Sed0018360 (gene) Chayote v1

Overview
NameSed0018360
Typegene
OrganismSechium edule (Chayote v1)
Description30S ribosomal protein S16, chloroplastic
LocationContig00347: 45730 .. 46818 (+)
RNA-Seq ExpressionSed0018360
SyntenySed0018360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCAACGTGCGACTTGAAGGACATGATCCACTGTGGATTCTTACACCCACCATTTTATATTATATAGGAATGAAGATGCTCTTGACTCGACATCGTTTGTTCTGTTCCACTAGAACCCTCATTTTTTGAGGGTTTTGATGTAAATAGTACATGATGGAGCTCGAGTATAAAGTATGGATTCATTTATCAAGGGCAGAGATCTAGGGTTAGTGTCAATCAATAAGTTCAAACTACTTGTAAGTATATGTTCGGTATAGAAATCGAAAGGATCCACCTGACCAAGTTGCAAATTCAAACGTCAAATTTGATCAAAAGTGTATCACGCGAGAATCCAGTATTTATATGATTCTTTGATAAAAAGAAATCACAAAAAATGGTATGTTGCTGCCATTTTGAAACGATTAAAGATCACCGAAGTAATGTCTAAACCCAATGATTCAAGGCAAGAATACAGGATCCGAAACAAGGAAAAATCTTTTTCAATTGTCTCCATAACTAAACTAGATGAGAATGAAGAATCGAAATAGATTCCGAAAGGAGACAGGCAAAAATCAAGGGGTTCGAGACCACTCAATAAATGAAATGCTTAAGCTTAAGGGTTGTTTTCCGTTGAGTGAGAGTTATCCAACTTGAGTTAGGGGGATAAGAATGAGTTTTTTTTTTTCAAAAAAGAATAAGAAAAAAGTATTTAAATCATAGTCTAATTGATTTAATAATCTATGGATCCATTTGACATTAATTAGAATTCTATACATAACTTTGAATTTCCTCGAGCCGTACGAGGAGAAAACTTCTTATACGGTTCTAGGGGGGGTATTGTTAATTTATATCTATCCCAATGAGCCGTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTTGTAAAGTGGGTTTTTATGATCCGATAAAGAATAAAACCTATTTAAATGTTCCTGCGATTATATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGGGTTTTTACGGAACTTCACCTTAATCAATAA

mRNA sequence

ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCAACCCGTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTTGTAAAGTGGGTTTTTATGATCCGATAAAGAATAAAACCTATTTAAATGTTCCTGCGATTATATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGGGTTTTTACGGAACTTCACCTTAATCAATAA

Coding sequence (CDS)

ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCAACCCGTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTTGTAAAGTGGGTTTTTATGATCCGATAAAGAATAAAACCTATTTAAATGTTCCTGCGATTATATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGGGTTTTTACGGAACTTCACCTTAATCAATAA

Protein sequence

MVKLRLKRCGRKQPVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Homology
[Close]
BLAST of Sed0018360 vs. NCBI nr
Match: YP_009945400.1 (ribosomal protein S16 [Sechium edule] >QIT04115.1 ribosomal protein S16 [Sechium edule] >QOE55930.1 ribosomal protein S16 [Sechium edule])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 1  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKG 60
          MVKLRLKRCGRKQ  VYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKG
Sbjct: 1  MVKLRLKRCGRKQRAVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKG 60

Query: 61 AQPTGTVHDILKKAGVFTELHLNQ 84
          AQPTGTVHDILKKAGVFTELHLNQ
Sbjct: 61 AQPTGTVHDILKKAGVFTELHLNQ 84

[Close]
BLAST of Sed0018360 vs. NCBI nr
Match: QKX48455.1 (ribosomal protein S16 [Luffa acutangula])

HSP 1 Score: 160.6 bits (405), Expect = 5.8e-36
Identity = 80/84 (95.24%), Postives = 81/84 (96.43%), Query Frame = 0 

Query: 1  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKG 60
          MVKLRLKRCGRKQ  VYRIIAIDVRSRREGRDL KVGFYDPIKNKTYLNVPAI+YFLEKG
Sbjct: 1  MVKLRLKRCGRKQRAVYRIIAIDVRSRREGRDLRKVGFYDPIKNKTYLNVPAILYFLEKG 60

Query: 61 AQPTGTVHDILKKAGVFTELHLNQ 84
          AQPTGTVHDILKKAGVFTELHLNQ
Sbjct: 61 AQPTGTVHDILKKAGVFTELHLNQ 84

[Close]
BLAST of Sed0018360 vs. NCBI nr
Match: YP_009744559.1 (ribosomal protein S16 [Potaninia mongolica] >ARC98955.1 ribosomal protein S16 [Potaninia mongolica] >QIF10484.1 ribosomal protein S16 [Potaninia mongolica])

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 75/83 (90.36%), Postives = 80/83 (96.39%), Query Frame = 0 

Query: 1  MVKLRLKRCGRKQPVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGA 60
          MVKLRLKRCGRKQ +YRI+AIDVR+RREGRDL KVGFYDPIKN+ YLNVPAI+YFLEKGA
Sbjct: 1  MVKLRLKRCGRKQAIYRIVAIDVRARREGRDLRKVGFYDPIKNQIYLNVPAILYFLEKGA 60

Query: 61 QPTGTVHDILKKAGVFTELHLNQ 84
          QPTGTVHDILKKAGVFTELHLNQ
Sbjct: 61 QPTGTVHDILKKAGVFTELHLNQ 83

[Close]
BLAST of Sed0018360 vs. NCBI nr
Match: YP_009004027.1 (ribosomal protein S16 [Cucumis hystrix] >AHJ61369.1 ribosomal protein S16 [Cucumis hystrix] >AVE15313.1 ribosomal protein S16 [Cucumis sativus var. sativus] >QDK99929.1 ribosomal protein S16 [Siraitia grosvenorii])

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0 

Query: 1  MVKLRLKRCGRKQPVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGA 60
          MVKLRLKRCGRKQ VYRIIAIDVRSRREGRDL KVGFYDPIKN+TYLNVPAI+YFLEKGA
Sbjct: 1  MVKLRLKRCGRKQ-VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGA 60

Query: 61 QPTGTVHDILKKAGVFTELHLNQ 84
          QPTGTVHDILKKAGVFTELHLNQ
Sbjct: 61 QPTGTVHDILKKAGVFTELHLNQ 82

[Close]
BLAST of Sed0018360 vs. NCBI nr
Match: YP_009674373.1 (ribosomal protein S16 [Siraitia grosvenorii] >YP_009751804.1 ribosomal protein S16 [Indofevillea khasiana] >YP_009752141.1 ribosomal protein S16 [Linnaeosicyos amara] >YP_009752225.1 ribosomal protein S16 [Trichosanthes baviensis] >YP_009752309.1 ribosomal protein S16 [Bryonia marmorata] >YP_009752563.1 ribosomal protein S16 [Trichosanthes homophylla] >YP_009752817.1 ribosomal protein S16 [Baijiania yunnanensis] >YP_009753156.1 ribosomal protein S16 [Trichosanthes truncata] >YP_009753240.1 ribosomal protein S16 [Nothoalsomitra suberosa] >YP_009753771.1 ribosomal protein S16 [Trichosanthes pilosa] >YP_010119716.1 ribosomal protein S16 [Hemsleya zhejiangensis] >YP_247581.1 ribosomal protein S16 [Cucumis sativus] >AHM88696.1 ribosomal protein S16 [Lagenaria siceraria] >ALF03283.1 ribosomal protein S16 [Cucumis sativus var. hardwickii] >QIT04032.1 ribosomal protein S16 [Luffa aegyptiaca] >QIT05044.1 ribosomal protein S16 [Trichosanthes kirilowii] >QJD26627.1 ribosomal protein S16 [Trichosanthes rosthornii] >QSQ72292.1 ribosomal protein S16 [Benincasa hispida] >QZL38575.1 ribosomal protein S16 [Citrullus naudinianus] >QZL38663.1 ribosomal protein S16 [Citrullus ecirrhosus])

HSP 1 Score: 159.1 bits (401), Expect = 1.7e-35
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 0 

Query: 1  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKG 60
          MVKLRLKRCGRKQ  VYRIIAIDVRSRREGRDL KVGFYDPIKN+TYLNVPAI+YFLEKG
Sbjct: 1  MVKLRLKRCGRKQRAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKG 60

Query: 61 AQPTGTVHDILKKAGVFTELHLNQ 84
          AQPTGTVHDILKKAGVFTELHLNQ
Sbjct: 61 AQPTGTVHDILKKAGVFTELHLNQ 84

[Close]
BLAST of Sed0018360 vs. ExPASy Swiss-Prot
Match: Q2QDA6 (30S ribosomal protein S16, chloroplastic OS=Cucumis sativus OX=3659 GN=rps16 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.9e-38
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 0 

Query: 1  MVKLRLKRCGRKQ--PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEK 60
          MVKLRLKRCGRKQ   VYRIIAIDVRSRREGRDL KVGFYDPIKN+TYLNVPAI+YFLEK
Sbjct: 1  MVKLRLKRCGRKQRAAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEK 60

Query: 61 GAQPTGTVHDILKKAGVFTELHLNQ 84
          GAQPTGTVHDILKKAGVFTELHLNQ
Sbjct: 61 GAQPTGTVHDILKKAGVFTELHLNQ 85

[Close]
BLAST of Sed0018360 vs. ExPASy Swiss-Prot
Match: Q2L8Y7 (30S ribosomal protein S16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps16 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 7.8e-36
Identity = 75/84 (89.29%), Postives = 78/84 (92.86%), Query Frame = 0 

Query: 1  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKG 60
          MVKLRLKRCGRKQ  VYRI+AIDVRSRREGRDL KVGFYDPI N+TYLNVPAI+YFLEKG
Sbjct: 1  MVKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLRKVGFYDPINNQTYLNVPAILYFLEKG 60

Query: 61 AQPTGTVHDILKKAGVFTELHLNQ 84
          AQPT TVHDILKKAGVFTEL LNQ
Sbjct: 61 AQPTATVHDILKKAGVFTELTLNQ 84

[Close]
BLAST of Sed0018360 vs. ExPASy Swiss-Prot
Match: A0ZZ17 (30S ribosomal protein S16, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps16 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-35
Identity = 74/84 (88.10%), Postives = 77/84 (91.67%), Query Frame = 0 

Query: 1  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKG 60
          MVKLRLKRCGRKQ  VYRI+ IDVRSRREGRDL KVGFYDPI N+TYLNVPAI+YFLEKG
Sbjct: 1  MVKLRLKRCGRKQRAVYRIVVIDVRSRREGRDLRKVGFYDPINNQTYLNVPAILYFLEKG 60

Query: 61 AQPTGTVHDILKKAGVFTELHLNQ 84
          AQPT TVHDILKKAGVFTEL LNQ
Sbjct: 61 AQPTATVHDILKKAGVFTELTLNQ 84

[Close]
BLAST of Sed0018360 vs. ExPASy Swiss-Prot
Match: Q9MTQ0 (30S ribosomal protein S16, chloroplastic OS=Oenothera elata subsp. hookeri OX=85636 GN=rps16 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.5e-34
Identity = 71/84 (84.52%), Postives = 77/84 (91.67%), Query Frame = 0 

Query: 1  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKG 60
          MVKLRLKRCG+KQ  VYRI+AIDVRSRREGRDL KVGFYDPI NKTYL++P I+YFLEKG
Sbjct: 1  MVKLRLKRCGKKQRAVYRIVAIDVRSRREGRDLWKVGFYDPINNKTYLDIPGILYFLEKG 60

Query: 61 AQPTGTVHDILKKAGVFTELHLNQ 84
          AQPTGTV+DILKKAGVFTE  LNQ
Sbjct: 61 AQPTGTVYDILKKAGVFTEFSLNQ 84

[Close]
BLAST of Sed0018360 vs. ExPASy Swiss-Prot
Match: Q0ZJ38 (30S ribosomal protein S16, chloroplastic OS=Vitis vinifera OX=29760 GN=rps16 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.5e-34
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 0 

Query: 1  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKG 60
          MVKLRLKRCGRKQ  VYRI+AID RSRREGRDL KVGFYDPIKN+TY NVPAI+YFLEKG
Sbjct: 1  MVKLRLKRCGRKQRAVYRIVAIDARSRREGRDLRKVGFYDPIKNQTYSNVPAILYFLEKG 60

Query: 61 AQPTGTVHDILKKAGVFTELHLNQ 84
          AQPTGTVHDI KKA VFTEL LNQ
Sbjct: 61 AQPTGTVHDISKKAEVFTELRLNQ 84

[Close]
BLAST of Sed0018360 vs. ExPASy TrEMBL
Match: A0A6H0EQH4 (30S ribosomal protein S16, chloroplastic OS=Sechium edule OX=184140 GN=rps16 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.6e-38
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 1  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKG 60
          MVKLRLKRCGRKQ  VYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKG
Sbjct: 1  MVKLRLKRCGRKQRAVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKG 60

Query: 61 AQPTGTVHDILKKAGVFTELHLNQ 84
          AQPTGTVHDILKKAGVFTELHLNQ
Sbjct: 61 AQPTGTVHDILKKAGVFTELHLNQ 84

[Close]
BLAST of Sed0018360 vs. ExPASy TrEMBL
Match: A0A7D5CPP0 (30S ribosomal protein S16, chloroplastic OS=Luffa acutangula OX=56866 GN=rps16 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.8e-36
Identity = 80/84 (95.24%), Postives = 81/84 (96.43%), Query Frame = 0 

Query: 1  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKG 60
          MVKLRLKRCGRKQ  VYRIIAIDVRSRREGRDL KVGFYDPIKNKTYLNVPAI+YFLEKG
Sbjct: 1  MVKLRLKRCGRKQRAVYRIIAIDVRSRREGRDLRKVGFYDPIKNKTYLNVPAILYFLEKG 60

Query: 61 AQPTGTVHDILKKAGVFTELHLNQ 84
          AQPTGTVHDILKKAGVFTELHLNQ
Sbjct: 61 AQPTGTVHDILKKAGVFTELHLNQ 84

[Close]
BLAST of Sed0018360 vs. ExPASy TrEMBL
Match: A0A1V0IR61 (Ribosomal protein S16 OS=Potaninia mongolica OX=393623 GN=rps16 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.2e-36
Identity = 75/83 (90.36%), Postives = 80/83 (96.39%), Query Frame = 0 

Query: 1  MVKLRLKRCGRKQPVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGA 60
          MVKLRLKRCGRKQ +YRI+AIDVR+RREGRDL KVGFYDPIKN+ YLNVPAI+YFLEKGA
Sbjct: 1  MVKLRLKRCGRKQAIYRIVAIDVRARREGRDLRKVGFYDPIKNQIYLNVPAILYFLEKGA 60

Query: 61 QPTGTVHDILKKAGVFTELHLNQ 84
          QPTGTVHDILKKAGVFTELHLNQ
Sbjct: 61 QPTGTVHDILKKAGVFTELHLNQ 83

[Close]
BLAST of Sed0018360 vs. ExPASy TrEMBL
Match: W8E1Y8 (Ribosomal protein S16 OS=Cucumis hystrix OX=396994 GN=rps16 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.2e-36
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0 

Query: 1  MVKLRLKRCGRKQPVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGA 60
          MVKLRLKRCGRKQ VYRIIAIDVRSRREGRDL KVGFYDPIKN+TYLNVPAI+YFLEKGA
Sbjct: 1  MVKLRLKRCGRKQ-VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGA 60

Query: 61 QPTGTVHDILKKAGVFTELHLNQ 84
          QPTGTVHDILKKAGVFTELHLNQ
Sbjct: 61 QPTGTVHDILKKAGVFTELHLNQ 82

[Close]
BLAST of Sed0018360 vs. ExPASy TrEMBL
Match: A0A343UM14 (30S ribosomal protein S16, chloroplastic OS=Cucumis sativus var. sativus OX=869827 GN=rps16 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.2e-36
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0 

Query: 1  MVKLRLKRCGRKQPVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKGA 60
          MVKLRLKRCGRKQ VYRIIAIDVRSRREGRDL KVGFYDPIKN+TYLNVPAI+YFLEKGA
Sbjct: 1  MVKLRLKRCGRKQ-VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGA 60

Query: 61 QPTGTVHDILKKAGVFTELHLNQ 84
          QPTGTVHDILKKAGVFTELHLNQ
Sbjct: 61 QPTGTVHDILKKAGVFTELHLNQ 82

[Close]
BLAST of Sed0018360 vs. TAIR 10
Match: ATCG00050.1 (ribosomal protein S16 )

HSP 1 Score: 125.2 bits (313), Expect = 2.5e-29
Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = 0 

Query: 1  MVKLRLKRCGRKQ-PVYRIIAIDVRSRREGRDLCKVGFYDPIKNKTYLNVPAIIYFLEKG 60
          MVKLRLKRCGRKQ  VYRI+AIDVR RREGRDL KVGFYDPI N+T+LN+ AI+ FL+KG
Sbjct: 1  MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQTFLNLSAILDFLKKG 60

Query: 61 AQPTGTVHDILKKAGVFTE 79
          AQPT T HDI KKAG+FTE
Sbjct: 61 AQPTRTAHDISKKAGIFTE 79

[Close]
BLAST of Sed0018360 vs. TAIR 10
Match: AT4G34620.1 (small subunit ribosomal protein 16 )

HSP 1 Score: 65.5 bits (158), Expect = 2.4e-11
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 0 

Query: 2  VKLRLKRCGRK-QPVYRIIAIDVRSRREGRDLCKVGFYDPIKNK-----TYLNVPAIIYF 61
          VK+RL R G K +P YR++  D +SRR+G+ +  +GFYDP++ K       L    I Y+
Sbjct: 3  VKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIKYW 62

Query: 62 LEKGAQPTGTVHDILKKAGV 76
          L  GAQPT TV  +L +AG+
Sbjct: 63 LSVGAQPTDTVESMLFRAGL 82

[Close]
BLAST of Sed0018360 vs. TAIR 10
Match: AT5G56940.1 (Ribosomal protein S16 family protein )

HSP 1 Score: 50.1 bits (118), Expect = 1.0e-06
Identity = 27/81 (33.33%), Postives = 49/81 (60.49%), Query Frame = 0 

Query: 1  MVKLRLKRCG-RKQPVYRIIAIDVRSRREGRDLCKVGFYDPIK-----NKTYLNVPAIIY 60
          +V++RL R G + +P +R++A D RS R+G+ L  +G+++P+       +  L    I Y
Sbjct: 2  VVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIKY 61

Query: 61 FLEKGAQPTGTVHDILKKAGV 76
          +L  GAQP+  V  +L ++G+
Sbjct: 62 WLSVGAQPSDPVQRLLFRSGL 82

The following BLAST results are available for this feature:
BLAST of Sed0018360 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009945400.11.4e-3797.62ribosomal protein S16 [Sechium edule] >QIT04115.1 ribosomal protein S16 [Sechium... [more]
QKX48455.15.8e-3695.24ribosomal protein S16 [Luffa acutangula][more]
YP_009744559.11.3e-3590.36ribosomal protein S16 [Potaninia mongolica] >ARC98955.1 ribosomal protein S16 [P... [more]
YP_009004027.11.3e-3595.18ribosomal protein S16 [Cucumis hystrix] >AHJ61369.1 ribosomal protein S16 [Cucum... [more]
YP_009674373.11.7e-3594.05ribosomal protein S16 [Siraitia grosvenorii] >YP_009751804.1 ribosomal protein S... [more]
BLAST of Sed0018360 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q2QDA62.9e-3892.9430S ribosomal protein S16, chloroplastic OS=Cucumis sativus OX=3659 GN=rps16 PE=... [more]
Q2L8Y77.8e-3689.2930S ribosomal protein S16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps16 ... [more]
A0ZZ172.3e-3588.1030S ribosomal protein S16, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1... [more]
Q9MTQ01.5e-3484.5230S ribosomal protein S16, chloroplastic OS=Oenothera elata subsp. hookeri OX=85... [more]
Q0ZJ381.5e-3486.9030S ribosomal protein S16, chloroplastic OS=Vitis vinifera OX=29760 GN=rps16 PE=... [more]
BLAST of Sed0018360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6H0EQH46.6e-3897.6230S ribosomal protein S16, chloroplastic OS=Sechium edule OX=184140 GN=rps16 PE=... [more]
A0A7D5CPP02.8e-3695.2430S ribosomal protein S16, chloroplastic OS=Luffa acutangula OX=56866 GN=rps16 P... [more]
A0A1V0IR616.2e-3690.36Ribosomal protein S16 OS=Potaninia mongolica OX=393623 GN=rps16 PE=3 SV=1[more]
W8E1Y86.2e-3695.18Ribosomal protein S16 OS=Cucumis hystrix OX=396994 GN=rps16 PE=3 SV=1[more]
A0A343UM146.2e-3695.1830S ribosomal protein S16, chloroplastic OS=Cucumis sativus var. sativus OX=8698... [more]
BLAST of Sed0018360 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00050.12.5e-2978.48ribosomal protein S16 [more]
AT4G34620.12.4e-1143.75small subunit ribosomal protein 16 [more]
AT5G56940.11.0e-0633.33Ribosomal protein S16 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000307Ribosomal protein S16TIGRFAMTIGR00002TIGR00002coord: 2..76
e-value: 1.8E-28
score: 96.3
IPR000307Ribosomal protein S16PFAMPF00886Ribosomal_S16coord: 11..63
e-value: 2.1E-14
score: 53.3
IPR000307Ribosomal protein S16PANTHERPTHR1291930S RIBOSOMAL PROTEIN S16coord: 1..78
IPR000307Ribosomal protein S16HAMAPMF_00385Ribosomal_S16coord: 1..73
score: 20.499821
IPR023803Ribosomal protein S16 domain superfamilyGENE3D3.30.1320.10coord: 1..83
e-value: 5.3E-28
score: 98.5
IPR023803Ribosomal protein S16 domain superfamilySUPERFAMILY54565Ribosomal protein S16coord: 1..80
NoneNo IPR availablePANTHERPTHR12919:SF3830S RIBOSOMAL PROTEIN S16, CHLOROPLASTICcoord: 1..78
IPR020592Ribosomal protein S16, conserved sitePROSITEPS00732RIBOSOMAL_S16coord: 2..11

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0018360.1Sed0018360.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome