Sed0018605 (gene) Chayote v1

Overview


Name	Sed0018605
Type	gene
Organism	Sechium edule (Chayote v1)
Description	calmodulin
Location	LG02: 48541584 .. 48542464 (-)
RNA-Seq Expression	Sed0018605
Synteny	Sed0018605

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTCATTTCTCCAAAACTAATCTCTCTCATCCGCCGTCGATTTCACTTCTCCAATTCTCCGCCATGTGCCCCTCCGGTACAGCCGCCGTCCGCTCCGAAATCGCCTCCGACACCGCCGATTTCCGCCAGGCATTCGAGGCGCTCGACGCCGACCGAGACGGAAAGATCAGCCGCGACGATCTCCGCAAGTTCTACAGCGCCGACGCCGACGAAGACGCGATCGGCTCCATGATGGCCGCCGCCGACCTGAATCGCGACGGTTTCGTCGAGTATGACGAGTTCGAGCGCGTGTTGTCCGGCGGAAGGAGGAGATCAACGGGGATCATGGAGGAGGTTTTCAAGGCGATGGATAAGGACGGAGACGGACGGCTGAGTCACGCCGATTTGAAGAGCTACATGCATTTGGCCGGATTTTCGATCTCCGACGAAGACGTTACGGCGATGATCAGATTCGGCGGCGGAGATGAATCGGACGGCGTTAGTTACGACGGATTGCTGAAGATTCTGGCCGTTGATAACGTGTATTAGGTTTTGTTAGTCTCATTTTCGCTGCAGATCTGAAATTTTTTTCCAGGAAAGCGGTTATGAAATGCGAAAGCGCTTTCTCTTTCAAAACAACGCTTTAAACGTGTCTACCAGTTATTGGAGGTATTTAAGTTTATTTAATTTAATAAATTTTAGTGTTCTAAGGGAATCGAACGTGAAAATGTGGCTGGCTTTTTTGTTTTTTTTACTTTGTTTTGAATGGCGATTCGATTCGAAAAGTACGGTCTGATCATTTTGTCCATTTGTTTGTTCTTGTGGTAGGCTTATCATTTCTCGTGTGATAGTTGTAGTTTTGTTTATTATTATTTAAATAAGATTTATACTCTGAATCAA

mRNA sequence

TTTCTCATTTCTCCAAAACTAATCTCTCTCATCCGCCGTCGATTTCACTTCTCCAATTCTCCGCCATGTGCCCCTCCGGTACAGCCGCCGTCCGCTCCGAAATCGCCTCCGACACCGCCGATTTCCGCCAGGCATTCGAGGCGCTCGACGCCGACCGAGACGGAAAGATCAGCCGCGACGATCTCCGCAAGTTCTACAGCGCCGACGCCGACGAAGACGCGATCGGCTCCATGATGGCCGCCGCCGACCTGAATCGCGACGGTTTCGTCGAGTATGACGAGTTCGAGCGCGTGTTGTCCGGCGGAAGGAGGAGATCAACGGGGATCATGGAGGAGGTTTTCAAGGCGATGGATAAGGACGGAGACGGACGGCTGAGTCACGCCGATTTGAAGAGCTACATGCATTTGGCCGGATTTTCGATCTCCGACGAAGACGTTACGGCGATGATCAGATTCGGCGGCGGAGATGAATCGGACGGCGTTAGTTACGACGGATTGCTGAAGATTCTGGCCGTTGATAACGTGTATTAGGTTTTGTTAGTCTCATTTTCGCTGCAGATCTGAAATTTTTTTCCAGGAAAGCGGTTATGAAATGCGAAAGCGCTTTCTCTTTCAAAACAACGCTTTAAACGTGTCTACCAGTTATTGGAGGTATTTAAGTTTATTTAATTTAATAAATTTTAGTGTTCTAAGGGAATCGAACGTGAAAATGTGGCTGGCTTTTTTGTTTTTTTTACTTTGTTTTGAATGGCGATTCGATTCGAAAAGTACGGTCTGATCATTTTGTCCATTTGTTTGTTCTTGTGGTAGGCTTATCATTTCTCGTGTGATAGTTGTAGTTTTGTTTATTATTATTTAAATAAGATTTATACTCTGAATCAA

Coding sequence (CDS)

