TV++A  A+EK
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173

Query: 135 LNDTEVGGRTIKVNVTEKPLVNTVVDMSLLQAEESQFIDSPFKVYVGNLSSTVSTETLKN 194
            N  EV GR +         VN           + +  D+ F++YVGNL   V +  L+ 
Sbjct: 174 FNSFEVNGRRL--------TVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLER 233

Query: 195 LFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAVSSFNNAVLEGQAIRVNKA 253
           LF+E GKV+ A+V     T +S G+GFV  S+E EV  A+++ +   LEG+AI+VN A
Sbjct: 234 LFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283

The following BLAST results are available for this feature:

BLAST of Sed0018745 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991923.1	1.0e-104	82.95	30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima]	[more]
XP_022954329.1	1.4e-104	82.95	30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata]	[more]
XP_022954328.1	1.4e-104	82.95	30S ribosomal protein 2, chloroplastic-like isoform X1 [Cucurbita moschata]	[more]
KAG6575671.1	3.0e-104	82.56	30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_023548333.1	2.6e-103	82.17	30S ribosomal protein 2, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0018745 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82277	1.1e-69	69.07	30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=...	[more]
Q8VYM4	2.1e-68	68.39	30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 ...	[more]
P19684	4.6e-31	40.64	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q39061	6.1e-31	39.11	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P28644	4.8e-28	43.26	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]

BLAST of Sed0018745 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JXN0	5.0e-105	82.95	30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GSN8	6.6e-105	82.95	30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=...	[more]
A0A6J1GQT6	6.6e-105	82.95	30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A6J1DHV7	8.9e-102	79.92	30S ribosomal protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A5A7UYL6	2.9e-100	80.71	30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Sed0018745 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52150.1	1.5e-69	68.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52150.2	1.5e-69	68.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G60000.1	3.3e-32	41.97	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	4.3e-32	39.11	chloroplast RNA-binding protein 33	[more]
AT5G50250.1	7.6e-29	39.89	chloroplast RNA-binding protein 31B	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 177..250 e-value: 1.2 score: 13.5 coord: 75..148 e-value: 0.65 score: 16.1
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 75..148 e-value: 1.8E-26 score: 103.9 coord: 177..250 e-value: 1.2E-21 score: 87.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 178..248 e-value: 3.2E-17 score: 62.1 coord: 76..146 e-value: 1.1E-19 score: 70.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 74..152 score: 18.683224
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 176..252 score: 18.154507
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 163..252 e-value: 1.1E-22 score: 82.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 40..154 e-value: 6.1E-27 score: 96.5
None	No IPR available	PANTHER	PTHR48025:SF4	30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC	coord: 1..252
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..252
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 75..152 e-value: 7.536E-36 score: 120.411
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 170..252
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 68..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018745.1	Sed0018745.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding