Sed0018533 (gene) Chayote v1

Overview
NameSed0018533
Typegene
OrganismSechium edule (Chayote v1)
DescriptionSWIM-type domain-containing protein
LocationLG02: 33483638 .. 33486031 (+)
RNA-Seq ExpressionSed0018533
SyntenySed0018533
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTTGGATTTAGTATTTATATGAATGGAAACATAGTTAATGGACCGAACGTTATCCAATATGATGTGCCATCATACAGACAATTAAGTGTCACACGTGATATTGGATTAGACTCATTCATGAATGGGTTGTGTCAAGGGTTGGGAATCCAAAGAAATGAAGGATTGGAGGTGATTTATAGACACGGAAATATTGGAGTTAATGGGAATATTATATATGCCCCTATCACCATAAGAAGTGATGTAGAATTTAATTTTATGACTGCTCTTGCTCCTCCTCTACCACATACAATAGAGTTGTATGTGTCTCAAATTTACATGGATAGTACATTGGGACACGAAGAAGAAGTAATAGAGCATGCTAGAGAACACAACGACGTTGAATGTAGAGCCACATCTAGAGGGGAAAGGAGAGCCACAGTTGGAGGGGAAAAGAGAGTCACTCATGATGAATGTAGAGTCACCAATGAAGAAACTTGCATTAATATGAATGATGACAACGATGAAGATGATCATGAATTCTTTTATGGGACAGAAGAAGTACCTGAATTTTTTACCACTTTAGACATGACAGTTATTAACTCTCTTCCAGACTCTGGGATTGAATTAGAAGCTAGAGAACCAGATGGACTAATGAAAGGGATGATGTTTGAGACAAAGAAAGATCTAAAAAATGCTGTAAAAAGTTATTCAGTTCTACATCATCAACATTTTAATGTCATTGAGTAAAAAAAGAATATATGGTTAGTTCAATGCAAAATGTACGACAATGGTTGTATGTGGCGACTACGTGGTACTTGCCTTAAGAAACACGGTAAATTTGAAATAACAAAATACAATGGAGTTCATACATGTGTTTACGCAAGGTTAAGTCAAGACCACCATTTATTAGATGCCAATCTTGTTGCTGCAGATGTCCACAACGTCATACGATCAGATCCTTCTAGGAAAGTGAAGGTGTTGCGGACAATTATATTAGAAAAATATGGGTATAACATCACATATTCTAAGGCATGGAGTGGTAAAAGGAAAGCTATTGAGAATATATTTGGAAATTGGGAGGAGTCGTATGGGCTACTGCAAAGGTGGATGTATGTTCTTCAAAGGACCAATCCAGGGTCAGTAGTTCAATATAAGTTCCAACCATTGGAGGGGACTAGCCAACATGTTCAGTTCGATAGTGTGTTTTAGGCATTTGGACCTGCTATTGAAGGGTTTAGACTTGCAGACCTATACTACAAATAGATGGTACACATTTGTATGGAAAGTATAACGGAAAACTATTGATTGCAACAAATGTGGACGCTGATGGTCACATATTCCCACTTGCATTTGCAATTGTACCAGAAGAAAGTGGTGAGTCATGGGGTTGGTTTTTAGAGCATATATGAACTAAAGTGGTTCATAAGAGGAAGGGAATATGCCTTATATATGATAGGCATAAAGGTATTATATCTGTAGTGCGAAATAGTGGTTGGGAAGATGTGCACCATCGCTATTGTTAACGACATGTTGCCTCCAATTTTAATAAAAGGTACAAGAACGAAGCATTGAAAAATTTGGTATATCGTGCAGAGGCACAAAGTCGCGTTGCAAAGTATGAACATTTCATGCGCCAGATCGAAAAGATTGATAGAGGGTGCATGAGATTCTTTACCACTATAGACCCTGTCCAATGGACGTTATCACATGATGGTGGTCATCGTTATGGATGGTTGACTGCAAATGTGGCAGAATCTATTAACGGCATACTTAAAGGGGCTAGGAAATCCCAATATGTGCATTGGTTCAAGCCACATTTTATCGAACTGTGACATACTTTACTGACAGGAGGAGAGATACAGAGAAGCCATTCAGAGTATCAAACAATTTACAGGATATGCAATATCAAAACTACTAAAATGGGAAGAACGTGCAGATGGGCATACTGTAGACATCTTCAATTATATGTTGGGAGAGAGCGATGTTACTACTGGACGTAATAGAAGAACTTTCAAAGGTGGGTTTGTCCATCTAGTCAAACTACATCAAAAAACGTGTACTTGCAATAAGTGGCAGAATTTTGGGATTCCATGTTCTCATGCTATTGCTGTATGCAAGAAAATGCATAGAGATTACTTGGATCTCTTACAATATTATTATCATTTACCAACATACCTGCAATGTTATGCACCTGGATTTGAAGGAATTCCTGACAAAAGCAGTTGGCCAATGATACAATGTCCCACAATTCATCCGAATCCTATGATGAGGAGGGAAAAGGGTCGTCCTTGTTCATCTCGCATTCGAAATGAGATGGATTGGAAGGAGCCAATTGTGAAACACAATTGTGGAATATGTGGAATTGAAGGACATAATCGTCGAAAATGTCCTCATGCTGGCGCTCAATGA