ATGTGCCCCTCCGGTACAGCCGCCGTCCGCTCCGAAATCGCCTCCGACACCGCCGATTTCCGCCAGGCATTCGAGGCGCTCGACGCCGACCGAGACGGAAAGATCAGCCGCGACGATCTCCGCAAGTTCTACAGCGCCGACGCCGACGAAGACGCGATCGGCTCCATGATGGCCGCCGCCGACCTGAATCGCGACGGTTTCGTCGAGTATGACGAGTTCGAGCGCGTGTTGTCCGGCGGAAGGAGGAGATCAACGGGGATCATGGAGGAGGTTTTCAAGGCGATGGATAAGGACGGAGACGGACGGCTGAGTCACGCCGATTTGAAGAGCTACATGCATTTGGCCGGATTTTCGATCTCCGACGAAGACGTTACGGCGATGATCAGATTCGGCGGCGGAGATGAATCGGACGGCGTTAGTTACGACGGATTGCTGAAGATTCTGGCCGTTGATAACGTGTATTAG

Protein sequence

MCPSGTAAVRSEIASDTADFRQAFEALDADRDGKISRDDLRKFYSADADEDAIGSMMAAADLNRDGFVEYDEFERVLSGGRRRSTGIMEEVFKAMDKDGDGRLSHADLKSYMHLAGFSISDEDVTAMIRFGGGDESDGVSYDGLLKILAVDNVY

Homology

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BLAST of Sed0018605 vs. NCBI nr
Match: XP_022138085.1 (calmodulin-A [Momordica charantia])

HSP 1 Score: 259.2 bits (661), Expect = 2.2e-65
Identity = 131/154 (85.06%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 1   MCPSGTAAVRSEIASDTADFRQAFEALDADRDGKISRDDLRKFYSADADEDAIGSMMAAA 60
           MCPSGTAA     A+  ADFRQAFE LDADRDGKISRDDLR FYSADADEDAIGSM+  A
Sbjct: 1   MCPSGTAAT---TATSPADFRQAFEVLDADRDGKISRDDLRNFYSADADEDAIGSMILVA 60

Query: 61  DLNRDGFVEYDEFERVLSGGRRRSTGIMEEVFKAMDKDGDGRLSHADLKSYMHLAGFSIS 120
           DLNR+GFVEYDEFERVLSGGRRRS GIMEEVFKAMDKDGDGRLSHADLKSYMHLAGFSI+
Sbjct: 61  DLNRNGFVEYDEFERVLSGGRRRSAGIMEEVFKAMDKDGDGRLSHADLKSYMHLAGFSIT 120

Query: 121 DEDVTAMIRFGGGDESDGVSYDGLLKILAVDNVY 155
           DE+V AMIRFGG DE++GVSYDGLLKILAVDN++
Sbjct: 121 DEEVAAMIRFGGADEAEGVSYDGLLKILAVDNIF 151

[Close]

BLAST of Sed0018605 vs. NCBI nr
Match: XP_008438964.1 (PREDICTED: calmodulin [Cucumis melo] >KAA0049553.1 calmodulin [Cucumis melo var. makuwa] >TYK16230.1 calmodulin [Cucumis melo var. makuwa])

HSP 1 Score: 258.5 bits (659), Expect = 3.8e-65
Identity = 133/156 (85.26%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 1   MCPSGTAAVRSEIASDTADFRQAFEALDADRDGKISRDDLRKFYS--ADADEDAIGSMMA 60
           MCPSGTA+ RS++AS    FRQAFE LDAD DGKISRDDLRKFYS   DADEDAIGSM+A
Sbjct: 1   MCPSGTASDRSDVAS--VGFRQAFEVLDADHDGKISRDDLRKFYSGGGDADEDAIGSMIA 60

Query: 61  AADLNRDGFVEYDEFERVLSGGRRRSTGIMEEVFKAMDKDGDGRLSHADLKSYMHLAGFS 120
           AADLNR+G VEY+EFERVLSGGRRRSTGIMEEVFK MDKDGDGRLSHADLKSYMHLAGFS
Sbjct: 61  AADLNRNGVVEYEEFERVLSGGRRRSTGIMEEVFKTMDKDGDGRLSHADLKSYMHLAGFS 120

Query: 121 ISDEDVTAMIRFGGGDESDGVSYDGLLKILAVDNVY 155
           ISDE+VTAMIRFGGGDESDGV Y+GLLKILA+DN+Y
Sbjct: 121 ISDEEVTAMIRFGGGDESDGVCYEGLLKILAIDNMY 154

[Close]

BLAST of Sed0018605 vs. NCBI nr
Match: XP_038891278.1 (calcium-binding protein CP1 [Benincasa hispida])

HSP 1 Score: 255.8 bits (652), Expect = 2.4e-64
Identity = 131/156 (83.97%), Postives = 142/156 (91.03%), Query Frame = 0


Query: 1   MCPSGTAAVRSEIASDTADFRQAFEALDADRDGKISRDDLRKFYS--ADADEDAIGSMMA 60
           MCPSGT++ RS++A   ADFRQAFEALDAD DGKIS DDLRKFYS   DADED IGSM+A
Sbjct: 1   MCPSGTSSGRSDVA---ADFRQAFEALDADHDGKISPDDLRKFYSGAGDADEDTIGSMIA 60

Query: 61  AADLNRDGFVEYDEFERVLSGGRRRSTGIMEEVFKAMDKDGDGRLSHADLKSYMHLAGFS 120
            ADLNR+GFVEY+EFERVLSGGRRRSTGIMEEVFK MDKDGDGRLSHADLKSYMHLAGFS
Sbjct: 61  VADLNRNGFVEYEEFERVLSGGRRRSTGIMEEVFKTMDKDGDGRLSHADLKSYMHLAGFS 120

Query: 121 ISDEDVTAMIRFGGGDESDGVSYDGLLKILAVDNVY 155
           ISDE+V AMIRFGGGDESDGV Y+GLLKILAVDN++
Sbjct: 121 ISDEEVAAMIRFGGGDESDGVCYEGLLKILAVDNIF 153

[Close]

BLAST of Sed0018605 vs. NCBI nr
Match: XP_022955465.1 (calmodulin-beta-like [Cucurbita moschata])

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-63
Identity = 131/154 (85.06%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 1   MCPSGTAAVRSEIASDTADFRQAFEALDADRDGKISRDDLRKFYSADADEDAIGSMMAAA 60
           MCPSGTAA  S+ A     FRQAFEALDAD DGKISRDDLRKFYS DADEDAI SM+A A
Sbjct: 1   MCPSGTAASYSDTA---PAFRQAFEALDADHDGKISRDDLRKFYSKDADEDAIRSMIAVA 60

Query: 61  DLNRDGFVEYDEFERVLSGGRRRSTGIMEEVFKAMDKDGDGRLSHADLKSYMHLAGFSIS 120
           DLNR+GFVEY+EFERVLS GRRRSTGIMEEVFK MDKDGDGRLSHADLKSYMH AGFSIS
Sbjct: 61  DLNRNGFVEYEEFERVLSSGRRRSTGIMEEVFKTMDKDGDGRLSHADLKSYMHFAGFSIS 120

Query: 121 DEDVTAMIRFGGGDESDGVSYDGLLKILAVDNVY 155
           DE+V AMIRFGGGDESDGVSY+GLLKIL+VDNVY
Sbjct: 121 DEEVEAMIRFGGGDESDGVSYEGLLKILSVDNVY 151

[Close]

BLAST of Sed0018605 vs. NCBI nr
Match: XP_022979972.1 (calmodulin-A-like [Cucurbita maxima])

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-63
Identity = 131/154 (85.06%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 1   MCPSGTAAVRSEIASDTADFRQAFEALDADRDGKISRDDLRKFYSADADEDAIGSMMAAA 60
           MCPSGTAA  S+ A     FRQAFEALDAD DGKISRDDLRKFYS DADEDAI SM+A A
Sbjct: 1   MCPSGTAASYSDTA---PAFRQAFEALDADHDGKISRDDLRKFYSKDADEDAIRSMIAVA 60

Query: 61  DLNRDGFVEYDEFERVLSGGRRRSTGIMEEVFKAMDKDGDGRLSHADLKSYMHLAGFSIS 120
           DLNR+GFVEY+EFERVLS GRRRSTGIMEEVFK MDKDGDGRLSHADLKSYMH AGFSIS
Sbjct: 61  DLNRNGFVEYEEFERVLSSGRRRSTGIMEEVFKTMDKDGDGRLSHADLKSYMHFAGFSIS 120

Query: 121 DEDVTAMIRFGGGDESDGVSYDGLLKILAVDNVY 155
           DE+V AMI+FGGGDESDGVSY+GLLKILAVDNVY
Sbjct: 121 DEEVEAMIKFGGGDESDGVSYEGLLKILAVDNVY 151

[Close]

BLAST of Sed0018605 vs. ExPASy Swiss-Prot
Match: Q9FDX6 (Calcium-binding protein CP1 OS=Arabidopsis thaliana OX=3702 GN=CP1 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.4e-38
Identity = 84/158 (53.16%), Postives = 110/158 (69.62%), Query Frame = 0


Query: 1   MCPSGTAAVRSEIASDTADFRQAFEALDADRDGKISRDDLRKFYSA-----DADEDAIGS 60
           MCPSG  A+     ++  +FR AFE +D D DGKIS DDLR FY+      + DE  IG+
Sbjct: 1   MCPSGRIAIPITTTAN-PNFRPAFEIIDTDHDGKISSDDLRAFYAGIPSGENNDETMIGT 60

Query: 61  MMAAADLNRDGFVEYDEFERVLS------GGRRRSTGIMEEVFKAMDKDGDGRLSHADLK 120
           M++ AD N+DGFVE+DEFE+VL        G     G+M++VFK MDKDGDGRLS+ DLK
Sbjct: 61  MISVADANKDGFVEFDEFEKVLETTPFSRSGNGGDDGLMKDVFKVMDKDGDGRLSYGDLK 120

Query: 121 SYMHLAGFSISDEDVTAMIRFGGGDESDGVSYDGLLKI 148
           SYM  AG +++D+++ +MIR  GGD +DGVS+DGLLKI
Sbjct: 121 SYMDSAGLAVTDDEIKSMIRLAGGDLNDGVSFDGLLKI 157

[Close]

BLAST of Sed0018605 vs. ExPASy Swiss-Prot
Match: P23286 (Calmodulin OS=Candida albicans OX=5476 GN=CMD1 PE=3 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 8.0e-10
Identity = 39/137 (28.47%), Postives = 69/137 (50.36%), Query Frame = 0


Query: 18  ADFRQAFEALDADRDGKISRDDL---RKFYSADADEDAIGSMMAAADLNRDGFVEYDEFE 77
           A+F++AF   D D DGKI+  +L    +    +  E  +  M+   D+N DG +++ EF 
Sbjct: 11  AEFKEAFSLFDKDSDGKITTKELGTVMRSLGQNPSESELTDMINEVDVNSDGSIDFPEFL 70

Query: 78  RVLSGGRRRSTGIME--EVFKAMDKDGDGRLSHADLKSYMHLAGFSISDEDVTAMIRFGG 137
            +++   + +    E  E FK  D++GDG++S A+L+  +   G  +SD DV  MI+   
Sbjct: 71  TMMARKMKDTDSEAEIAEAFKVFDRNGDGKISAAELRHLLTSIGEKLSDADVDQMIKEAD 130

Query: 138 GDESDGVSYDGLLKILA 150
            +    +       +LA
Sbjct: 131 TNNDGEIDIQEFTSLLA 147

[Close]

BLAST of Sed0018605 vs. ExPASy Swiss-Prot
Match: P02599 (Calmodulin OS=Dictyostelium discoideum OX=44689 GN=calA PE=1 SV=3)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-09
Identity = 45/152 (29.61%), Postives = 78/152 (51.32%), Query Frame = 0


Query: 7   AAVRSEIASDTADFRQAFEALDADRDGKISRDDL---RKFYSADADEDAIGSMMAAADLN 66
           A+  S      A+F++AF   D D DG I+  +L    +    +  E  +  M+   D +
Sbjct: 2   ASQESLTEEQIAEFKEAFSLFDKDGDGSITTKELGTVMRSLGQNPTEAELQDMINEVDAD 61

Query: 67  RDGFVEYDEFERVLSGGRRRSTGIMEEV---FKAMDKDGDGRLSHADLKSYMHLAGFSIS 126
            +G +++ EF  +++  + + T   EE+   FK  DKDG+G +S A+L+  M   G  ++
Sbjct: 62  GNGNIDFPEFLTMMA-RKMQDTDTEEEIREAFKVFDKDGNGYISAAELRHVMTSLGEKLT 121

Query: 127 DEDVTAMIRFGGGDESDGVSYDGLLKILAVDN 153
           +E+V  MIR    D    V+YD  +K++ V N
Sbjct: 122 NEEVDEMIREADLDGDGQVNYDEFVKMMIVRN 152

[Close]

BLAST of Sed0018605 vs. ExPASy Swiss-Prot
Match: O96102 (Calmodulin OS=Physarum polycephalum OX=5791 PE=2 SV=3)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-09
Identity = 43/137 (31.39%), Postives = 72/137 (52.55%), Query Frame = 0


Query: 18  ADFRQAFEALDADRDGKISRDDL---RKFYSADADEDAIGSMMAAADLNRDGFVEYDEFE 77
           A+F++AF   D D DG I+  +L    +    +  E  +  M+   D + +G +++ EF 
Sbjct: 11  AEFKEAFSLFDKDGDGNITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 70

Query: 78  RVLSGGRRRSTGIMEEV---FKAMDKDGDGRLSHADLKSYMHLAGFSISDEDVTAMIRFG 137
            +++  +   T   EE+   FK  DKDG+G +S A+L+  M   G  +SDE+V  MIR  
Sbjct: 71  TMMA-RKMADTDTEEEIREAFKVFDKDGNGFISAAELRHVMTNLGEKLSDEEVDEMIREA 130

Query: 138 GGDESDGVSYDGLLKIL 149
             D    V+YD  +K++
Sbjct: 131 DVDGDGQVNYDEFVKMM 146

[Close]

BLAST of Sed0018605 vs. ExPASy Swiss-Prot
Match: P62184 (Calmodulin OS=Renilla reniformis OX=6136 PE=1 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-09
Identity = 42/137 (30.66%), Postives = 73/137 (53.28%), Query Frame = 0


Query: 18  ADFRQAFEALDADRDGKISRDDL---RKFYSADADEDAIGSMMAAADLNRDGFVEYDEFE 77
           A+F++AF   D D DG I+  +L    +    +  E  +  M+   D + DG +++ EF 
Sbjct: 11  AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFL 70

Query: 78  RVLSGGRRRSTGIMEEV---FKAMDKDGDGRLSHADLKSYMHLAGFSISDEDVTAMIRFG 137
            +++  + + T   EE+   F+  DKDGDG +S A+L+  M   G  ++DE+V  MIR  
Sbjct: 71  TMMA-RKMKDTDSEEEIREAFRVFDKDGDGFISAAELRHVMTNLGEKLTDEEVDEMIREA 130

Query: 138 GGDESDGVSYDGLLKIL 149
             D    V+Y+  +K++
Sbjct: 131 DIDGDGQVNYEEFVKMM 146

[Close]

BLAST of Sed0018605 vs. ExPASy TrEMBL
Match: A0A6J1C8G1 (calmodulin-A OS=Momordica charantia OX=3673 GN=LOC111009342 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.1e-65
Identity = 131/154 (85.06%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 1   MCPSGTAAVRSEIASDTADFRQAFEALDADRDGKISRDDLRKFYSADADEDAIGSMMAAA 60
           MCPSGTAA     A+  ADFRQAFE LDADRDGKISRDDLR FYSADADEDAIGSM+  A
Sbjct: 1   MCPSGTAAT---TATSPADFRQAFEVLDADRDGKISRDDLRNFYSADADEDAIGSMILVA 60

Query: 61  DLNRDGFVEYDEFERVLSGGRRRSTGIMEEVFKAMDKDGDGRLSHADLKSYMHLAGFSIS 120
           DLNR+GFVEYDEFERVLSGGRRRS GIMEEVFKAMDKDGDGRLSHADLKSYMHLAGFSI+
Sbjct: 61  DLNRNGFVEYDEFERVLSGGRRRSAGIMEEVFKAMDKDGDGRLSHADLKSYMHLAGFSIT 120

Query: 121 DEDVTAMIRFGGGDESDGVSYDGLLKILAVDNVY 155
           DE+V AMIRFGG DE++GVSYDGLLKILAVDN++
Sbjct: 121 DEEVAAMIRFGGADEAEGVSYDGLLKILAVDNIF 151

[Close]

BLAST of Sed0018605 vs. ExPASy TrEMBL
Match: A0A5D3CXZ4 (Calmodulin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001590 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.8e-65
Identity = 133/156 (85.26%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 1   MCPSGTAAVRSEIASDTADFRQAFEALDADRDGKISRDDLRKFYS--ADADEDAIGSMMA 60
           MCPSGTA+ RS++AS    FRQAFE LDAD DGKISRDDLRKFYS   DADEDAIGSM+A
Sbjct: 1   MCPSGTASDRSDVAS--VGFRQAFEVLDADHDGKISRDDLRKFYSGGGDADEDAIGSMIA 60

Query: 61  AADLNRDGFVEYDEFERVLSGGRRRSTGIMEEVFKAMDKDGDGRLSHADLKSYMHLAGFS 120
           AADLNR+G VEY+EFERVLSGGRRRSTGIMEEVFK MDKDGDGRLSHADLKSYMHLAGFS
Sbjct: 61  AADLNRNGVVEYEEFERVLSGGRRRSTGIMEEVFKTMDKDGDGRLSHADLKSYMHLAGFS 120

Query: 121 ISDEDVTAMIRFGGGDESDGVSYDGLLKILAVDNVY 155
           ISDE+VTAMIRFGGGDESDGV Y+GLLKILA+DN+Y
Sbjct: 121 ISDEEVTAMIRFGGGDESDGVCYEGLLKILAIDNMY 154

[Close]

BLAST of Sed0018605 vs. ExPASy TrEMBL
Match: A0A1S3AXP3 (calmodulin OS=Cucumis melo OX=3656 GN=LOC103483899 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.8e-65
Identity = 133/156 (85.26%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 1   MCPSGTAAVRSEIASDTADFRQAFEALDADRDGKISRDDLRKFYS--ADADEDAIGSMMA 60
           MCPSGTA+ RS++AS    FRQAFE LDAD DGKISRDDLRKFYS   DADEDAIGSM+A
Sbjct: 1   MCPSGTASDRSDVAS--VGFRQAFEVLDADHDGKISRDDLRKFYSGGGDADEDAIGSMIA 60

Query: 61  AADLNRDGFVEYDEFERVLSGGRRRSTGIMEEVFKAMDKDGDGRLSHADLKSYMHLAGFS 120
           AADLNR+G VEY+EFERVLSGGRRRSTGIMEEVFK MDKDGDGRLSHADLKSYMHLAGFS
Sbjct: 61  AADLNRNGVVEYEEFERVLSGGRRRSTGIMEEVFKTMDKDGDGRLSHADLKSYMHLAGFS 120

Query: 121 ISDEDVTAMIRFGGGDESDGVSYDGLLKILAVDNVY 155
           ISDE+VTAMIRFGGGDESDGV Y+GLLKILA+DN+Y
Sbjct: 121 ISDEEVTAMIRFGGGDESDGVCYEGLLKILAIDNMY 154

[Close]

BLAST of Sed0018605 vs. ExPASy TrEMBL
Match: A0A6J1IQ64 (calmodulin-A-like OS=Cucurbita maxima OX=3661 GN=LOC111479504 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.9e-64
Identity = 131/154 (85.06%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 1   MCPSGTAAVRSEIASDTADFRQAFEALDADRDGKISRDDLRKFYSADADEDAIGSMMAAA 60
           MCPSGTAA  S+ A     FRQAFEALDAD DGKISRDDLRKFYS DADEDAI SM+A A
Sbjct: 1   MCPSGTAASYSDTA---PAFRQAFEALDADHDGKISRDDLRKFYSKDADEDAIRSMIAVA 60

Query: 61  DLNRDGFVEYDEFERVLSGGRRRSTGIMEEVFKAMDKDGDGRLSHADLKSYMHLAGFSIS 120
           DLNR+GFVEY+EFERVLS GRRRSTGIMEEVFK MDKDGDGRLSHADLKSYMH AGFSIS
Sbjct: 61  DLNRNGFVEYEEFERVLSSGRRRSTGIMEEVFKTMDKDGDGRLSHADLKSYMHFAGFSIS 120

Query: 121 DEDVTAMIRFGGGDESDGVSYDGLLKILAVDNVY 155
           DE+V AMI+FGGGDESDGVSY+GLLKILAVDNVY
Sbjct: 121 DEEVEAMIKFGGGDESDGVSYEGLLKILAVDNVY 151

[Close]

BLAST of Sed0018605 vs. ExPASy TrEMBL
Match: A0A6J1GV73 (calmodulin-beta-like OS=Cucurbita moschata OX=3662 GN=LOC111457482 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.9e-64
Identity = 131/154 (85.06%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 1   MCPSGTAAVRSEIASDTADFRQAFEALDADRDGKISRDDLRKFYSADADEDAIGSMMAAA 60
           MCPSGTAA  S+ A     FRQAFEALDAD DGKISRDDLRKFYS DADEDAI SM+A A
Sbjct: 1   MCPSGTAASYSDTA---PAFRQAFEALDADHDGKISRDDLRKFYSKDADEDAIRSMIAVA 60

Query: 61  DLNRDGFVEYDEFERVLSGGRRRSTGIMEEVFKAMDKDGDGRLSHADLKSYMHLAGFSIS 120
           DLNR+GFVEY+EFERVLS GRRRSTGIMEEVFK MDKDGDGRLSHADLKSYMH AGFSIS
Sbjct: 61  DLNRNGFVEYEEFERVLSSGRRRSTGIMEEVFKTMDKDGDGRLSHADLKSYMHFAGFSIS 120

Query: 121 DEDVTAMIRFGGGDESDGVSYDGLLKILAVDNVY 155
           DE+V AMIRFGGGDESDGVSY+GLLKIL+VDNVY
Sbjct: 121 DEEVEAMIRFGGGDESDGVSYEGLLKILSVDNVY 151

[Close]

BLAST of Sed0018605 vs. TAIR 10
Match: AT5G49480.1 (Ca2+-binding protein 1 )

HSP 1 Score: 159.8 bits (403), Expect = 1.7e-39
Identity = 84/158 (53.16%), Postives = 110/158 (69.62%), Query Frame = 0


Query: 1   MCPSGTAAVRSEIASDTADFRQAFEALDADRDGKISRDDLRKFYSA-----DADEDAIGS 60
           MCPSG  A+     ++  +FR AFE +D D DGKIS DDLR FY+      + DE  IG+
Sbjct: 1   MCPSGRIAIPITTTAN-PNFRPAFEIIDTDHDGKISSDDLRAFYAGIPSGENNDETMIGT 60

Query: 61  MMAAADLNRDGFVEYDEFERVLS------GGRRRSTGIMEEVFKAMDKDGDGRLSHADLK 120
           M++ AD N+DGFVE+DEFE+VL        G     G+M++VFK MDKDGDGRLS+ DLK
Sbjct: 61  MISVADANKDGFVEFDEFEKVLETTPFSRSGNGGDDGLMKDVFKVMDKDGDGRLSYGDLK 120

Query: 121 SYMHLAGFSISDEDVTAMIRFGGGDESDGVSYDGLLKI 148
           SYM  AG +++D+++ +MIR  GGD +DGVS+DGLLKI
Sbjct: 121 SYMDSAGLAVTDDEIKSMIRLAGGDLNDGVSFDGLLKI 157

[Close]

BLAST of Sed0018605 vs. TAIR 10
Match: AT5G37770.1 (EF hand calcium-binding protein family )

HSP 1 Score: 62.8 bits (151), Expect = 2.8e-10
Identity = 48/155 (30.97%), Postives = 75/155 (48.39%), Query Frame = 0


Query: 4   SGTAAVRSEIASDTADFRQAFEALDADRDGKISRDDLR---KFYSADADEDAIGSMMAAA 63
           S    VRS + S   D ++ F+  D + DGKIS D+L+   +  S  A  +   +MM   
Sbjct: 3   SKNGVVRSCLGS-MDDIKKVFQRFDKNGDGKISVDELKEVIRALSPTASPEETVTMMKQF 62

Query: 64  DLNRDGFVEYDEFERVL------SGGRRRSTGIMEEVFKAMDKDGDGRLSHADLKSYMHL 123
           DL+ +GF++ DEF  +        G  R     ++E F+  D DG+GR+S  +L S M  
Sbjct: 63  DLDGNGFIDLDEFVALFQIGIGGGGNNRNDVSDLKEAFELYDLDGNGRISAKELHSVMKN 122

Query: 124 AGFSISDEDVTAMIRFGGGDESDGVSYDGLLKILA 150
            G   S +D   MI     D    V++D   K+++
Sbjct: 123 LGEKCSVQDCKKMISKVDIDGDGCVNFDEFKKMMS 156

[Close]

BLAST of Sed0018605 vs. TAIR 10
Match: AT3G22930.1 (calmodulin-like 11 )

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-09
Identity = 37/138 (26.81%), Postives = 73/138 (52.90%), Query Frame = 0


Query: 19  DFRQAFEALDADRDGKISRDDLR---KFYSADADEDAIGSMMAAADLNRDGFVEYDEFER 78
           +F++AF   D D DG I+ D+L    +    +  E  +  M+   D + +G +E+ EF  
Sbjct: 35  EFKEAFCLFDKDGDGCITADELATVIRSLDQNPTEQELQDMITEIDSDGNGTIEFSEFLN 94

Query: 79  VLSGGRRRSTG--IMEEVFKAMDKDGDGRLSHADLKSYMHLAGFSISDEDVTAMIRFGGG 138
           +++   + +     ++E FK  DKD +G +S ++L+  M   G  ++DE+V  MI+    
Sbjct: 95  LMANQLQETDADEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVDQMIKEADL 154

Query: 139 DESDGVSYDGLLKILAVD 152
           D    V+YD  ++++ ++
Sbjct: 155 DGDGQVNYDEFVRMMMIN 172

[Close]

BLAST of Sed0018605 vs. TAIR 10
Match: AT1G66400.1 (calmodulin like 23 )

HSP 1 Score: 58.2 bits (139), Expect = 7.0e-09
Identity = 41/140 (29.29%), Postives = 71/140 (50.71%), Query Frame = 0


Query: 19  DFRQAFEALDADRDGKISRDDLRKFYSA---DADEDAIGSMMAAADLNRDGFVEYDEFER 78
           D ++ F+  D + DGKIS D+L+    A   +A ++   +MM   DL+ +GF++ DEF  
Sbjct: 15  DIKKVFQRFDKNNDGKISIDELKDVIGALSPNASQEETKAMMKEFDLDGNGFIDLDEFVA 74

Query: 79  V--LSGGRRRSTGI--MEEVFKAMDKDGDGRLSHADLKSYMHLAGFSISDEDVTAMIRFG 138
           +  +S     ++ I  ++E F   D D +GR+S  +L S M   G   S +D   MI   
Sbjct: 75  LFQISDQSSNNSAIRDLKEAFDLYDLDRNGRISANELHSVMKNLGEKCSIQDCQRMINKV 134

Query: 139 GGDESDGVSYDGLLKILAVD 152
             D    V ++   K++ ++
Sbjct: 135 DSDGDGCVDFEEFKKMMMIN 154

[Close]

BLAST of Sed0018605 vs. TAIR 10
Match: AT5G21274.1 (calmodulin 6 )

HSP 1 Score: 58.2 bits (139), Expect = 7.0e-09
Identity = 37/136 (27.21%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 18  ADFRQAFEALDADRDGKISRDDL---RKFYSADADEDAIGSMMAAADLNRDGFVEYDEFE 77
           ++F++AF   D D DG I+  +L    +    +  E  +  M+   D + +G +++ EF 
Sbjct: 11  SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 70

Query: 78  RVLSGGRR--RSTGIMEEVFKAMDKDGDGRLSHADLKSYMHLAGFSISDEDVTAMIRFGG 137
            +++   +   S   ++E F+  DKD +G +S A+L+  M   G  +SDE+V  MIR   
Sbjct: 71  NLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLSDEEVDEMIREAD 130

Query: 138 GDESDGVSYDGLLKIL 149
            D    ++Y+  +K++
Sbjct: 131 VDGDGQINYEEFVKVM 146

The following BLAST results are available for this feature:

BLAST of Sed0018605 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138085.1	2.2e-65	85.06	calmodulin-A [Momordica charantia]	[more]
XP_008438964.1	3.8e-65	85.26	PREDICTED: calmodulin [Cucumis melo] >KAA0049553.1 calmodulin [Cucumis melo var....	[more]
XP_038891278.1	2.4e-64	83.97	calcium-binding protein CP1 [Benincasa hispida]	[more]
XP_022955465.1	1.2e-63	85.06	calmodulin-beta-like [Cucurbita moschata]	[more]
XP_022979972.1	1.2e-63	85.06	calmodulin-A-like [Cucurbita maxima]	[more]

BLAST of Sed0018605 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FDX6	2.4e-38	53.16	Calcium-binding protein CP1 OS=Arabidopsis thaliana OX=3702 GN=CP1 PE=2 SV=1	[more]
P23286	8.0e-10	28.47	Calmodulin OS=Candida albicans OX=5476 GN=CMD1 PE=3 SV=2	[more]
P02599	1.0e-09	29.61	Calmodulin OS=Dictyostelium discoideum OX=44689 GN=calA PE=1 SV=3	[more]
O96102	1.0e-09	31.39	Calmodulin OS=Physarum polycephalum OX=5791 PE=2 SV=3	[more]
P62184	1.0e-09	30.66	Calmodulin OS=Renilla reniformis OX=6136 PE=1 SV=2	[more]

BLAST of Sed0018605 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C8G1	1.1e-65	85.06	calmodulin-A OS=Momordica charantia OX=3673 GN=LOC111009342 PE=4 SV=1	[more]
A0A5D3CXZ4	1.8e-65	85.26	Calmodulin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001590 PE...	[more]
A0A1S3AXP3	1.8e-65	85.26	calmodulin OS=Cucumis melo OX=3656 GN=LOC103483899 PE=4 SV=1	[more]
A0A6J1IQ64	5.9e-64	85.06	calmodulin-A-like OS=Cucurbita maxima OX=3661 GN=LOC111479504 PE=4 SV=1	[more]
A0A6J1GV73	5.9e-64	85.06	calmodulin-beta-like OS=Cucurbita moschata OX=3662 GN=LOC111457482 PE=4 SV=1	[more]

BLAST of Sed0018605 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49480.1	1.7e-39	53.16	Ca2+-binding protein 1	[more]
AT5G37770.1	2.8e-10	30.97	EF hand calcium-binding protein family	[more]
AT3G22930.1	1.8e-09	26.81	calmodulin-like 11	[more]
AT1G66400.1	7.0e-09	29.29	calmodulin like 23	[more]
AT5G21274.1	7.0e-09	27.21	calmodulin 6	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 52..80 e-value: 0.23 score: 20.5 coord: 87..115 e-value: 0.046 score: 22.9 coord: 19..47 e-value: 0.0012 score: 28.1
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 20..76 e-value: 4.9E-10 score: 39.7
IPR002048	EF-hand domain	PFAM	PF13202	EF-hand_5	coord: 89..109 e-value: 4.4E-5 score: 22.8
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 83..118 score: 13.174425
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 15..50 score: 13.481276
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 19..73 e-value: 3.60405E-10 score: 51.0093
None	No IPR available	GENE3D	1.10.238.10		coord: 5..153 e-value: 9.2E-29 score: 102.1
None	No IPR available	PANTHER	PTHR23050	CALCIUM BINDING PROTEIN	coord: 1..153
None	No IPR available	PANTHER	PTHR23050:SF392	CALMODULIN-RELATED PROTEIN 97A-LIKE	coord: 1..153
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 28..40
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 96..108
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 15..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018605.1	Sed0018605.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042538	hyperosmotic salinity response
biological_process	GO:0000278	mitotic cell cycle
cellular_component	GO:0005814	centriole
cellular_component	GO:0005829	cytosol
molecular_function	GO:0005509	calcium ion binding