Sed0018605 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTCTCATTTCTCCAAAACTAATCTCTCTCATCCGCCGTCGATTTCACTTCTCCAATTCTCCGCCATGTGCCCCTCCGGTACAGCCGCCGTCCGCTCCGAAATCGCCTCCGACACCGCCGATTTCCGCCAGGCATTCGAGGCGCTCGACGCCGACCGAGACGGAAAGATCAGCCGCGACGATCTCCGCAAGTTCTACAGCGCCGACGCCGACGAAGACGCGATCGGCTCCATGATGGCCGCCGCCGACCTGAATCGCGACGGTTTCGTCGAGTATGACGAGTTCGAGCGCGTGTTGTCCGGCGGAAGGAGGAGATCAACGGGGATCATGGAGGAGGTTTTCAAGGCGATGGATAAGGACGGAGACGGACGGCTGAGTCACGCCGATTTGAAGAGCTACATGCATTTGGCCGGATTTTCGATCTCCGACGAAGACGTTACGGCGATGATCAGATTCGGCGGCGGAGATGAATCGGACGGCGTTAGTTACGACGGATTGCTGAAGATTCTGGCCGTTGATAACGTGTATTAGGTTTTGTTAGTCTCATTTTCGCTGCAGATCTGAAATTTTTTTCCAGGAAAGCGGTTATGAAATGCGAAAGCGCTTTCTCTTTCAAAACAACGCTTTAAACGTGTCTACCAGTTATTGGAGGTATTTAAGTTTATTTAATTTAATAAATTTTAGTGTTCTAAGGGAATCGAACGTGAAAATGTGGCTGGCTTTTTTGTTTTTTTTACTTTGTTTTGAATGGCGATTCGATTCGAAAAGTACGGTCTGATCATTTTGTCCATTTGTTTGTTCTTGTGGTAGGCTTATCATTTCTCGTGTGATAGTTGTAGTTTTGTTTATTATTATTTAAATAAGATTTATACTCTGAATCAA TTTCTCATTTCTCCAAAACTAATCTCTCTCATCCGCCGTCGATTTCACTTCTCCAATTCTCCGCCATGTGCCCCTCCGGTACAGCCGCCGTCCGCTCCGAAATCGCCTCCGACACCGCCGATTTCCGCCAGGCATTCGAGGCGCTCGACGCCGACCGAGACGGAAAGATCAGCCGCGACGATCTCCGCAAGTTCTACAGCGCCGACGCCGACGAAGACGCGATCGGCTCCATGATGGCCGCCGCCGACCTGAATCGCGACGGTTTCGTCGAGTATGACGAGTTCGAGCGCGTGTTGTCCGGCGGAAGGAGGAGATCAACGGGGATCATGGAGGAGGTTTTCAAGGCGATGGATAAGGACGGAGACGGACGGCTGAGTCACGCCGATTTGAAGAGCTACATGCATTTGGCCGGATTTTCGATCTCCGACGAAGACGTTACGGCGATGATCAGATTCGGCGGCGGAGATGAATCGGACGGCGTTAGTTACGACGGATTGCTGAAGATTCTGGCCGTTGATAACGTGTATTAGGTTTTGTTAGTCTCATTTTCGCTGCAGATCTGAAATTTTTTTCCAGGAAAGCGGTTATGAAATGCGAAAGCGCTTTCTCTTTCAAAACAACGCTTTAAACGTGTCTACCAGTTATTGGAGGTATTTAAGTTTATTTAATTTAATAAATTTTAGTGTTCTAAGGGAATCGAACGTGAAAATGTGGCTGGCTTTTTTGTTTTTTTTACTTTGTTTTGAATGGCGATTCGATTCGAAAAGTACGGTCTGATCATTTTGTCCATTTGTTTGTTCTTGTGGTAGGCTTATCATTTCTCGTGTGATAGTTGTAGTTTTGTTTATTATTATTTAAATAAGATTTATACTCTGAATCAA ATGTGCCCCTCCGGTACAGCCGCCGTCCGCTCCGAAATCGCCTCCGACACCGCCGATTTCCGCCAGGCATTCGAGGCGCTCGACGCCGACCGAGACGGAAAGATCAGCCGCGACGATCTCCGCAAGTTCTACAGCGCCGACGCCGACGAAGACGCGATCGGCTCCATGATGGCCGCCGCCGACCTGAATCGCGACGGTTTCGTCGAGTATGACGAGTTCGAGCGCGTGTTGTCCGGCGGAAGGAGGAGATCAACGGGGATCATGGAGGAGGTTTTCAAGGCGATGGATAAGGACGGAGACGGACGGCTGAGTCACGCCGATTTGAAGAGCTACATGCATTTGGCCGGATTTTCGATCTCCGACGAAGACGTTACGGCGATGATCAGATTCGGCGGCGGAGATGAATCGGACGGCGTTAGTTACGACGGATTGCTGAAGATTCTGGCCGTTGATAACGTGTATTAG MCPSGTAAVRSEIASDTADFRQAFEALDADRDGKISRDDLRKFYSADADEDAIGSMMAAADLNRDGFVEYDEFERVLSGGRRRSTGIMEEVFKAMDKDGDGRLSHADLKSYMHLAGFSISDEDVTAMIRFGGGDESDGVSYDGLLKILAVDNVY Homology