mRNA sequence

ATGGAAGTTGGATTTAGTATTTATATGAATGGAAACATAGTTAATGGACCGAACGTTATCCAATATGATGTGCCATCATACAGACAATTAAGTGTCACACGTGATATTGGATTAGACTCATTCATGAATGGGTTGTGTCAAGGGTTGGGAATCCAAAGAAATGAAGGATTGGAGGTGATTTATAGACACGGAAATATTGGAGTTAATGGGAATATTATATATGCCCCTATCACCATAAGAAGTGATGTAGAATTTAATTTTATGACTGCTCTTGCTCCTCCTCTACCACATACAATAGAGTTGTATGTGTCTCAAATTTACATGGATACCACAGTTGGAGGGGAAAAGAGAGTCACTCATGATGAATGTAGAGTCACCAATGAAGAAACTTGCATTAATATGAATGATGACAACGATGAAGATGATCATGAATTCTTTTATGGGACAGAAGAAGTACCTGAATTTTTTACCACTTTAGACATGACAGTTATTAACTCTCTTCCAGACTCTGGGATTGAATTAGAAGCTAGAGAACCAGATGGACTAATGAAAGGGATGATGTTTGAGACAAAGAAAGATCTAAAAAATGCTGTAAAAAGTTATTCAGTTCTACATCATCAACATTTTAATGTCATTGAGGAAAAGGGTCGTCCTTGTTCATCTCGCATTCGAAATGAGATGGATTGGAAGGAGCCAATTGTGAAACACAATTGTGGAATATGTGGAATTGAAGGACATAATCGTCGAAAATGTCCTCATGCTGGCGCTCAATGA

Coding sequence (CDS)

ATGGAAGTTGGATTTAGTATTTATATGAATGGAAACATAGTTAATGGACCGAACGTTATCCAATATGATGTGCCATCATACAGACAATTAAGTGTCACACGTGATATTGGATTAGACTCATTCATGAATGGGTTGTGTCAAGGGTTGGGAATCCAAAGAAATGAAGGATTGGAGGTGATTTATAGACACGGAAATATTGGAGTTAATGGGAATATTATATATGCCCCTATCACCATAAGAAGTGATGTAGAATTTAATTTTATGACTGCTCTTGCTCCTCCTCTACCACATACAATAGAGTTGTATGTGTCTCAAATTTACATGGATACCACAGTTGGAGGGGAAAAGAGAGTCACTCATGATGAATGTAGAGTCACCAATGAAGAAACTTGCATTAATATGAATGATGACAACGATGAAGATGATCATGAATTCTTTTATGGGACAGAAGAAGTACCTGAATTTTTTACCACTTTAGACATGACAGTTATTAACTCTCTTCCAGACTCTGGGATTGAATTAGAAGCTAGAGAACCAGATGGACTAATGAAAGGGATGATGTTTGAGACAAAGAAAGATCTAAAAAATGCTGTAAAAAGTTATTCAGTTCTACATCATCAACATTTTAATGTCATTGAGGAAAAGGGTCGTCCTTGTTCATCTCGCATTCGAAATGAGATGGATTGGAAGGAGCCAATTGTGAAACACAATTGTGGAATATGTGGAATTGAAGGACATAATCGTCGAAAATGTCCTCATGCTGGCGCTCAATGA

Protein sequence

MEVGFSIYMNGNIVNGPNVIQYDVPSYRQLSVTRDIGLDSFMNGLCQGLGIQRNEGLEVIYRHGNIGVNGNIIYAPITIRSDVEFNFMTALAPPLPHTIELYVSQIYMDTTVGGEKRVTHDECRVTNEETCINMNDDNDEDDHEFFYGTEEVPEFFTTLDMTVINSLPDSGIELEAREPDGLMKGMMFETKKDLKNAVKSYSVLHHQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAGAQ
Homology
[Close]
BLAST of Sed0018533 vs. NCBI nr
Match: XP_038877923.1 (uncharacterized protein LOC120070133 [Benincasa hispida])

HSP 1 Score: 137.1 bits (344), Expect = 2.1e-28
Identity = 87/229 (37.99%), Postives = 133/229 (58.08%), Query Frame = 0 

Query: 3   VGFSIYMNGNIVNGPNVIQYDVPSYRQLSVTRDIGLDSFMNGLCQGLGIQRNEGLEVIYR 62
           V F  YM+GNIVNGP+ I+YD     ++++ R    ++ ++G      I R++ +EVI+R
Sbjct: 4   VEFLCYMHGNIVNGPSGIEYDRQPSLRINMHRQDDFNTLIDGFYDAYSINRDDVVEVIFR 63

Query: 63  HGNIGVNGNIIYAPITIRSDVEFNFMTALAPPLPHTIELYVSQIYMDT---------TVG 122
           +G+  V  +  + PI++RSD++  FM + AP  P+ +ELY+SQ  + +         TV 
Sbjct: 64  YGSY-VARSTFHIPISLRSDIDVQFMMSNAPYPPNRVELYISQPSVPSPTSTREEVETVE 123

Query: 123 GEKRVTHDE----CRVTNEETCINMNDDNDEDDH--EFFYGTEEVPEFFTTLDMTVINSL 182
            E  V  DE       TN+E  + M+DD+ + D     FYG  EVPE FT +D+  + + 
Sbjct: 124 LESHVVEDEHYDPTIATNDEE-VKMDDDDIDLDQLSSQFYGVHEVPETFTEIDLNEMTTE 183

Query: 183 PDSGI-ELEAREPDGLMKGMMFETKKDLKNAVKSYSVLHHQHFNVIEEK 216
           PDS   E      D L+KGM+F +K DLKN V++YS++ HQ+F VIE K
Sbjct: 184 PDSTTGEDSNMGSDSLLKGMIFNSKLDLKNVVENYSIIRHQNFEVIELK 230

[Close]
BLAST of Sed0018533 vs. NCBI nr
Match: RVW52006.1 (hypothetical protein CK203_068088 [Vitis vinifera])

HSP 1 Score: 79.0 bits (193), Expect = 6.8e-11
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 206 HQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAG 256
           H + N++ +KGRP SSRIRNEMDW+EP VK  CG+C  EGHNRRKCP+ G
Sbjct: 738 HPNPNLVRDKGRPRSSRIRNEMDWREPSVKLRCGLCKQEGHNRRKCPNRG 787

[Close]
BLAST of Sed0018533 vs. NCBI nr
Match: RVX19406.1 (hypothetical protein CK203_008540 [Vitis vinifera])

HSP 1 Score: 79.0 bits (193), Expect = 6.8e-11
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 206 HQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAG 256
           H + N++ +KGRP SSRIRNEMDW+EP VK  CG+C  EGHNRRKCP+ G
Sbjct: 711 HPNPNLVRDKGRPRSSRIRNEMDWREPSVKLRCGLCKQEGHNRRKCPNRG 760

[Close]
BLAST of Sed0018533 vs. NCBI nr
Match: TYK18693.1 (hypothetical protein E5676_scaffold481G00410 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 5.8e-10
Identity = 47/137 (34.31%), Postives = 72/137 (52.55%), Query Frame = 0 

Query: 92  APPLPHTIELYVSQIYMDT------------TVGGEKRVTHDECRVTNEETCINMNDDND 151
           APPLPH +ELY+SQ  + +            T   E+    D    TN E     +DD+D
Sbjct: 4   APPLPHIVELYISQPNLSSSAPIIEETNEFKTCNNEQYDCFDPTIATNVEVAEVDDDDSD 63

Query: 152 EDDH-EFFYGTEEVPEFFTTLDMTVINSLPDSGIELEAREPDGLMKGMMFETKKDLKNAV 211
            D      +G  +VPE F  +D+  +NS  D+ ++ E    + LM  M+F +K++LKN V
Sbjct: 64  IDQPLAELFGVHDVPEAFNHIDLNEMNSGFDNNLDEENLGSEHLMVDMLFNSKEELKNQV 123

Query: 212 KSYSVLHHQHFNVIEEK 216
           K Y+++ HQ F V++ K
Sbjct: 124 KRYTIMQHQDFEVLKPK 140

[Close]
BLAST of Sed0018533 vs. NCBI nr
Match: CAN72555.1 (hypothetical protein VITISV_015793 [Vitis vinifera])

