Sed0018745 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGAAGGCCACGTGCGAGCAGCACGTGTGTAGCTCAATCTTCTTCTCGACCGGATAAACCTCAACCTCGCCCAAGGCTCTGCAATTTTTCTTTCTCACAGTCGTAACCAAAACCTCCAGAGACCAAAAATGGCTTCAATCTCATCAGTGTTATCTTCAACAAATTTCATCCACAGTTCCAAAAAACCCATTGAAATCCCACAAAAATCCCCCAAACAATTTTTTAAACCAACCCCATTTCACCGCCGTCAAACCCTCCTTCAAATCTCCGCCGCAAAACGGCCGACGAGACTTTTCGCCGTCGCAGAAGCGGCGGTTGCCGCCCAGGATTCCACCTCGGTGGCGGCGAGGAAACTGTACGTTGGGAATATACCTAGAAATGTGAATAATGAGGAACTTACTCGGATTGTTGAAGAACATGGGGCTGTGGAGAAGGCTGAGGTGCGTAATTTATCAATTGATTTTTTCTTTTTGGGATTTTGAATTTTGTTGGGGTTTTCTGTATGTTAGGATTACATGTCGTAAGAGTGAGACCTCGTAGTAATATAGATAAGAAAGGTGGACTACTAATCTCGTTTTTGAGATGAACATCTAAACGGTTATTCGGTCCAATAAAAAATGAAAGGAAAACTTGCAAGAAAATAATTACAAATTTAATCCCTTTTAAAAATAGCAATTATAGTCATCAGTAATAATACTTTATTAATGTCGAATGACGCAATGATTTCATTATTTGGTTGTAAATCAGTTCAATACCAGCATCACAGGTTCGATCTTGAGTATCGGTACGGTACATGTTCCCCCTCCCCCGATATGTACTAAAAAAAAAAACCTTTATTAACATATTAGTATTAATGACTATAGAAGCAAATTCTTTAAAATTTGCGCATATTTATAATTATTTTGTGGGAAGAGCAGACTTAGTACAATTCCCAAAATGAAATTAGGCACTGTATTGAGGGGCATGTTAGGATCTCACATCGGAAAGAAGATCTGTTAGTATATATATTAGAAAGATGGATTACTCCTCTCATCACTAATTAGTTTTGAGATGGACGTATATGTTCTTAGTTTGTCTTTTGAACGATTCTTGAGTTTACTTGGTTGTAAGTTCATCAAAACTGCCGGATGTAGCCTGATTTTGGCCTAAATTTGTCGACCATTTACTTCAAAATGTATTAATTTGGAGAAGGTTATCCAAATCATGATGGAAAAAGTTTGAACCCTTCTTTATACTTTTAGTTTTGAACAAGATTTCGAGGTTGGATTTGGATCTTGTCATCCATGAACCGATCACATAAGCTGTATCCATTGCTGTCGAGATTAGGGATTTGGATTTCATGGCATATGTGTTTATTCCCATGATTAAGAGGTCATTAGTTTAAATCTCCCTCATCTAATTGTAGTTGAACTTAAAAACAGATATCTTATTCAGAAGCCACTGATTAACTATCATGGAGTCGTTTAGTAGTCAAGAGGATTTTAAGTAAGTAAGAGGTTGGTATCCACCTACCTAAGAATGAATTTCCTTGAACCAACAAGGAATACTCATCCTTACATGAATCTATTATCTATTTGGCCCTGTATTGGTGTCACTCCAGCCCTGTAGCTATAATTTATCTACTTTAATTACACAATGGCATCACTTCCTTTAATGTTTTGATATGACTGTATTTTTCATATATCAATGAAAGTTTTTGTTTCCTATAAAAAAAAGAATGAATTTCCTTGACATTCAAATGTTGTAGGGTAAGACCATATATTTCGTGACAAAAGTCGAGGTGTGTGTAAACTAGTCTTAATGAAGAGAATAAAAAATTGTTATAAGGGTCCTCAAGGGGTGGCGCAATGGTCAAAGGCTTGAGTTTTGAAGGTGTGCTCCCCTCAAGGTCTCAGGTTCGATGCTCATATGTGACATTAATTTGTAGACACCTCCAGTGTCTCCGTTCCTTCGATGTCTCTTGATGCCTGGCCTAGGGACGGACGTGGTTATTATGGGTATAGTGGAGCGAAGCTACGATTTCTCAATTTTAAGGAAAAAAAAAGGTTATAAGAGAATGAAAATTGATTATGAGGAGAATATAAAGTAGTTATGGAGAAAATAAAAGGTGAGTATGGAGAAATGAGATTATGAGGAAAGATTATTGGTGGCTCTTACATGAGTAACAAAACGATTTCTCCATGTTCATTCTCATCCTTCTTGCCCCGAACACCCCCTTAGTTCTTGCTGCTTTCGGTAGTTTATCACTTCAGGTTTGTTGCATATGTATGAGAGTGTCTAACTGAGTACCTAGCTAGCTCTTTAGTCTGCTTATTGATATTTGACTCGAGTCTTCTTGGTGATAAATTCAAAGGGAAACTGATTTCAGCACTTGAAAGTTAAATGTCTTAGGCACTTTATCATATTTTTTAAAACCGTAAGAATCTGGGTCATTGTACACGCACCTCGATTACTATTACAATGCAATTGTACCATAGACATTGTATCATTTGGTTTACCGTCTTTGGACATGAATCTGACGCATGGAGATATTATTGATCTTAACTGCAGCTCTTCATTGCTAGATAAGTTACAAGACAATCTGTAATATTAGAGGATATCAATATTCAATTCTTTTACAATGTAGCCAGTTTCCCTTAAAAGTCAGTTTTTTTTCTCGGCAAGGCCATTGTACAAAACCGTCTCTAAAATCAAGTAGTTGTGACTGGCCTAGAAACGGACGTGGTTACCCCGAGTATACTGGAGGGAAGCTCCGATTTCCTAATTTCAAAAAAAAAGAGAAGAAGTAATTATGACATTTTTTGAAACCGAAAAATCGTACATTCGCTCCACTATAGTCGGAGTAACCACGCCGTTCCTAAGCCAGACATTCACGAGAGGTGTCTACAAATTAATGTAACAAATGAGTCTCGAACCTGAGACCTTAAGGGGAGCATACTTTGAAAAATTCAAGCCTTCGACCACCGCACTATCCCTTGTGGACAGCTGTTACATTTTTTATTGATAGATTATTCTTGCAATCAATTGACTTGAAGAATTCTAGCATAGTACCCTTGTTCTTAATGTTGACTTGCTAACTGTTGGTATTGGCTTTAAAACTCCAATTTTGTTCCATTTTCAGGTCATGTATGACAAATACTCTGGTAGAAGCCGCAGATTTGCCTTTGTTACTATGAAAACAGTTGACGATGCAAATGCAGCAATTGAGAAACTGAATGACACGGTAAGTTAATACTAATATAATACCAATAAAATGCAACTAAATTTGAAAAATAAACAAGAAGAACAAGACAATTGTTCCTTACCATTCACTAGATTCTACATAGATAATTTGTGCTGACGATATCAGTCTAATGACAGGAAGTTGGAGGGCGTACGATTAAAGTCAACGTAACCGAAAAGCCTTTGGTAAATACAGTAGTTGATATGTCACTTCTTCAGGCAGAGGAATCCCAATTCATCGACAGTCCCTTCAAAGTCTATGTAGGAAATCTTTCGAGTACAGTTTCTACTGAAACACTCAAAAACTTATTCGCCGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACCTCAAAATCAAGTGGCTATGGTTTTGTTACCTTTTCTTCGGAGGAGGAAGTCGAAACTGCCGTTTCATCGTTTAACAATGCTGTGAGTAATTTGCTTCCATTCTCTATCTTATCGAATGTTGTGATGCATATACCGATTTATGCAGACTCTATCTCATTTTCTGGTCCATTTCTCACAATGTCCCTTGGTTTGGTTTCATGCATTTGCAATATCTTTACTCTTGCTTGGTAGAGTTAGACATTGTCTTGTTGAGCATTCCTTGTTTCATTTTGAGTGTCCCTAAACCAGCGTTTGGGATAAGGAGGATGAGAATGATTATGAGAAAATAAAGATAAGGAAGAGAATATGAGGAAGAATGATTATCTATTTTTAGGGTGAAAAGAATGATTATGGACGAACCGGTACCTGTATCTGAGGTGCAGAGAATGGTTATGGAGAGAATTATAACTTATGTTTGGGGTGTAGTCCAAAGAATGGTTACAGGGCAACAAAATAGTGAGTATAGAGAGAATTAAAAGTGGTTTGTTTGGGAGAATGAGATTGTGAGAAAGTGAATAATGATTATGGGGGAATGATTCTCGGTGATTCAAACGTGGATAAGAGAATTGTTCTCTCCTAATCATTATTATTCTCTTTGCCTCAAACACCCCCTAAACAAGTGCATATAGAGTAACATTTTTTATCACCAACTTCTAAGAAACATTTCTTGAACTAGTTGACGGGGATGCCAACTTGAACATCTTTCGTCAGTTATCGATATTACTAACGGTTGGACGAGCTATGTTTTCTAATACGATTGACATATTACCCCGAAAACTCTCATGTACATTTTTTTGTTTCCGAATGGTTGAAAGAATCTTGTATCTGATATGTTTTTCATTGATGCAGGTGTTGGAAGGTCAAGCAATTCGTGTAAACAAGGCATAATTTTGTAGGATTTTTGTAACACAAATGTACGAAAATTTCACTTTTGCCTCTTGGCATGAAATTGATGAACAGAAGAGTGCAGTTTTTTTTCTCTCAATTTCTCTGTGGTGACCATTGATGCATAATCTTGTTTATTTACTGTTTAAGCATCCTGTTACTCTGATGAGAATGAAAATGCAAATCTTTGATTACATTTCAAACAAAAAC GGAAGGCCACGTGCGAGCAGCACGTGTGTAGCTCAATCTTCTTCTCGACCGGATAAACCTCAACCTCGCCCAAGGCTCTGCAATTTTTCTTTCTCACAGTCGTAACCAAAACCTCCAGAGACCAAAAATGGCTTCAATCTCATCAGTGTTATCTTCAACAAATTTCATCCACAGTTCCAAAAAACCCATTGAAATCCCACAAAAATCCCCCAAACAATTTTTTAAACCAACCCCATTTCACCGCCGTCAAACCCTCCTTCAAATCTCCGCCGCAAAACGGCCGACGAGACTTTTCGCCGTCGCAGAAGCGGCGGTTGCCGCCCAGGATTCCACCTCGGTGGCGGCGAGGAAACTGTACGTTGGGAATATACCTAGAAATGTGAATAATGAGGAACTTACTCGGATTGTTGAAGAACATGGGGCTGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCTGGTAGAAGCCGCAGATTTGCCTTTGTTACTATGAAAACAGTTGACGATGCAAATGCAGCAATTGAGAAACTGAATGACACGGAAGTTGGAGGGCGTACGATTAAAGTCAACGTAACCGAAAAGCCTTTGGTAAATACAGTAGTTGATATGTCACTTCTTCAGGCAGAGGAATCCCAATTCATCGACAGTCCCTTCAAAGTCTATGTAGGAAATCTTTCGAGTACAGTTTCTACTGAAACACTCAAAAACTTATTCGCCGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACCTCAAAATCAAGTGGCTATGGTTTTGTTACCTTTTCTTCGGAGGAGGAAGTCGAAACTGCCGTTTCATCGTTTAACAATGCTGTGTTGGAAGGTCAAGCAATTCGTGTAAACAAGGCATAATTTTGTAGGATTTTTGTAACACAAATGTACGAAAATTTCACTTTTGCCTCTTGGCATGAAATTGATGAACAGAAGAGTGCAGTTTTTTTTCTCTCAATTTCTCTGTGGTGACCATTGATGCATAATCTTGTTTATTTACTGTTTAAGCATCCTGTTACTCTGATGAGAATGAAAATGCAAATCTTTGATTACATTTCAAACAAAAAC ATGGCTTCAATCTCATCAGTGTTATCTTCAACAAATTTCATCCACAGTTCCAAAAAACCCATTGAAATCCCACAAAAATCCCCCAAACAATTTTTTAAACCAACCCCATTTCACCGCCGTCAAACCCTCCTTCAAATCTCCGCCGCAAAACGGCCGACGAGACTTTTCGCCGTCGCAGAAGCGGCGGTTGCCGCCCAGGATTCCACCTCGGTGGCGGCGAGGAAACTGTACGTTGGGAATATACCTAGAAATGTGAATAATGAGGAACTTACTCGGATTGTTGAAGAACATGGGGCTGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCTGGTAGAAGCCGCAGATTTGCCTTTGTTACTATGAAAACAGTTGACGATGCAAATGCAGCAATTGAGAAACTGAATGACACGGAAGTTGGAGGGCGTACGATTAAAGTCAACGTAACCGAAAAGCCTTTGGTAAATACAGTAGTTGATATGTCACTTCTTCAGGCAGAGGAATCCCAATTCATCGACAGTCCCTTCAAAGTCTATGTAGGAAATCTTTCGAGTACAGTTTCTACTGAAACACTCAAAAACTTATTCGCCGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACCTCAAAATCAAGTGGCTATGGTTTTGTTACCTTTTCTTCGGAGGAGGAAGTCGAAACTGCCGTTTCATCGTTTAACAATGCTGTGTTGGAAGGTCAAGCAATTCGTGTAAACAAGGCATAA MASISSVLSSTNFIHSSKKPIEIPQKSPKQFFKPTPFHRRQTLLQISAAKRPTRLFAVAEAAVAAQDSTSVAARKLYVGNIPRNVNNEELTRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEKLNDTEVGGRTIKVNVTEKPLVNTVVDMSLLQAEESQFIDSPFKVYVGNLSSTVSTETLKNLFAEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVETAVSSFNNAVLEGQAIRVNKA Homology
BLAST of Sed0018745 vs. NCBI nr
Match: XP_022991923.1 (30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 390.6 bits (1002), Expect = 1.0e-104 Identity = 214/258 (82.95%), Postives = 227/258 (87.98%), Query Frame = 0
BLAST of Sed0018745 vs. NCBI nr
Match: XP_022954329.1 (30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 390.2 bits (1001), Expect = 1.4e-104 Identity = 214/258 (82.95%), Postives = 227/258 (87.98%), Query Frame = 0
BLAST of Sed0018745 vs. NCBI nr
Match: XP_022954328.1 (30S ribosomal protein 2, chloroplastic-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 390.2 bits (1001), Expect = 1.4e-104 Identity = 214/258 (82.95%), Postives = 227/258 (87.98%), Query Frame = 0
BLAST of Sed0018745 vs. NCBI nr
Match: KAG6575671.1 (30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014222.1 30S ribosomal protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 389.0 bits (998), Expect = 3.0e-104 Identity = 213/258 (82.56%), Postives = 226/258 (87.60%), Query Frame = 0
BLAST of Sed0018745 vs. NCBI nr
Match: XP_023548333.1 (30S ribosomal protein 2, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 386.0 bits (990), Expect = 2.6e-103 Identity = 212/258 (82.17%), Postives = 226/258 (87.60%), Query Frame = 0
BLAST of Sed0018745 vs. ExPASy Swiss-Prot
Match: P82277 (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=1 SV=1) HSP 1 Score: 264.6 bits (675), Expect = 1.1e-69 Identity = 134/194 (69.07%), Postives = 163/194 (84.02%), Query Frame = 0
BLAST of Sed0018745 vs. ExPASy Swiss-Prot
Match: Q8VYM4 (30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 PE=2 SV=1) HSP 1 Score: 260.4 bits (664), Expect = 2.1e-68 Identity = 132/193 (68.39%), Postives = 165/193 (85.49%), Query Frame = 0
BLAST of Sed0018745 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 4.6e-31 Identity = 76/187 (40.64%), Postives = 120/187 (64.17%), Query Frame = 0
BLAST of Sed0018745 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 6.1e-31 Identity = 70/179 (39.11%), Postives = 115/179 (64.25%), Query Frame = 0
BLAST of Sed0018745 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 4.8e-28 Identity = 77/178 (43.26%), Postives = 110/178 (61.80%), Query Frame = 0
BLAST of Sed0018745 vs. ExPASy TrEMBL
Match: A0A6J1JXN0 (30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488418 PE=4 SV=1) HSP 1 Score: 390.6 bits (1002), Expect = 5.0e-105 Identity = 214/258 (82.95%), Postives = 227/258 (87.98%), Query Frame = 0
BLAST of Sed0018745 vs. ExPASy TrEMBL
Match: A0A6J1GSN8 (30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1) HSP 1 Score: 390.2 bits (1001), Expect = 6.6e-105 Identity = 214/258 (82.95%), Postives = 227/258 (87.98%), Query Frame = 0
BLAST of Sed0018745 vs. ExPASy TrEMBL
Match: A0A6J1GQT6 (30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1) HSP 1 Score: 390.2 bits (1001), Expect = 6.6e-105 Identity = 214/258 (82.95%), Postives = 227/258 (87.98%), Query Frame = 0
BLAST of Sed0018745 vs. ExPASy TrEMBL
Match: A0A6J1DHV7 (30S ribosomal protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021229 PE=4 SV=1) HSP 1 Score: 379.8 bits (974), Expect = 8.9e-102 Identity = 207/259 (79.92%), Postives = 225/259 (86.87%), Query Frame = 0
BLAST of Sed0018745 vs. ExPASy TrEMBL
Match: A0A5A7UYL6 (30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001110 PE=4 SV=1) HSP 1 Score: 374.8 bits (961), Expect = 2.9e-100 Identity = 205/254 (80.71%), Postives = 226/254 (88.98%), Query Frame = 0
BLAST of Sed0018745 vs. TAIR 10
Match: AT3G52150.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 260.4 bits (664), Expect = 1.5e-69 Identity = 132/193 (68.39%), Postives = 165/193 (85.49%), Query Frame = 0
BLAST of Sed0018745 vs. TAIR 10
Match: AT3G52150.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 260.4 bits (664), Expect = 1.5e-69 Identity = 132/193 (68.39%), Postives = 165/193 (85.49%), Query Frame = 0
BLAST of Sed0018745 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 136.3 bits (342), Expect = 3.3e-32 Identity = 81/193 (41.97%), Postives = 118/193 (61.14%), Query Frame = 0
BLAST of Sed0018745 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 ) HSP 1 Score: 136.0 bits (341), Expect = 4.3e-32 Identity = 70/179 (39.11%), Postives = 115/179 (64.25%), Query Frame = 0
BLAST of Sed0018745 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B ) HSP 1 Score: 125.2 bits (313), Expect = 7.6e-29 Identity = 71/178 (39.89%), Postives = 108/178 (60.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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