BLAST of Sed0018605 vs. NCBI nr
Match: XP_022138085.1 (calmodulin-A [Momordica charantia]) HSP 1 Score: 259.2 bits (661), Expect = 2.2e-65 Identity = 131/154 (85.06%), Postives = 140/154 (90.91%), Query Frame = 0
BLAST of Sed0018605 vs. NCBI nr
Match: XP_008438964.1 (PREDICTED: calmodulin [Cucumis melo] >KAA0049553.1 calmodulin [Cucumis melo var. makuwa] >TYK16230.1 calmodulin [Cucumis melo var. makuwa]) HSP 1 Score: 258.5 bits (659), Expect = 3.8e-65 Identity = 133/156 (85.26%), Postives = 143/156 (91.67%), Query Frame = 0
BLAST of Sed0018605 vs. NCBI nr
Match: XP_038891278.1 (calcium-binding protein CP1 [Benincasa hispida]) HSP 1 Score: 255.8 bits (652), Expect = 2.4e-64 Identity = 131/156 (83.97%), Postives = 142/156 (91.03%), Query Frame = 0
BLAST of Sed0018605 vs. NCBI nr
Match: XP_022955465.1 (calmodulin-beta-like [Cucurbita moschata]) HSP 1 Score: 253.4 bits (646), Expect = 1.2e-63 Identity = 131/154 (85.06%), Postives = 138/154 (89.61%), Query Frame = 0
BLAST of Sed0018605 vs. NCBI nr
Match: XP_022979972.1 (calmodulin-A-like [Cucurbita maxima]) HSP 1 Score: 253.4 bits (646), Expect = 1.2e-63 Identity = 131/154 (85.06%), Postives = 138/154 (89.61%), Query Frame = 0
BLAST of Sed0018605 vs. ExPASy Swiss-Prot
Match: Q9FDX6 (Calcium-binding protein CP1 OS=Arabidopsis thaliana OX=3702 GN=CP1 PE=2 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 2.4e-38 Identity = 84/158 (53.16%), Postives = 110/158 (69.62%), Query Frame = 0
BLAST of Sed0018605 vs. ExPASy Swiss-Prot
Match: P23286 (Calmodulin OS=Candida albicans OX=5476 GN=CMD1 PE=3 SV=2) HSP 1 Score: 65.1 bits (157), Expect = 8.0e-10 Identity = 39/137 (28.47%), Postives = 69/137 (50.36%), Query Frame = 0
BLAST of Sed0018605 vs. ExPASy Swiss-Prot
Match: P02599 (Calmodulin OS=Dictyostelium discoideum OX=44689 GN=calA PE=1 SV=3) HSP 1 Score: 64.7 bits (156), Expect = 1.0e-09 Identity = 45/152 (29.61%), Postives = 78/152 (51.32%), Query Frame = 0
BLAST of Sed0018605 vs. ExPASy Swiss-Prot
Match: O96102 (Calmodulin OS=Physarum polycephalum OX=5791 PE=2 SV=3) HSP 1 Score: 64.7 bits (156), Expect = 1.0e-09 Identity = 43/137 (31.39%), Postives = 72/137 (52.55%), Query Frame = 0
BLAST of Sed0018605 vs. ExPASy Swiss-Prot
Match: P62184 (Calmodulin OS=Renilla reniformis OX=6136 PE=1 SV=2) HSP 1 Score: 64.7 bits (156), Expect = 1.0e-09 Identity = 42/137 (30.66%), Postives = 73/137 (53.28%), Query Frame = 0
BLAST of Sed0018605 vs. ExPASy TrEMBL
Match: A0A6J1C8G1 (calmodulin-A OS=Momordica charantia OX=3673 GN=LOC111009342 PE=4 SV=1) HSP 1 Score: 259.2 bits (661), Expect = 1.1e-65 Identity = 131/154 (85.06%), Postives = 140/154 (90.91%), Query Frame = 0
BLAST of Sed0018605 vs. ExPASy TrEMBL
Match: A0A5D3CXZ4 (Calmodulin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001590 PE=4 SV=1) HSP 1 Score: 258.5 bits (659), Expect = 1.8e-65 Identity = 133/156 (85.26%), Postives = 143/156 (91.67%), Query Frame = 0
BLAST of Sed0018605 vs. ExPASy TrEMBL
Match: A0A1S3AXP3 (calmodulin OS=Cucumis melo OX=3656 GN=LOC103483899 PE=4 SV=1) HSP 1 Score: 258.5 bits (659), Expect = 1.8e-65 Identity = 133/156 (85.26%), Postives = 143/156 (91.67%), Query Frame = 0
BLAST of Sed0018605 vs. ExPASy TrEMBL
Match: A0A6J1IQ64 (calmodulin-A-like OS=Cucurbita maxima OX=3661 GN=LOC111479504 PE=4 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 5.9e-64 Identity = 131/154 (85.06%), Postives = 138/154 (89.61%), Query Frame = 0
BLAST of Sed0018605 vs. ExPASy TrEMBL
Match: A0A6J1GV73 (calmodulin-beta-like OS=Cucurbita moschata OX=3662 GN=LOC111457482 PE=4 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 5.9e-64 Identity = 131/154 (85.06%), Postives = 138/154 (89.61%), Query Frame = 0
BLAST of Sed0018605 vs. TAIR 10
Match: AT5G49480.1 (Ca2+-binding protein 1 ) HSP 1 Score: 159.8 bits (403), Expect = 1.7e-39 Identity = 84/158 (53.16%), Postives = 110/158 (69.62%), Query Frame = 0
BLAST of Sed0018605 vs. TAIR 10
Match: AT5G37770.1 (EF hand calcium-binding protein family ) HSP 1 Score: 62.8 bits (151), Expect = 2.8e-10 Identity = 48/155 (30.97%), Postives = 75/155 (48.39%), Query Frame = 0
BLAST of Sed0018605 vs. TAIR 10
Match: AT3G22930.1 (calmodulin-like 11 ) HSP 1 Score: 60.1 bits (144), Expect = 1.8e-09 Identity = 37/138 (26.81%), Postives = 73/138 (52.90%), Query Frame = 0
BLAST of Sed0018605 vs. TAIR 10
Match: AT1G66400.1 (calmodulin like 23 ) HSP 1 Score: 58.2 bits (139), Expect = 7.0e-09 Identity = 41/140 (29.29%), Postives = 71/140 (50.71%), Query Frame = 0
BLAST of Sed0018605 vs. TAIR 10
Match: AT5G21274.1 (calmodulin 6 ) HSP 1 Score: 58.2 bits (139), Expect = 7.0e-09 Identity = 37/136 (27.21%), Postives = 71/136 (52.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|