HSP 1 Score: 75.5 bits (184), Expect = 7.6e-10
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 206 HQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAGAQ 258
           H +  ++ +KGRP SSRIRNEMDW+EP VK  CG+C  EGHN RKCP+ G +
Sbjct: 30  HPNPTLVRDKGRPRSSRIRNEMDWREPSVKVRCGLCKQEGHNHRKCPNRGEE 81

[Close]
BLAST of Sed0018533 vs. ExPASy TrEMBL
Match: A0A438KDW5 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_008540 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.3e-11
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 206 HQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAG 256
           H + N++ +KGRP SSRIRNEMDW+EP VK  CG+C  EGHNRRKCP+ G
Sbjct: 711 HPNPNLVRDKGRPRSSRIRNEMDWREPSVKLRCGLCKQEGHNRRKCPNRG 760

[Close]
BLAST of Sed0018533 vs. ExPASy TrEMBL
Match: A0A438EWG2 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_068088 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.3e-11
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 206 HQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAG 256
           H + N++ +KGRP SSRIRNEMDW+EP VK  CG+C  EGHNRRKCP+ G
Sbjct: 738 HPNPNLVRDKGRPRSSRIRNEMDWREPSVKLRCGLCKQEGHNRRKCPNRG 787

[Close]
BLAST of Sed0018533 vs. ExPASy TrEMBL
Match: A0A5D3D569 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00410 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.8e-10
Identity = 47/137 (34.31%), Postives = 72/137 (52.55%), Query Frame = 0 

Query: 92  APPLPHTIELYVSQIYMDT------------TVGGEKRVTHDECRVTNEETCINMNDDND 151
           APPLPH +ELY+SQ  + +            T   E+    D    TN E     +DD+D
Sbjct: 4   APPLPHIVELYISQPNLSSSAPIIEETNEFKTCNNEQYDCFDPTIATNVEVAEVDDDDSD 63

Query: 152 EDDH-EFFYGTEEVPEFFTTLDMTVINSLPDSGIELEAREPDGLMKGMMFETKKDLKNAV 211
            D      +G  +VPE F  +D+  +NS  D+ ++ E    + LM  M+F +K++LKN V
Sbjct: 64  IDQPLAELFGVHDVPEAFNHIDLNEMNSGFDNNLDEENLGSEHLMVDMLFNSKEELKNQV 123

Query: 212 KSYSVLHHQHFNVIEEK 216
           K Y+++ HQ F V++ K
Sbjct: 124 KRYTIMQHQDFEVLKPK 140

[Close]
BLAST of Sed0018533 vs. ExPASy TrEMBL
Match: A5BP71 (PMD domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_015793 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.7e-10
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 206 HQHFNVIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAGAQ 258
           H +  ++ +KGRP SSRIRNEMDW+EP VK  CG+C  EGHN RKCP+ G +
Sbjct: 30  HPNPTLVRDKGRPRSSRIRNEMDWREPSVKVRCGLCKQEGHNHRKCPNRGEE 81

[Close]
BLAST of Sed0018533 vs. ExPASy TrEMBL
Match: A0A438HTP0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_044024 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.2e-10
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 211 VIEEKGRPCSSRIRNEMDWKEPIVKHNCGICGIEGHNRRKCPHAGAQ 258
           ++ +KGRP SSRIRNEMDW+EP VK  CG+C  EGHN RKCP+ G +
Sbjct: 35  LVRDKGRPRSSRIRNEMDWREPSVKVRCGLCKQEGHNHRKCPNRGEE 81

The following BLAST results are available for this feature:
BLAST of Sed0018533 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038877923.12.1e-2837.99uncharacterized protein LOC120070133 [Benincasa hispida][more]
RVW52006.16.8e-1166.00hypothetical protein CK203_068088 [Vitis vinifera][more]
RVX19406.16.8e-1166.00hypothetical protein CK203_008540 [Vitis vinifera][more]
TYK18693.15.8e-1034.31hypothetical protein E5676_scaffold481G00410 [Cucumis melo var. makuwa][more]
CAN72555.17.6e-1059.62hypothetical protein VITISV_015793 [Vitis vinifera][more]
BLAST of Sed0018533 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0018533 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A438KDW53.3e-1166.00SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_008540 P... [more]
A0A438EWG23.3e-1166.00SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_068088 P... [more]
A0A5D3D5692.8e-1034.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A5BP713.7e-1059.62PMD domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_015793 PE=4 S... [more]
A0A438HTP08.2e-1063.83Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_044024 PE=4 SV=1[more]
BLAST of Sed0018533 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0018533.1Sed0018533.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding