Sed0017787 (gene) Chayote v1

Overview
NameSed0017787
Typegene
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase subunit beta''
LocationContig00297: 174009 .. 177953 (+)
RNA-Seq ExpressionSed0017787
SyntenySed0017787
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGTCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATCATTTCTTGCTACGGAGCTCGTAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACTATCCGAGGGATTTCAGTAAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATCTATATGGGCCCGCGATGCATTGGCATTAGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATATCTATTCGTACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGAGGACCTGGTCAATTGGGAGAAGCCGTAGGTATTATTGCAGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTCCTTCTAATGGAAAAATCAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGTCATGGGCATCCTGCTTTTTTATGTTATATAGACTTGTCTGTAACTATTGAGAGTGAGGATATTATACATAACGTCACTATTCCACCAAAAAGTTTACTTTTAGTTCAAAATGATCAATATGTAGAATCAGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTCAATTTAAAAGAGAGGGTTCGAAAACATATTTATTCTGACTCAGAGGGAGAAATGCATTGGAGTACCGATGTGTACCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGTGGTTCGTGCGAATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTCTGTCGAAAGAAGATATATTTCTAGCCTTTCGGTAAATAATGATAAAGTGAGACATAAATTTTATGGTCCGGATCTCTATGGTAAAAACGAAAGCGGAATTCTTGATTATTCAGAACTTAATCCAATCCTATGTACGGGTCAATCTAATCTCACATATCCTGCTATTTTCCACGGTAATTTTGATTTATTGGCAAAGAGGCGAAGAAATGGATTCATCATTCAATTTGACTCACTTCAAGAACGAGAAAAAGAACTACCGACCACTTCCGGTATTTCGATTGAAATACCCATAAATGGATTTTTCGTAGAAATAGTATTCTTGCTTATTTCGATGATCCTCAATACAGAAGAAATAGTTCAGGAATTACTAAATATGGGACTATAGGGTGCATTCAATCCTCAAAAAGAGGATTTTTGATTGAGTATCGAGAGTCAAAGACTTTAAGCCGAAATACCAAATGCAAATGAAAGTAGATCTATTTTTTCATTCCCGAGGAAGTGCATATTTTACCTGAATCTTCTTCCATAATGGTACGGAACAATAGTATCATTGGAGTAGCTACGACTAACTTTAAGTATAAGAAGCCGAGTAGGCGGATTGGTCCGAGTGGAGAAAAAAAAAAAAAGGATTGAACTAAAAATATTTTCTGGAGATATAAATTTTCCTGGAGAGATGGATAAGATATCCCGACACAATGGCATCTTGATACCACCTGAAAGAGTAAAAAAAAATTCTAAGAAATCAAAATTGAAAAATTGGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAGCCGACGGTATAAATTTAGTAACACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGCTGTCAATTATATCCTTTATGAAAATGGCAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCAAAGAAGCCCGCGTTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCAAAATTTCCTACGAATAGACTTAGTGAAATGCGATACTTCGTATATCAGAAAAAGGAAAGATCCTTCAGGCTCAGGATTGATCTTTAATAATGAGTCAGATCGCACCAATATCAATCCATTTTTTCTATCTTTTTTCCAAGACAAGGGTTCCACAATCCTTTAGTAAAAATCAAGGAACTATTCGGACGTTGAGAAATAAAGAACGCCAATCTTTTATAATTTTGTCAGCATCGAATTGTTTGCAAATCGATTTATTCAACGATGTAAAAGATTTGAATGTCATAAAAGAATCAAGTAAAAAGGATCCTCTTGAAATTAGGAATTCGTTAGGCCCTTTAGGGGCGGCCCCTCAAATTGTGAATTTTTATTCATTTTATCAGTTAATAACTCATAATCCGATCTCCCTAACTAAATATTTGCAACTTGACAATTTAAAACAGACTTTTCAAGTAATTAAATATTATTTAATGGATGAAAACGGGGGAATTTTGAATTCCGATCCATCCAATAACATCGTTTTGAATACATTTAATTTAAATTGGCATTTTCTGCCTCATAATTATCACCAGAGTTATTGTGAAGAAACACCTCCAAGAATTAGCCTTGGACAGTTTTTTTTTGAAAATGTATGTATAGCCAAAAATAGACCACACCTAAAATCGGGTCAAATTATAATTGTTGAAGTTGATTCTGTAGTAATAAGATCAGCTAAGCCTTATTTGGCCACTTCAGGAGCAACTGTTCATCGCCATTATGGAGAAATCCTTTACGAAGGAGATACCTTAGTTACATTTATATATGAAAAATCACGATCTGGTGATATAACGCATGGTCTTCCAAAAGTGGAACAAGTATTAGAAGTGCGTTCGATTGATTCAATATCGATTAGCCTACAAAAAGAAATTGAGGTTGGAATGAGCGTATAACAAGAATTCTTGGAATTCCTTGGGAATTTTGATTGGTGCTGAACTAACTATAGTGCAAAGTCGTATCTCTTTGGTTAATAAGATCCAAAGGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATTGAAATTATTGTACGTCAAATAACATCAAAAGTGTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGATTGTTGCGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCAATCTGTTACCGAGCCGTATTATTGGGAATAACGAAAACATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGGTCTCAAAGAGAACGTTGTTCTAGGAGGAATGATACCCGTTGGTACCGGATTCAGAGAATTAGCGCACCGTTCGAGGCAACATAACAATATTCCTTTAGAAACCCCCCCAAAAAAAATTTTCGAGGGGGAAATAAGAGATATTTTGTTCCACCACAAAGAATTATTTGATTTTTGCATTTCAACGAATTTACATGATACATCCGAACAAGCATTTCTAGGATTTAATGATTCATAA

mRNA sequence

ATGGCTAGTCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATCATTTCTTGCTACGGAGCTCGTAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACTATCCGAGGGATTTCAGTAAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATCTATATGGGCCCGCGATGCATTGGCATTAGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATATCTATTCGTACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAAAGCCGTAGGTATTATTGCAGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTCCTTCTAATGGAAAAATCAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGTCATGGGCATCCTGCTTTTTTATGTTATATAGACTTGTCTGTAACTATTGAGAGTGAGGATATTATACATAACGTCACTATTCCACCAAAAAGTTTACTTTTAGTTCAAAATGATCAATATGTAGAATCAGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTCAATTTAAAAGAGAGGGTTCGAAAACATATTTATTCTGACTCAGAGGGAGAAATGCATTGGAGTACCGATGTGTACCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGTGGTTCGTGCGAATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTCTGTCGAAAGAAGATATATTTCTAGCCTTTCGGTAAATAATGATAAAGTGAGACATAAATTTTATGGTCCGGATCTCTATGGTAAAAACGAAAGCGGAATTCTTGATTATTCAGAACTTAATCCAATCCTATGTACGGGTCAATCTAATCTCACATATCCTGCTATTTTCCACGGTAATTTTGATTTATTGGCAAAGAGGCGAAGAAATGGATTCATCATTCAATTTGACTCACTTCAAGAACGAGAAAAAGAACTACCGACCACTTCCGGTATTTCGATTGAAATACCCATAAATGGATTTTTCGTAGAAATAGTATTCTTGCTTATTTCGATGATCCTCAATACAGAAGAAATACTACGACTAACTTTAAGTATAAGAAGCCGAGTAGGCGGATTGGTCCGAGTGGAGAAAAAAAAAAAAAGGATTGAACTAAAAATATTTTCTGGAGATATAAATTTTCCTGGAGAGATGGATAAGATATCCCGACACAATGGCATCTTGATACCACCTGAAAGAGTAAAAAAAAATTCTAAGAAATCAAAATTGAAAAATTGGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAGCCGACGGTATAAATTTAGTAACACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGCTGTCAATTATATCCTTTATGAAAATGGCAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCAAAGAAGCCCGCGTTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCAAAATTTCCTACGAATAGACTTAGTGAAATGCGATACTTCGTATATCAGAAAAAGGAAAGATCCTTCAGGCTCAGGATTGATCTTTAATAATGAGGTTCCACAATCCTTTAGTAAAAATCAAGGAACTATTCGGACGTTGAGAAATAAAGAACGCCAATCTTTTATAATTTTGTCAGCATCGAATTGTTTGCAAATCGATTTATTCAACGATGTAAAAGATTTGAATGTCATAAAAGAATCAAGTAAAAAGGATCCTCTTGAAATTAGGAATTCGTTAGGCCCTTTAGGGGCGGCCCCTCAAATTGTGAATTTTTATTCATTTTATCAGTTAATAACTCATAATCCGATCTCCCTAACTAAATATTTGCAACTTGACAATTTAAAACAGACTTTTCAAGTAATTAAATATTATTTAATGGATGAAAACGGGGGAATTTTGAATTCCGATCCATCCAATAACATCGTTTTGAATACATTTAATTTAAATTGGCATTTTCTGCCTCATAATTATCACCAGAGTTATTGTGAAGAAACACCTCCAAGAATTAGCCTTGGACAGTTTTTTTTTGAAAATGTATGTATAGCCAAAAATAGACCACACCTAAAATCGGGTCAAATTATAATTGTTGAAGTTGATTCTGTAGTAATAAGATCAGCTAAGCCTTATTTGGCCACTTCAGGAGCAACTGTTCATCGCCATTATGGAGAAATCCTTTACGAAGGAGATACCTTAGTTACATTTATATATGAAAAATCACGATCTGGTGATATAACGCATGGTCTTCCAAAAGTGGAACAAGTATTAGAAGTGCGTTCGATTGATTCAATATCGATTAGCCTACAAAAAGAAATTGAGGTTGGAATGAGCGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATTGAAATTATTGTACGTCAAATAACATCAAAAGTGTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGATTGTTGCGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCAATCTGTTACCGAGCCGTATTATTGGGAATAACGAAAACATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGGTCTCAAAGAGAACGTTGTTCTAGGAGGAATGATACCCGTTGGTACCGGATTCAGAGAATTAGCGCACCGTTCGAGGCAACATAACAATATTCCTTTAGAAACCCCCCCAAAAAAAATTTTCGAGGGGGAAATAAGAGATATTTTGTTCCACCACAAAGAATTATTTGATTTTTGCATTTCAACGAATTTACATGATACATCCGAACAAGCATTTCTAGGATTTAATGATTCATAA

Coding sequence (CDS)

ATGGCTAGTCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATCATTTCTTGCTACGGAGCTCGTAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACTATCCGAGGGATTTCAGTAAGTCCTGGAAATAGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATCTATATGGGCCCGCGATGCATTGGCATTAGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATATCTATTCGTACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAAAGCCGTAGGTATTATTGCAGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTCCTTCTAATGGAAAAATCAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGTCATGGGCATCCTGCTTTTTTATGTTATATAGACTTGTCTGTAACTATTGAGAGTGAGGATATTATACATAACGTCACTATTCCACCAAAAAGTTTACTTTTAGTTCAAAATGATCAATATGTAGAATCAGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTCAATTTAAAAGAGAGGGTTCGAAAACATATTTATTCTGACTCAGAGGGAGAAATGCATTGGAGTACCGATGTGTACCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGTGGTTCGTGCGAATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTCTGTCGAAAGAAGATATATTTCTAGCCTTTCGGTAAATAATGATAAAGTGAGACATAAATTTTATGGTCCGGATCTCTATGGTAAAAACGAAAGCGGAATTCTTGATTATTCAGAACTTAATCCAATCCTATGTACGGGTCAATCTAATCTCACATATCCTGCTATTTTCCACGGTAATTTTGATTTATTGGCAAAGAGGCGAAGAAATGGATTCATCATTCAATTTGACTCACTTCAAGAACGAGAAAAAGAACTACCGACCACTTCCGGTATTTCGATTGAAATACCCATAAATGGATTTTTCGTAGAAATAGTATTCTTGCTTATTTCGATGATCCTCAATACAGAAGAAATACTACGACTAACTTTAAGTATAAGAAGCCGAGTAGGCGGATTGGTCCGAGTGGAGAAAAAAAAAAAAAGGATTGAACTAAAAATATTTTCTGGAGATATAAATTTTCCTGGAGAGATGGATAAGATATCCCGACACAATGGCATCTTGATACCACCTGAAAGAGTAAAAAAAAATTCTAAGAAATCAAAATTGAAAAATTGGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAGCCGACGGTATAAATTTAGTAACACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGCTGTCAATTATATCCTTTATGAAAATGGCAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCAAAGAAGCCCGCGTTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCAAAATTTCCTACGAATAGACTTAGTGAAATGCGATACTTCGTATATCAGAAAAAGGAAAGATCCTTCAGGCTCAGGATTGATCTTTAATAATGAGGTTCCACAATCCTTTAGTAAAAATCAAGGAACTATTCGGACGTTGAGAAATAAAGAACGCCAATCTTTTATAATTTTGTCAGCATCGAATTGTTTGCAAATCGATTTATTCAACGATGTAAAAGATTTGAATGTCATAAAAGAATCAAGTAAAAAGGATCCTCTTGAAATTAGGAATTCGTTAGGCCCTTTAGGGGCGGCCCCTCAAATTGTGAATTTTTATTCATTTTATCAGTTAATAACTCATAATCCGATCTCCCTAACTAAATATTTGCAACTTGACAATTTAAAACAGACTTTTCAAGTAATTAAATATTATTTAATGGATGAAAACGGGGGAATTTTGAATTCCGATCCATCCAATAACATCGTTTTGAATACATTTAATTTAAATTGGCATTTTCTGCCTCATAATTATCACCAGAGTTATTGTGAAGAAACACCTCCAAGAATTAGCCTTGGACAGTTTTTTTTTGAAAATGTATGTATAGCCAAAAATAGACCACACCTAAAATCGGGTCAAATTATAATTGTTGAAGTTGATTCTGTAGTAATAAGATCAGCTAAGCCTTATTTGGCCACTTCAGGAGCAACTGTTCATCGCCATTATGGAGAAATCCTTTACGAAGGAGATACCTTAGTTACATTTATATATGAAAAATCACGATCTGGTGATATAACGCATGGTCTTCCAAAAGTGGAACAAGTATTAGAAGTGCGTTCGATTGATTCAATATCGATTAGCCTACAAAAAGAAATTGAGGTTGGAATGAGCGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATTGAAATTATTGTACGTCAAATAACATCAAAAGTGTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGATTGTTGCGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCAATCTGTTACCGAGCCGTATTATTGGGAATAACGAAAACATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGGTCTCAAAGAGAACGTTGTTCTAGGAGGAATGATACCCGTTGGTACCGGATTCAGAGAATTAGCGCACCGTTCGAGGCAACATAACAATATTCCTTTAGAAACCCCCCCAAAAAAAATTTTCGAGGGGGAAATAAGAGATATTTTGTTCCACCACAAAGAATTATTTGATTTTTGCATTTCAACGAATTTACATGATACATCCGAACAAGCATTTCTAGGATTTAATGATTCATAA

Protein sequence

MASQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRKAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRTRHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLYKDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQSNLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFFVEIVFLLISMILNTEEILRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMDKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKEARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNEVPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNSDPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIIIVEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVLEVRSIDSISISLQKEIEVGMSVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIPLETPPKKIFEGEIRDILFHHKELFDFCISTNLHDTSEQAFLGFNDS
Homology
[Close]
BLAST of Sed0017787 vs. NCBI nr
Match: YP_009945407.1 (RNA polymerase beta'' subunit [Sechium edule] >QOE55937.1 RNA polymerase beta'' subunit [Sechium edule])

HSP 1 Score: 2259.2 bits (5853), Expect = 0.0e+00
Identity = 1163/1315 (88.44%), Postives = 1172/1315 (89.13%), Query Frame = 0 

Query: 4    QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
            QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 77   QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 136

Query: 64   FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
            FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 137  FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 196

Query: 124  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
            AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 197  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 256

Query: 184  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
            IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR        
Sbjct: 257  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 316

Query: 244  ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
               +AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 317  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 376

Query: 304  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
            RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 377  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 436

Query: 364  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
            KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY
Sbjct: 437  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 496

Query: 424  KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
            KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS
Sbjct: 497  KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 556

Query: 484  NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFF------- 543
            NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPING F       
Sbjct: 557  NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGIFRRNSILA 616

Query: 544  --------------------------------------------------VEIVFLL--- 603
                                                              V++ F +   
Sbjct: 617  YFDDPQYRRNSSGITKYGTIGVHSILKKEDFLIEYRGVKDFKPKYQMQMKVDLFFFIPEE 676

Query: 604  -------ISMILNTEEIL----RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEM 663
                    S+++    I+    RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEM
Sbjct: 677  VHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEM 736

Query: 664  DKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 723
            DKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV
Sbjct: 737  DKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 796

Query: 724  TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 783
            TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE
Sbjct: 797  TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 856

Query: 784  ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE-------------- 843
            ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE              
Sbjct: 857  ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYS 916

Query: 844  ---VPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEI 903
               VPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEI
Sbjct: 917  KTRVPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEI 976

Query: 904  RNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNS 963
            RNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNS
Sbjct: 977  RNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNS 1036

Query: 964  DPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIII 1023
            DPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIII
Sbjct: 1037 DPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIII 1096

Query: 1024 VEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVL 1083
            VEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVL
Sbjct: 1097 VEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVL 1156

Query: 1084 EVRSIDSISISLQKEIE-----------------VG----------------MSVYRSQG 1143
            EVRSIDSISISLQK IE                 +G                  VYRSQG
Sbjct: 1157 EVRSIDSISISLQKRIEGWNERITRILGIPWEFLIGAELTIVQSRISLVNKIQKVYRSQG 1216

Query: 1144 VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG 1187
            VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG
Sbjct: 1217 VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG 1276

[Close]
BLAST of Sed0017787 vs. NCBI nr
Match: QIT04123.1 (RNA polymerase beta'' subunit [Sechium edule])

HSP 1 Score: 2256.9 bits (5847), Expect = 0.0e+00
Identity = 1162/1315 (88.37%), Postives = 1171/1315 (89.05%), Query Frame = 0 

Query: 4    QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
            QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 73   QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 132

Query: 64   FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
            FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133  FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192

Query: 124  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
            AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 193  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 252

Query: 184  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
            IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR        
Sbjct: 253  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 312

Query: 244  ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
               +AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 313  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 372

Query: 304  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
            RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 373  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 432

Query: 364  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
            KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY
Sbjct: 433  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 492

Query: 424  KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
            KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS
Sbjct: 493  KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 552

Query: 484  NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFF------- 543
            NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPING F       
Sbjct: 553  NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGIFRRNSILA 612

Query: 544  --------------------------------------------------VEIVFLL--- 603
                                                              V++ F +   
Sbjct: 613  YFDDPQYRRNSSGITKYGTIGVHSILKKEDFLIEYRGVKDFKPKYQMQMKVDLFFFIPEE 672

Query: 604  -------ISMILNTEEIL----RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEM 663
                    S+++    I+    RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEM
Sbjct: 673  VHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEM 732

Query: 664  DKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 723
            DKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV
Sbjct: 733  DKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 792

Query: 724  TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 783
            TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSI E
Sbjct: 793  TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIXE 852

Query: 784  ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE-------------- 843
            ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE              
Sbjct: 853  ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYS 912

Query: 844  ---VPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEI 903
               VPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEI
Sbjct: 913  KTRVPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEI 972

Query: 904  RNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNS 963
            RNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNS
Sbjct: 973  RNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNS 1032

Query: 964  DPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIII 1023
            DPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIII
Sbjct: 1033 DPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIII 1092

Query: 1024 VEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVL 1083
            VEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVL
Sbjct: 1093 VEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVL 1152

Query: 1084 EVRSIDSISISLQKEIE-----------------VG----------------MSVYRSQG 1143
            EVRSIDSISISLQK IE                 +G                  VYRSQG
Sbjct: 1153 EVRSIDSISISLQKRIEGWNERITRILGIPWEFLIGAELTIVQSRISLVNKIQKVYRSQG 1212

Query: 1144 VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG 1187
            VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG
Sbjct: 1213 VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG 1272

[Close]
BLAST of Sed0017787 vs. NCBI nr
Match: YP_009751896.1 (RNA polymerase beta'' subunit [Cyclanthera pedata] >QIT04714.1 RNA polymerase beta'' subunit [Cyclanthera pedata])

HSP 1 Score: 2178.3 bits (5643), Expect = 0.0e+00
Identity = 1127/1312 (85.90%), Postives = 1144/1312 (87.20%), Query Frame = 0 

Query: 4    QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
            QDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 73   QDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 132

Query: 64   FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
            FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133  FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192

Query: 124  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
            AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 193  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 252

Query: 184  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
            IY GPRCIGIRNQDIGIGLINR ITFQTQPISIRTPFTCRSTSWICRLCYGR        
Sbjct: 253  IYTGPRCIGIRNQDIGIGLINRLITFQTQPISIRTPFTCRSTSWICRLCYGRSPTQGDLV 312

Query: 244  ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
               +AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 313  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 372

Query: 304  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
            RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 373  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 432

Query: 364  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
            KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY
Sbjct: 433  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 492

Query: 424  KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
            KDQDQINVHSLSVERRYISSLSVNNDKVR KFYGP+L GKNESGIL YSELNPILCTGQS
Sbjct: 493  KDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGPNLSGKNESGILYYSELNPILCTGQS 552

Query: 484  NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFFVEIVFLL 543
            NLTYPAIFHGN DLLAKRRRNGFII+FDSLQEREKELP TSGI IEIPING F     L 
Sbjct: 553  NLTYPAIFHGNSDLLAKRRRNGFIIEFDSLQEREKELPPTSGIWIEIPINGIFRRNSILA 612

Query: 544  ---------------------ISMILNTEEIL---------------------------- 603
                                 +  IL  E+++                            
Sbjct: 613  YFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMKVDRFFFIPEEVHI 672

Query: 604  -------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMDKI 663
                               RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDI+FPGEMDKI
Sbjct: 673  LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKI 732

Query: 664  SRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF 723
            SRHNGILIPPERVKK+SKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF
Sbjct: 733  SRHNGILIPPERVKKHSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF 792

Query: 724  PQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKEARV 783
            PQDLLQERDNLELR VNYILYENGKPIRGISGTSIQLVRTCLLLNWD+DKKSSSI+EARV
Sbjct: 793  PQDLLQERDNLELRVVNYILYENGKPIRGISGTSIQLVRTCLLLNWDQDKKSSSIEEARV 852

Query: 784  SFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE----------------- 843
            SFVEVSTNGLV NFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE                 
Sbjct: 853  SFVEVSTNGLVLNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYSKTR 912

Query: 844  VPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEIRNS 903
            V QS S+NQGTIRTLRNKERQS IILSASNCLQIDLFNDVKD NVIKESSKKDPLEIRNS
Sbjct: 913  VAQSLSQNQGTIRTLRNKERQSLIILSASNCLQIDLFNDVKDYNVIKESSKKDPLEIRNS 972

Query: 904  LGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNSDPS 963
             GPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNL QTFQVIKYYL+DENGGILNSDPS
Sbjct: 973  FGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLTQTFQVIKYYLIDENGGILNSDPS 1032

Query: 964  NNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIIIVEV 1023
            +NIVLNTFNLNWHFL HNYH SYCEETP RISLGQFFFENVCIAKNRPHLKSGQIIIV+V
Sbjct: 1033 SNIVLNTFNLNWHFLYHNYHHSYCEETPTRISLGQFFFENVCIAKNRPHLKSGQIIIVQV 1092

Query: 1024 DSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVLEVR 1083
            DSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDIT GLPKVEQVLEVR
Sbjct: 1093 DSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1152

Query: 1084 SIDSISISLQKEIE-----------------VG----------------MSVYRSQGVEI 1143
            SIDSISISLQK IE                 +G                  VYRSQGVEI
Sbjct: 1153 SIDSISISLQKRIEGWNERITKILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEI 1212

Query: 1144 HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK 1187
            HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK
Sbjct: 1213 HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK 1272

[Close]
BLAST of Sed0017787 vs. NCBI nr
Match: QWQ50133.1 (RNA polymerase beta'' subunit [Cyclanthera pedata])

HSP 1 Score: 2178.3 bits (5643), Expect = 0.0e+00
Identity = 1127/1312 (85.90%), Postives = 1144/1312 (87.20%), Query Frame = 0 

Query: 4    QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
            QDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 119  QDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 178

Query: 64   FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
            FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 179  FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 238

Query: 124  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
            AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 239  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 298

Query: 184  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
            IY GPRCIGIRNQDIGIGLINR ITFQTQPISIRTPFTCRSTSWICRLCYGR        
Sbjct: 299  IYTGPRCIGIRNQDIGIGLINRLITFQTQPISIRTPFTCRSTSWICRLCYGRSPTQGDLV 358

Query: 244  ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
               +AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 359  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 418

Query: 304  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
            RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 419  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 478

Query: 364  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
            KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY
Sbjct: 479  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 538

Query: 424  KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
            KDQDQINVHSLSVERRYISSLSVNNDKVR KFYGP+L GKNESGIL YSELNPILCTGQS
Sbjct: 539  KDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGPNLSGKNESGILYYSELNPILCTGQS 598

Query: 484  NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFFVEIVFLL 543
            NLTYPAIFHGN DLLAKRRRNGFII+FDSLQEREKELP TSGI IEIPING F     L 
Sbjct: 599  NLTYPAIFHGNSDLLAKRRRNGFIIEFDSLQEREKELPPTSGIWIEIPINGIFRRNSILA 658

Query: 544  ---------------------ISMILNTEEIL---------------------------- 603
                                 +  IL  E+++                            
Sbjct: 659  YFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMKVDRFFFIPEEVHI 718

Query: 604  -------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMDKI 663
                               RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDI+FPGEMDKI
Sbjct: 719  LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKI 778

Query: 664  SRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF 723
            SRHNGILIPPERVKK+SKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF
Sbjct: 779  SRHNGILIPPERVKKHSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF 838

Query: 724  PQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKEARV 783
            PQDLLQERDNLELR VNYILYENGKPIRGISGTSIQLVRTCLLLNWD+DKKSSSI+EARV
Sbjct: 839  PQDLLQERDNLELRVVNYILYENGKPIRGISGTSIQLVRTCLLLNWDQDKKSSSIEEARV 898

Query: 784  SFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE----------------- 843
            SFVEVSTNGLV NFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE                 
Sbjct: 899  SFVEVSTNGLVLNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYSKTR 958

Query: 844  VPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEIRNS 903
            V QS S+NQGTIRTLRNKERQS IILSASNCLQIDLFNDVKD NVIKESSKKDPLEIRNS
Sbjct: 959  VAQSLSQNQGTIRTLRNKERQSLIILSASNCLQIDLFNDVKDYNVIKESSKKDPLEIRNS 1018

Query: 904  LGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNSDPS 963
             GPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNL QTFQVIKYYL+DENGGILNSDPS
Sbjct: 1019 FGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLTQTFQVIKYYLIDENGGILNSDPS 1078

Query: 964  NNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIIIVEV 1023
            +NIVLNTFNLNWHFL HNYH SYCEETP RISLGQFFFENVCIAKNRPHLKSGQIIIV+V
Sbjct: 1079 SNIVLNTFNLNWHFLYHNYHHSYCEETPTRISLGQFFFENVCIAKNRPHLKSGQIIIVQV 1138

Query: 1024 DSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVLEVR 1083
            DSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDIT GLPKVEQVLEVR
Sbjct: 1139 DSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1198

Query: 1084 SIDSISISLQKEIE-----------------VG----------------MSVYRSQGVEI 1143
            SIDSISISLQK IE                 +G                  VYRSQGVEI
Sbjct: 1199 SIDSISISLQKRIEGWNERITKILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEI 1258

Query: 1144 HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK 1187
            HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK
Sbjct: 1259 HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK 1318

[Close]
BLAST of Sed0017787 vs. NCBI nr
Match: QIT04040.1 (RNA polymerase beta'' subunit [Luffa aegyptiaca] >QKX48549.1 RNA polymerase beta'' subunit [Luffa aegyptiaca])

HSP 1 Score: 2174.8 bits (5634), Expect = 0.0e+00
Identity = 1127/1317 (85.57%), Postives = 1145/1317 (86.94%), Query Frame = 0 

Query: 4    QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
            QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 73   QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 132

Query: 64   FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
            FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133  FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192

Query: 124  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
            AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 193  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 252

Query: 184  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
            IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR        
Sbjct: 253  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 312

Query: 244  ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
               +AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 313  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 372

Query: 304  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
            RHGHPAFLCYIDL VTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 373  RHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 432

Query: 364  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
            KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSC CSVVPFSLY
Sbjct: 433  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLY 492

Query: 424  KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
            KDQDQINVHSLSVERRYISSLSVNNDKVR KFYGPDL GKNESGI DYSELNPILCTGQS
Sbjct: 493  KDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQS 552

Query: 484  NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFFVEIVFLL 543
            NLTYPAIFHGN DLLAKRRRNGFIIQF+SLQEREKELP  SGISIEIPING F     L 
Sbjct: 553  NLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRNSILA 612

Query: 544  ---------------------ISMILNTEEIL---------------------------- 603
                                 +  IL  E+++                            
Sbjct: 613  YFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEV 672

Query: 604  ---------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMD 663
                                 RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDI+FPGEMD
Sbjct: 673  HILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMD 732

Query: 664  KISRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 723
            KISRHNGILIPPERVKKNSKKS KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV
Sbjct: 733  KISRHNGILIPPERVKKNSKKSKKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 792

Query: 724  TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 783
            TLFPQDLLQERDNLELR VNYILY NGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSI+E
Sbjct: 793  TLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEE 852

Query: 784  ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE-------------- 843
            AR SFVEVSTNGLV+NFLRIDLVK DTSYIRKRKDPSGSGLIFNNE              
Sbjct: 853  ARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYS 912

Query: 844  ---VPQSFSKNQGTIRTL--RNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPL 903
               VPQS S+NQGTIRTL  RNKERQS IILSASNCLQ+DLFNDVKD NVIKESSKKDPL
Sbjct: 913  KTRVPQSLSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDYNVIKESSKKDPL 972

Query: 904  EIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGIL 963
            EIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDN KQTFQV+KYYLMDENGGIL
Sbjct: 973  EIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNFKQTFQVLKYYLMDENGGIL 1032

Query: 964  NSDPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQI 1023
            NSDP +NIV NTFNLNWHFL HNYH SYCEETP RISLGQFFFENVCIAKNRPHLKSGQI
Sbjct: 1033 NSDPCSNIVFNTFNLNWHFLHHNYHNSYCEETPTRISLGQFFFENVCIAKNRPHLKSGQI 1092

Query: 1024 IIVEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQ 1083
            IIV+VDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDIT GLPKVEQ
Sbjct: 1093 IIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQ 1152

Query: 1084 VLEVRSIDSISISLQKEIE-----------------VG----------------MSVYRS 1143
            VLEVRSIDSIS+SL+K IE                 +G                  VYRS
Sbjct: 1153 VLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRS 1212

Query: 1144 QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVL 1187
            QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVL
Sbjct: 1213 QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVL 1272

[Close]
BLAST of Sed0017787 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2128.6 bits (5514), Expect = 0.0e+00
Identity = 1109/1318 (84.14%), Postives = 1132/1318 (85.89%), Query Frame = 0 

Query: 4    QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
            QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 77   QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 136

Query: 64   FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
            FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 137  FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 196

Query: 124  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
            AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI VSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 197  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIFIQTLIGRVLADD 256

Query: 184  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
            IYMGPRCIG+RNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR        
Sbjct: 257  IYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 316

Query: 244  ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
               +AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 317  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 376

Query: 304  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
            RHGHPAFLCYIDL VTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 377  RHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 436

Query: 364  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
            KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSC CS+VPFSLY
Sbjct: 437  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSLVPFSLY 496

Query: 424  KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
            KDQDQINVHSL VERRYISSLSVNNDKV  KFYGPDL GKNE+GI DYSELNPILCTGQS
Sbjct: 497  KDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNENGIPDYSELNPILCTGQS 556

Query: 484  NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFFVEIVFLL 543
            NLTYPAIFHGN DLLAKRRRNGFIIQF+SLQEREKEL   SGISIEIPING F     L 
Sbjct: 557  NLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIPINGIFRRNSILA 616

Query: 544  ---------------------ISMILNTEEIL---------------------------- 603
                                 +  IL  E+++                            
Sbjct: 617  FFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEV 676

Query: 604  ---------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMD 663
                                 RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDI+FPGEMD
Sbjct: 677  HILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMD 736

Query: 664  KISRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 723
            KISRHNGILIPPERVKKNSKKS K KNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV
Sbjct: 737  KISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 796

Query: 724  TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 783
             LFPQDLLQERDNLELR  NYILY NGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSI++
Sbjct: 797  KLFPQDLLQERDNLELRVANYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIED 856

Query: 784  ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE-------------- 843
            AR SFVEVSTNGLV+NFLRIDL K DT+YIRKRKDPSGSGLIFNNE              
Sbjct: 857  ARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSGLIFNNESDRTNINPFFSIYS 916

Query: 844  ---VPQSFSKNQGTIRTL--RNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPL 903
               VPQS S+NQGTIRTL  RNKERQS IILSASNCLQIDLFNDVKD NVIKESSKKDPL
Sbjct: 917  KTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQIDLFNDVKDYNVIKESSKKDPL 976

Query: 904  -EIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGI 963
              IRNSLGPLGAAPQIVNFYSFY LITHNPISLTKYLQLDNLKQ FQV+KYYLMDENGGI
Sbjct: 977  ISIRNSLGPLGAAPQIVNFYSFYYLITHNPISLTKYLQLDNLKQIFQVLKYYLMDENGGI 1036

Query: 964  LNSDPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQ 1023
            LNSDP  NIV NTFNLNWHFL  NYH +YCEETP RISLGQFFFENVCIAKNRPHLKSGQ
Sbjct: 1037 LNSDPCINIVFNTFNLNWHFLHDNYHNNYCEETPTRISLGQFFFENVCIAKNRPHLKSGQ 1096

Query: 1024 IIIVEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVE 1083
            IIIV+VDS+VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDIT GLPKVE
Sbjct: 1097 IIIVQVDSLVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVE 1156

Query: 1084 QVLEVRSIDSISISLQKEIE-----------------VG----------------MSVYR 1143
            QVLEVRSIDSIS+SL+K IE                 +G                  VYR
Sbjct: 1157 QVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYR 1216

Query: 1144 SQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAV 1187
            SQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAV
Sbjct: 1217 SQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAV 1276

[Close]
BLAST of Sed0017787 vs. ExPASy Swiss-Prot
Match: B1A925 (DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 1845.9 bits (4780), Expect = 0.0e+00
Identity = 967/1315 (73.54%), Postives = 1052/1315 (80.00%), Query Frame = 0 

Query: 4    QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
            QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR+TDPFNPVHIMS
Sbjct: 73   QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRVTDPFNPVHIMS 132

Query: 64   FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
            FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133  FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192

Query: 124  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
            AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP NR +PERIFIQTLIGRVLADD
Sbjct: 193  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPKNRTMPERIFIQTLIGRVLADD 252

Query: 184  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
            IYMGPRCI IRNQDIGIGL+NRFITF+TQ ISIRTPFTCRSTSWICRLCYGR        
Sbjct: 253  IYMGPRCIAIRNQDIGIGLVNRFITFRTQSISIRTPFTCRSTSWICRLCYGRSPTHGDLV 312

Query: 244  ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
               +AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+R+PSNGKIKFNEDLVHPTRT
Sbjct: 313  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRSPSNGKIKFNEDLVHPTRT 372

Query: 304  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
            RHGHPAFLCYIDLSV IESEDIIHNVTIPPKS LLVQNDQYVESEQVIAEIRAGTYTLN 
Sbjct: 373  RHGHPAFLCYIDLSVVIESEDIIHNVTIPPKSFLLVQNDQYVESEQVIAEIRAGTYTLNY 432

Query: 364  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
            KERVRKHIYS+SEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGS   S+VPFSL+
Sbjct: 433  KERVRKHIYSNSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSSRSSLVPFSLH 492

Query: 424  KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
            KDQDQ+N+HSLSVE+  ISSL+VNND+ RHKF+  +   K + GI DYSE + IL TG  
Sbjct: 493  KDQDQMNIHSLSVEQESISSLAVNNDQGRHKFFSSNFSDKKKCGIPDYSEFHRILDTGHC 552

Query: 484  NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFF------- 543
            NL Y A  H N DLLAKRRRN FII F S+QE+EKEL   SGISIEIPING F       
Sbjct: 553  NLIYFASLHENSDLLAKRRRNRFIIPFQSIQEQEKELMPRSGISIEIPINGIFRRNSILA 612

Query: 544  ---------------------------------------------------------VEI 603
                                                                     V I
Sbjct: 613  FFDDPRYRRKSSGILKYGTIGAHSIVKKEDVIEYRGVKKFKTKYQMKVDRFFFIPEEVHI 672

Query: 604  VFLLISMILNTEEIL----RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMDKI 663
            +    S+++    I+    R+TL+IRS+VGGLVRVE+KKK IEL+IFSGDI+FPG+ DKI
Sbjct: 673  LPESSSIMVRNNSIIGVDTRITLNIRSQVGGLVRVERKKKSIELQIFSGDIHFPGKTDKI 732

Query: 664  SRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTL 723
            SRH+GILIPP R K NSK+S KLKNWIYVQ ITPTKKKYFV VRPV  YE+ADGINL TL
Sbjct: 733  SRHSGILIPPGRGKTNSKESKKLKNWIYVQRITPTKKKYFVLVRPVATYEIADGINLATL 792

Query: 724  FPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKEAR 783
            FPQDL +E+DN++LR VNYILY NGKP+RGI  TSIQLVRTCL+LNWD+D KSSS++E R
Sbjct: 793  FPQDLFREKDNMQLRVVNYILYGNGKPVRGIFDTSIQLVRTCLVLNWDQDNKSSSVEEVR 852

Query: 784  VSFVEVSTNGLVQNFLRIDLVKCDT--SYIRKRKDPSGSGLIFNN------------EVP 843
              FVEVSTN L+++FLRIDLVK  +  SYIRKR DPSGSGLI +N             + 
Sbjct: 853  TFFVEVSTNSLIRDFLRIDLVKSQSHISYIRKRNDPSGSGLISDNGSDRINPFYYKERIQ 912

Query: 844  QSFSKNQGTIRTL--RNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPL-EIRN 903
            QS SKN GTIRTL  RNKE QS IILS+SNC Q+  FN VK  NVIK+S KKDPL  IRN
Sbjct: 913  QSLSKNHGTIRTLLNRNKECQSLIILSSSNCFQMGPFNHVKYHNVIKQSIKKDPLIPIRN 972

Query: 904  SLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNSDP 963
            SLGP+G A QI NFYS Y LITHN IS+TKY QLDNL Q F+VIKYYLMDE G + N DP
Sbjct: 973  SLGPVGTAIQIANFYSIYHLITHNQISVTKYFQLDNLNQIFEVIKYYLMDETGRVYNPDP 1032

Query: 964  SNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIIIVE 1023
             +NI+LN FNLNW+FL  NYH +YCEET   ISLGQF  ENVC+AKN PHLKSGQ++IV+
Sbjct: 1033 CSNIILNPFNLNWYFLYQNYHHNYCEETSTIISLGQFICENVCLAKNGPHLKSGQVLIVQ 1092

Query: 1024 VDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVLEV 1083
            VDSVVIRSAKPYLAT GATVH HYGEILYEGDTLVTFIYEKSRSGDIT GLPKVEQVLEV
Sbjct: 1093 VDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEV 1152

Query: 1084 RSIDSISISLQKEIE-----------------VG----------------MSVYRSQGVE 1143
            RSIDSIS++L+K +E                 +G                  VYRSQGV+
Sbjct: 1153 RSIDSISLNLEKRVEGWNKRITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQ 1212

Query: 1144 IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIT 1187
            IHNRHIEIIVRQITSKVLVSE+GMSNVF PGELIGLLRAERTGRALEEAICYRA+LLGIT
Sbjct: 1213 IHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEAICYRAILLGIT 1272

[Close]
BLAST of Sed0017787 vs. ExPASy Swiss-Prot
Match: Q49L08 (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 1838.5 bits (4761), Expect = 0.0e+00
Identity = 962/1316 (73.10%), Postives = 1047/1316 (79.56%), Query Frame = 0 

Query: 4    QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
            QDAEQQSLILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 77   QDAEQQSLILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMS 136

Query: 64   FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
            FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 137  FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 196

Query: 124  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
            AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRG+SVSP N M+PERIFIQTLIGRVLADD
Sbjct: 197  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGVSVSPRNGMMPERIFIQTLIGRVLADD 256

Query: 184  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
            IYMGPRCI IRNQDIGIGL+NRFITF+TQPISIRTPFTCRSTSWICRLCYGR        
Sbjct: 257  IYMGPRCIAIRNQDIGIGLVNRFITFRTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 316

Query: 244  ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
               +AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFN+DLVHPTRT
Sbjct: 317  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNDDLVHPTRT 376

Query: 304  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
            RHGHPAFLC IDL VTIESEDI+HNVTIPPKS LLVQN+QYVESEQVIAEIRAGTYT NL
Sbjct: 377  RHGHPAFLCSIDLYVTIESEDILHNVTIPPKSFLLVQNNQYVESEQVIAEIRAGTYTFNL 436

Query: 364  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
            KERVRKHIYS+SEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSC  S VPFSLY
Sbjct: 437  KERVRKHIYSESEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCRSSRVPFSLY 496

Query: 424  KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGK-NESGILDYSELNPILCTGQ 483
            KDQDQ+N+ S   ERRYISSLSVNND++R++    D  GK  E  I DYSELN I+    
Sbjct: 497  KDQDQMNLRSTERERRYISSLSVNNDQMRYELCSSDFSGKIKEDRIPDYSELNRIISIVH 556

Query: 484  SNLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGF------- 543
             NL YP  F  N DLLAKRRRN F+I   S+QER+KEL   SGISIE+PING        
Sbjct: 557  CNLKYPTTFDENSDLLAKRRRNRFLIPLQSIQERKKELMPHSGISIELPINGILRRNSIL 616

Query: 544  --------------FVEIVFLLISMILNTEEIL--------------------------- 603
                           ++   L +  ++  E+++                           
Sbjct: 617  AYFDDPRYRRKSSGIIKYGTLGVHSVVKKEDLIEYRGIKEFKQKCQMKLDPFFFIPEEVH 676

Query: 604  --------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMDK 663
                                R+ L+ RSRVGGLVRVE+KKKRIELKIFSGDI+FPGE DK
Sbjct: 677  IFPESSSIMVRNNSLIGVDTRIALNTRSRVGGLVRVERKKKRIELKIFSGDIHFPGETDK 736

Query: 664  ISRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVT 723
            ISRH+GILIPP   K N K+S K KNWIYVQ ITPTKKKYFV VRPV+ YE+ DGINL T
Sbjct: 737  ISRHSGILIPPGTGKTNFKESKKWKNWIYVQRITPTKKKYFVLVRPVVTYEVLDGINLAT 796

Query: 724  LFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKEA 783
            LFP DLLQERDN++LR VNYI+Y NGKPIRGIS TSIQLVRTCL+LNWD+DKKSSSI+EA
Sbjct: 797  LFPPDLLQERDNMQLRVVNYIVYRNGKPIRGISDTSIQLVRTCLILNWDQDKKSSSIEEA 856

Query: 784  RVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE--------------- 843
              SFVEVSTNGL+++FLRIDLVK   SY+RKR DPSGSGLI +++               
Sbjct: 857  HTSFVEVSTNGLIRDFLRIDLVKFPISYLRKRNDPSGSGLISDSDNVSDHTNSNPFYSKT 916

Query: 844  -VPQSFSKNQGTIRTL--RNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDP-LE 903
             + Q  S+NQGTIRTL  +NKE  S IILS+SNC ++  FN  K  NVIKES KKDP ++
Sbjct: 917  KIQQLLSQNQGTIRTLLNKNKECPSLIILSSSNCFRMGPFNAGKYHNVIKESIKKDPIIK 976

Query: 904  IRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILN 963
            IRNS+GPLG   Q VNFYSFY LITHNPI +TKYLQL+NLKQTFQVI YYLMDENG ILN
Sbjct: 977  IRNSIGPLGTVLQFVNFYSFYYLITHNPILVTKYLQLENLKQTFQVINYYLMDENGRILN 1036

Query: 964  SDPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQII 1023
             D  +NIVLN+FNLNW+FL HNY+ +Y EE    ISLGQF  ENVCI+KN PHLKSGQ++
Sbjct: 1037 PDSCSNIVLNSFNLNWYFLHHNYYHNYFEERSTIISLGQFICENVCISKNGPHLKSGQVL 1096

Query: 1024 IVEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQV 1083
            IV+VDSVVIRSAKPYLAT GATVH HYGEILYEGDTLVTFIYEKSRSGDIT GLPKVEQV
Sbjct: 1097 IVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1156

Query: 1084 LEVRSIDSISISLQKEIE-----------------VG----------------MSVYRSQ 1143
            LEVRSIDSIS++L+K IE                 +G                  VYRSQ
Sbjct: 1157 LEVRSIDSISMNLEKRIEGWNEHIKKILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQ 1216

Query: 1144 GVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLL 1187
            GV+IHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGLLRA RTGRALEE+ICYRA+LL
Sbjct: 1217 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAARTGRALEESICYRAILL 1276

[Close]
BLAST of Sed0017787 vs. ExPASy Swiss-Prot
Match: B1NWE0 (DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 1830.5 bits (4740), Expect = 0.0e+00
Identity = 970/1321 (73.43%), Postives = 1051/1321 (79.56%), Query Frame = 0 

Query: 4    QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
            QDAEQQSLILEKH+HYGNVHAVEKLRQSIEIWYATSEYLRQEMN NFRMT+PFNPVHIMS
Sbjct: 77   QDAEQQSLILEKHYHYGNVHAVEKLRQSIEIWYATSEYLRQEMNLNFRMTEPFNPVHIMS 136

Query: 64   FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
            FSGARGN SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 137  FSGARGNTSQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 196

Query: 124  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
            AVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISVSP N M+PERIFIQT IGRVLAD+
Sbjct: 197  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMPERIFIQTFIGRVLADN 256

Query: 184  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
            IYMG RCI IRNQDIGIGL NRFITF+TQ ISIRTPFTCRSTSWICRLCYGR        
Sbjct: 257  IYMGLRCIAIRNQDIGIGLANRFITFRTQTISIRTPFTCRSTSWICRLCYGRSPTHGDLV 316

Query: 244  ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
               +AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFNEDLVHP RT
Sbjct: 317  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPIRT 376

Query: 304  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
            RHGHPAFLCYIDL VTI+S+DIIHNVTIPPKS LLVQNDQYVESEQVIAEIRAG YTLN 
Sbjct: 377  RHGHPAFLCYIDLYVTIKSQDIIHNVTIPPKSFLLVQNDQYVESEQVIAEIRAGAYTLNF 436

Query: 364  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
            KE+VRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSG SC  S+VPFSL+
Sbjct: 437  KEKVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGSSCRSSIVPFSLH 496

Query: 424  KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
            KDQDQ+NVHSLSV+RRYISS SVNND+V+HKF+  D  GK ESGI DYSELN  +CTG  
Sbjct: 497  KDQDQMNVHSLSVKRRYISSPSVNNDQVKHKFFSSDFSGKKESGIPDYSELNRSICTGHC 556

Query: 484  NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPING--------- 543
            NL Y  I + N DLLAKRRRN FII F S+QEREKEL T S ISIEIPING         
Sbjct: 557  NLIYSTILYKNSDLLAKRRRNKFIIPFQSIQEREKELMTQSAISIEIPINGIFRRNSVFA 616

Query: 544  ----------------------------------------------------FFVEIVFL 603
                                                                F  E V++
Sbjct: 617  YFDDPQYRKKSSGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQTKVDRFFFIPEEVYI 676

Query: 604  L---ISMILNTEEIL----RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMDKI 663
            L    S+++    I+    ++ L+ RSRVGGLVRVE+KKK++ELKIFSGDI+FPGE DKI
Sbjct: 677  LPESSSLMVRNNSIIGVDTQIALNTRSRVGGLVRVERKKKKMELKIFSGDIHFPGETDKI 736

Query: 664  SRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTL 723
            SRH+ ILIPP  VK NSK+S K+KNWIY+Q ITPTKKKYFV VRPVIIYE+A+GINL TL
Sbjct: 737  SRHSDILIPPGTVKTNSKESKKVKNWIYIQRITPTKKKYFVLVRPVIIYEIANGINLETL 796

Query: 724  FPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKEAR 783
            FPQDLLQE+DNL+LR VNYILY  GKPIRGIS TSIQLVRTCL+LNWD+DKKSSSI+EAR
Sbjct: 797  FPQDLLQEKDNLKLRVVNYILYGTGKPIRGISDTSIQLVRTCLVLNWDQDKKSSSIEEAR 856

Query: 784  VSFVEVSTNGLVQNFLRIDLVKCDTSYI-RKRKDPSGSGLIFNN---------------- 843
             +FVE+STNGL+++FLRI+LVK   SYI RKR DPSGS  I NN                
Sbjct: 857  AAFVEISTNGLIRDFLRINLVKFHISYIGRKRNDPSGSEPISNNGSDRTNINPFYPIYSK 916

Query: 844  -EVPQSFSKNQGTIRTLR--NKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDP-L 903
              V QS  +NQGTI TL   NKE QS IILS+SNC Q+D FNDVK  NVIKES K+DP +
Sbjct: 917  TRVQQSLKQNQGTISTLLNINKECQSLIILSSSNCFQMDPFNDVKHHNVIKESIKRDPII 976

Query: 904  EIRNSLGPLGAAPQIVNFYSFY--QLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGG 963
             IRNSLGPLG A QI NFY FY   LITHN IS+TKY +L NLKQTFQV+KYYLMDENG 
Sbjct: 977  PIRNSLGPLGTALQIANFYLFYHLNLITHNQISVTKYSKLYNLKQTFQVLKYYLMDENGR 1036

Query: 964  ILNSDPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSG 1023
            I+N DP +N VLN FNLNW+FL HN    YCE     ISLGQF  EN+C+AKN PHLKSG
Sbjct: 1037 IVNPDPCSNSVLNPFNLNWYFLHHN----YCESFFTIISLGQFICENLCMAKNGPHLKSG 1096

Query: 1024 QIIIVEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKV 1083
            Q+IIV +DSVVIRSAKPYLAT GATVH HYGEILYEG+TLVTFIYEKSRSGDIT GLPKV
Sbjct: 1097 QVIIVHIDSVVIRSAKPYLATPGATVHGHYGEILYEGNTLVTFIYEKSRSGDITQGLPKV 1156

Query: 1084 EQVLEVRSIDSISISLQKEIE-----------------VG----------------MSVY 1143
            EQVLEVRSIDSISI+L+K +E                 +G                  VY
Sbjct: 1157 EQVLEVRSIDSISINLEKRVEGWNECITRILGIPWGFLIGTELTIVQSRISLVNKIQKVY 1216

Query: 1144 RSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRA 1187
            RSQGV+IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICY A
Sbjct: 1217 RSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYGA 1276

[Close]
BLAST of Sed0017787 vs. ExPASy Swiss-Prot
Match: Q0ZJ30 (DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera OX=29760 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 1830.1 bits (4739), Expect = 0.0e+00
Identity = 970/1322 (73.37%), Postives = 1039/1322 (78.59%), Query Frame = 0 

Query: 4    QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
            QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN NFRMTDPFNPVHIMS
Sbjct: 77   QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNTNFRMTDPFNPVHIMS 136

Query: 64   FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
            FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 137  FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 196

Query: 124  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
            AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP N MIPERIFIQTLIGRVLADD
Sbjct: 197  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMIPERIFIQTLIGRVLADD 256

Query: 184  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
            IYMGPRCI IRNQDIGIGL+NRFITFQ Q ISIRTPFTC+STSWICRLCYGR        
Sbjct: 257  IYMGPRCIAIRNQDIGIGLVNRFITFQAQTISIRTPFTCKSTSWICRLCYGRSPTHGDLV 316

Query: 244  ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
               +AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFNED VHPTRT
Sbjct: 317  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDWVHPTRT 376

Query: 304  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
            RHGHPAFLCYIDL VTIESE IIHNV IPPKS LLVQNDQYVESEQVIAEIRAGTYT N 
Sbjct: 377  RHGHPAFLCYIDLYVTIESEGIIHNVNIPPKSFLLVQNDQYVESEQVIAEIRAGTYTFNF 436

Query: 364  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
            KERVRKHIYSDSEGEMHWSTDVYHAPEFTY NVHLLPKTSHLWILSGGSC  S+VPFS++
Sbjct: 437  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILSGGSCRFSIVPFSIH 496

Query: 424  KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
            KDQDQ++V SLSVERRYIS+ SV ND+V H+F+  DL GK E  I  YSELN I+ TG+ 
Sbjct: 497  KDQDQMSVRSLSVERRYISNPSVTNDQVIHEFFSSDLSGKKEGRIPAYSELNRIIYTGRY 556

Query: 484  NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFF------- 543
            NL  PAI H N DLLAKRRRN FII F S+QE EKEL   SGISIEIPING F       
Sbjct: 557  NLIDPAILHENSDLLAKRRRNRFIIPFQSIQEGEKELMPPSGISIEIPINGIFRRNSILA 616

Query: 544  ---------------------------------------------------------VEI 603
                                                                     V I
Sbjct: 617  YFDDPRYRRNSSGITKYGTIEAHSIVKKEDLIEYRGVKEFKPKYQMKVDRFFFIPEEVHI 676

Query: 604  VFLLISMILNTEEIL----RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMDKI 663
            +    S+++    I+    R+TL+ RSRV GLVRVE+KKKRIELKIFSGDI FPGE +KI
Sbjct: 677  LPGSASIMVRNNSIIGVDTRITLNTRSRVSGLVRVERKKKRIELKIFSGDIQFPGETNKI 736

Query: 664  SRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTL 723
            SRH GILIPP   KKNSK+S KLKNWIYVQ ITPTKKKYFV VRPV+ YE+ADGINL TL
Sbjct: 737  SRHIGILIPPGTRKKNSKESKKLKNWIYVQGITPTKKKYFVLVRPVVTYEIADGINLATL 796

Query: 724  FPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKEAR 783
            FPQDLLQERDN+ L+ VNYILY NGKPIRGIS TSIQLVRTCL+LNW ++KKSS I++  
Sbjct: 797  FPQDLLQERDNMHLQVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWYQEKKSSPIEKTH 856

Query: 784  VSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE---------------- 843
             SF+EV TNGL+++FL I+LVK   SY  KR DPS SGLI +N                 
Sbjct: 857  ASFMEVRTNGLIRDFLTINLVKSYISYTGKRNDPSSSGLIADNGSDHTNINPFYSIYPKE 916

Query: 844  -----VPQSFSKNQGTIRTL--RNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKD 903
                 + Q   KNQGTIRTL  RNKE QS IILS+SNC ++  FNDVK  NVIKES KKD
Sbjct: 917  RIQQLLRQRQKKNQGTIRTLLNRNKECQSLIILSSSNCSRMGPFNDVKYHNVIKESIKKD 976

Query: 904  -PLEIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENG 963
             P+ IRNSLGPLG A QI NFYSFY LITHN I +TKY QLDN KQTFQ +KYYLMDENG
Sbjct: 977  TPIPIRNSLGPLGTALQITNFYSFYHLITHNHILVTKYFQLDNFKQTFQTLKYYLMDENG 1036

Query: 964  GILNSDPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKS 1023
               N DP +NI+LN FNLNW+FL HN    YCEET   ISLGQF  ENVCIAKN PHLKS
Sbjct: 1037 ITYNPDPCSNIILNPFNLNWYFLHHN----YCEETSTIISLGQFICENVCIAKNGPHLKS 1096

Query: 1024 GQIIIVEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPK 1083
            GQ++IV+VDSVVIRSAKPYLAT GATVH HYGEILYEGDTLVTFIYEKSRSGDIT GLPK
Sbjct: 1097 GQVLIVQVDSVVIRSAKPYLATLGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPK 1156

Query: 1084 VEQVLEVRSIDSISISLQKEIE-----------------VG----------------MSV 1143
            VEQVLEVRSIDSIS++L+K +E                 +G                  V
Sbjct: 1157 VEQVLEVRSIDSISMNLEKRVEGWNEHITRILGIPWGFFIGAELTIAQSRISLVNKIQKV 1216

Query: 1144 YRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYR 1187
            YRSQGV+IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRA EEAICYR
Sbjct: 1217 YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRAFEEAICYR 1276

[Close]
BLAST of Sed0017787 vs. ExPASy TrEMBL
Match: A0A6H0EQ95 (DNA-directed RNA polymerase subunit beta'' OS=Sechium edule OX=184140 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2256.9 bits (5847), Expect = 0.0e+00
Identity = 1162/1315 (88.37%), Postives = 1171/1315 (89.05%), Query Frame = 0 

Query: 4    QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
            QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 73   QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 132

Query: 64   FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
            FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133  FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192

Query: 124  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
            AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 193  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 252

Query: 184  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
            IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR        
Sbjct: 253  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 312

Query: 244  ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
               +AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 313  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 372

Query: 304  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
            RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 373  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 432

Query: 364  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
            KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY
Sbjct: 433  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 492

Query: 424  KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
            KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS
Sbjct: 493  KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 552

Query: 484  NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFF------- 543
            NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPING F       
Sbjct: 553  NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGIFRRNSILA 612

Query: 544  --------------------------------------------------VEIVFLL--- 603
                                                              V++ F +   
Sbjct: 613  YFDDPQYRRNSSGITKYGTIGVHSILKKEDFLIEYRGVKDFKPKYQMQMKVDLFFFIPEE 672

Query: 604  -------ISMILNTEEIL----RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEM 663
                    S+++    I+    RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEM
Sbjct: 673  VHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEM 732

Query: 664  DKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 723
            DKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV
Sbjct: 733  DKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 792

Query: 724  TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 783
            TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSI E
Sbjct: 793  TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIXE 852

Query: 784  ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE-------------- 843
            ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE              
Sbjct: 853  ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYS 912

Query: 844  ---VPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEI 903
               VPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEI
Sbjct: 913  KTRVPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEI 972

Query: 904  RNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNS 963
            RNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNS
Sbjct: 973  RNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNS 1032

Query: 964  DPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIII 1023
            DPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIII
Sbjct: 1033 DPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIII 1092

Query: 1024 VEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVL 1083
            VEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVL
Sbjct: 1093 VEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVL 1152

Query: 1084 EVRSIDSISISLQKEIE-----------------VG----------------MSVYRSQG 1143
            EVRSIDSISISLQK IE                 +G                  VYRSQG
Sbjct: 1153 EVRSIDSISISLQKRIEGWNERITRILGIPWEFLIGAELTIVQSRISLVNKIQKVYRSQG 1212

Query: 1144 VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG 1187
            VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG
Sbjct: 1213 VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG 1272

[Close]
BLAST of Sed0017787 vs. ExPASy TrEMBL
Match: A0A6H0ESQ0 (DNA-directed RNA polymerase subunit beta'' OS=Cyclanthera pedata OX=198836 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2178.3 bits (5643), Expect = 0.0e+00
Identity = 1127/1312 (85.90%), Postives = 1144/1312 (87.20%), Query Frame = 0 

Query: 4    QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
            QDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 73   QDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 132

Query: 64   FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
            FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133  FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192

Query: 124  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
            AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 193  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 252

Query: 184  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
            IY GPRCIGIRNQDIGIGLINR ITFQTQPISIRTPFTCRSTSWICRLCYGR        
Sbjct: 253  IYTGPRCIGIRNQDIGIGLINRLITFQTQPISIRTPFTCRSTSWICRLCYGRSPTQGDLV 312

Query: 244  ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
               +AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 313  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 372

Query: 304  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
            RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 373  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 432

Query: 364  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
            KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY
Sbjct: 433  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 492

Query: 424  KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
            KDQDQINVHSLSVERRYISSLSVNNDKVR KFYGP+L GKNESGIL YSELNPILCTGQS
Sbjct: 493  KDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGPNLSGKNESGILYYSELNPILCTGQS 552

Query: 484  NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFFVEIVFLL 543
            NLTYPAIFHGN DLLAKRRRNGFII+FDSLQEREKELP TSGI IEIPING F     L 
Sbjct: 553  NLTYPAIFHGNSDLLAKRRRNGFIIEFDSLQEREKELPPTSGIWIEIPINGIFRRNSILA 612

Query: 544  ---------------------ISMILNTEEIL---------------------------- 603
                                 +  IL  E+++                            
Sbjct: 613  YFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMKVDRFFFIPEEVHI 672

Query: 604  -------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMDKI 663
                               RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDI+FPGEMDKI
Sbjct: 673  LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKI 732

Query: 664  SRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF 723
            SRHNGILIPPERVKK+SKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF
Sbjct: 733  SRHNGILIPPERVKKHSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF 792

Query: 724  PQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKEARV 783
            PQDLLQERDNLELR VNYILYENGKPIRGISGTSIQLVRTCLLLNWD+DKKSSSI+EARV
Sbjct: 793  PQDLLQERDNLELRVVNYILYENGKPIRGISGTSIQLVRTCLLLNWDQDKKSSSIEEARV 852

Query: 784  SFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE----------------- 843
            SFVEVSTNGLV NFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE                 
Sbjct: 853  SFVEVSTNGLVLNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYSKTR 912

Query: 844  VPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEIRNS 903
            V QS S+NQGTIRTLRNKERQS IILSASNCLQIDLFNDVKD NVIKESSKKDPLEIRNS
Sbjct: 913  VAQSLSQNQGTIRTLRNKERQSLIILSASNCLQIDLFNDVKDYNVIKESSKKDPLEIRNS 972

Query: 904  LGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNSDPS 963
             GPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNL QTFQVIKYYL+DENGGILNSDPS
Sbjct: 973  FGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLTQTFQVIKYYLIDENGGILNSDPS 1032

Query: 964  NNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIIIVEV 1023
            +NIVLNTFNLNWHFL HNYH SYCEETP RISLGQFFFENVCIAKNRPHLKSGQIIIV+V
Sbjct: 1033 SNIVLNTFNLNWHFLYHNYHHSYCEETPTRISLGQFFFENVCIAKNRPHLKSGQIIIVQV 1092

Query: 1024 DSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVLEVR 1083
            DSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDIT GLPKVEQVLEVR
Sbjct: 1093 DSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1152

Query: 1084 SIDSISISLQKEIE-----------------VG----------------MSVYRSQGVEI 1143
            SIDSISISLQK IE                 +G                  VYRSQGVEI
Sbjct: 1153 SIDSISISLQKRIEGWNERITKILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEI 1212

Query: 1144 HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK 1187
            HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK
Sbjct: 1213 HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK 1272

[Close]
BLAST of Sed0017787 vs. ExPASy TrEMBL
Match: A0A6H0EPT4 (DNA-directed RNA polymerase subunit beta'' OS=Luffa aegyptiaca OX=3670 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2174.8 bits (5634), Expect = 0.0e+00
Identity = 1127/1317 (85.57%), Postives = 1145/1317 (86.94%), Query Frame = 0 

Query: 4    QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
            QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 73   QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 132

Query: 64   FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
            FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133  FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192

Query: 124  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
            AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 193  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 252

Query: 184  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
            IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR        
Sbjct: 253  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 312

Query: 244  ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
               +AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 313  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 372

Query: 304  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
            RHGHPAFLCYIDL VTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 373  RHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 432

Query: 364  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
            KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSC CSVVPFSLY
Sbjct: 433  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLY 492

Query: 424  KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
            KDQDQINVHSLSVERRYISSLSVNNDKVR KFYGPDL GKNESGI DYSELNPILCTGQS
Sbjct: 493  KDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQS 552

Query: 484  NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFFVEIVFLL 543
            NLTYPAIFHGN DLLAKRRRNGFIIQF+SLQEREKELP  SGISIEIPING F     L 
Sbjct: 553  NLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRNSILA 612

Query: 544  ---------------------ISMILNTEEIL---------------------------- 603
                                 +  IL  E+++                            
Sbjct: 613  YFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEV 672

Query: 604  ---------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMD 663
                                 RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDI+FPGEMD
Sbjct: 673  HILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMD 732

Query: 664  KISRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 723
            KISRHNGILIPPERVKKNSKKS KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV
Sbjct: 733  KISRHNGILIPPERVKKNSKKSKKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 792

Query: 724  TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 783
            TLFPQDLLQERDNLELR VNYILY NGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSI+E
Sbjct: 793  TLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEE 852

Query: 784  ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE-------------- 843
            AR SFVEVSTNGLV+NFLRIDLVK DTSYIRKRKDPSGSGLIFNNE              
Sbjct: 853  ARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYS 912

Query: 844  ---VPQSFSKNQGTIRTL--RNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPL 903
               VPQS S+NQGTIRTL  RNKERQS IILSASNCLQ+DLFNDVKD NVIKESSKKDPL
Sbjct: 913  KTRVPQSLSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDYNVIKESSKKDPL 972

Query: 904  EIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGIL 963
            EIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDN KQTFQV+KYYLMDENGGIL
Sbjct: 973  EIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNFKQTFQVLKYYLMDENGGIL 1032

Query: 964  NSDPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQI 1023
            NSDP +NIV NTFNLNWHFL HNYH SYCEETP RISLGQFFFENVCIAKNRPHLKSGQI
Sbjct: 1033 NSDPCSNIVFNTFNLNWHFLHHNYHNSYCEETPTRISLGQFFFENVCIAKNRPHLKSGQI 1092

Query: 1024 IIVEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQ 1083
            IIV+VDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDIT GLPKVEQ
Sbjct: 1093 IIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQ 1152

Query: 1084 VLEVRSIDSISISLQKEIE-----------------VG----------------MSVYRS 1143
            VLEVRSIDSIS+SL+K IE                 +G                  VYRS
Sbjct: 1153 VLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRS 1212

Query: 1144 QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVL 1187
            QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVL
Sbjct: 1213 QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVL 1272

[Close]
BLAST of Sed0017787 vs. ExPASy TrEMBL
Match: A0A6H0ER02 (DNA-directed RNA polymerase subunit beta'' OS=Trichosanthes tricuspidata OX=654837 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2167.9 bits (5616), Expect = 0.0e+00
Identity = 1124/1317 (85.35%), Postives = 1141/1317 (86.64%), Query Frame = 0 

Query: 4    QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
            QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 73   QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 132

Query: 64   FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
            FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133  FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192

Query: 124  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
            AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 193  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 252

Query: 184  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
            IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR        
Sbjct: 253  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 312

Query: 244  ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
               +AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 313  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 372

Query: 304  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
            RHGHPAFLCYIDL VTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 373  RHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 432

Query: 364  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
            KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSC CS VPFSLY
Sbjct: 433  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSGVPFSLY 492

Query: 424  KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
            KDQDQINVHSLSVERRYISSLSVNNDKVR KFYGPDL GKNESGI DYSELNPILCTGQS
Sbjct: 493  KDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGPDLSGKNESGITDYSELNPILCTGQS 552

Query: 484  NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFFVEIVFLL 543
            NLTYPAIFHGN DLLAKRRRNGFIIQF+SL EREKELP  SGISIEIPING F     L 
Sbjct: 553  NLTYPAIFHGNSDLLAKRRRNGFIIQFESLHEREKELPPPSGISIEIPINGIFRRNSILA 612

Query: 544  ---------------------ISMILNTEEIL---------------------------- 603
                                 +  IL  E+++                            
Sbjct: 613  YFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFISEEV 672

Query: 604  ---------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMD 663
                                 RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDI+FPGEMD
Sbjct: 673  HILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMD 732

Query: 664  KISRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 723
            KISRHNGILIPPERVKKNSKKS KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV
Sbjct: 733  KISRHNGILIPPERVKKNSKKSKKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 792

Query: 724  TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 783
            TLFPQDLLQERDNLELR VNYILY NGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSI+E
Sbjct: 793  TLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEE 852

Query: 784  ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE-------------- 843
            AR SFVEVSTNGLV+NFLRIDLVK DTSYIRKRKDPSGSGLIFNNE              
Sbjct: 853  ARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYS 912

Query: 844  ---VPQSFSKNQGTIRTL--RNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPL 903
               VPQS SKNQGTIRTL  RNKERQS IILSASNCLQ+DLFNDVKD NVIKESSKKDPL
Sbjct: 913  KTRVPQSLSKNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDYNVIKESSKKDPL 972

Query: 904  EIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGIL 963
            EIRNSLGPLG APQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQV+KYYLMDENGGIL
Sbjct: 973  EIRNSLGPLGVAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVLKYYLMDENGGIL 1032

Query: 964  NSDPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQI 1023
            NSDP +NIV NTFNLNWHFL HNYH SYCEETP RISLGQFFFENVCIAKNRPHLKSGQI
Sbjct: 1033 NSDPCSNIVFNTFNLNWHFLHHNYHHSYCEETPTRISLGQFFFENVCIAKNRPHLKSGQI 1092

Query: 1024 IIVEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQ 1083
            IIV+VDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDIT GLPKVEQ
Sbjct: 1093 IIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQ 1152

Query: 1084 VLEVRSIDSISISLQKEIE-----------------VG----------------MSVYRS 1143
            VLEVRSIDSIS+SL+K IE                 +G                  VYRS
Sbjct: 1153 VLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRS 1212

Query: 1144 QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVL 1187
            QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGLLRAERTGRALEEAICYRAVL
Sbjct: 1213 QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAVL 1272

[Close]
BLAST of Sed0017787 vs. ExPASy TrEMBL
Match: A0A6H0ESV4 (DNA-directed RNA polymerase subunit beta'' OS=Trichosanthes wallichiana OX=1144464 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 2167.9 bits (5616), Expect = 0.0e+00
Identity = 1124/1317 (85.35%), Postives = 1141/1317 (86.64%), Query Frame = 0 

Query: 4    QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
            QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 73   QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 132

Query: 64   FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
            FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133  FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192

Query: 124  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
            AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 193  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 252

Query: 184  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
            IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR        
Sbjct: 253  IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 312

Query: 244  ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
               +AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 313  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 372

Query: 304  RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
            RHGHPAFLCYIDL VTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 373  RHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 432

Query: 364  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
            KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSC CS VPFSLY
Sbjct: 433  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSGVPFSLY 492

Query: 424  KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
            KDQDQINVHSLSVERRYISSLSVNNDKVR KFYGPDL GKNESGI DYSELNPILCTGQS
Sbjct: 493  KDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGPDLSGKNESGITDYSELNPILCTGQS 552

Query: 484  NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFFVEIVFLL 543
            NLTYPAIFHGN DLLAKRRRNGFIIQF+SL EREKELP  SGISIEIPING F     L 
Sbjct: 553  NLTYPAIFHGNSDLLAKRRRNGFIIQFESLHEREKELPPPSGISIEIPINGIFRRNSILA 612

Query: 544  ---------------------ISMILNTEEIL---------------------------- 603
                                 +  IL  E+++                            
Sbjct: 613  YFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFISEEV 672

Query: 604  ---------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMD 663
                                 RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDI+FPGEMD
Sbjct: 673  HILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMD 732

Query: 664  KISRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 723
            KISRHNGILIPPERVKKNSKKS KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV
Sbjct: 733  KISRHNGILIPPERVKKNSKKSKKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 792

Query: 724  TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 783
            TLFPQDLLQERDNLELR VNYILY NGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSI+E
Sbjct: 793  TLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEE 852

Query: 784  ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE-------------- 843
            AR SFVEVSTNGLV+NFLRIDLVK DTSYIRKRKDPSGSGLIFNNE              
Sbjct: 853  ARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYS 912

Query: 844  ---VPQSFSKNQGTIRTL--RNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPL 903
               VPQS SKNQGTIRTL  RNKERQS IILSASNCLQ+DLFNDVKD NVIKESSKKDPL
Sbjct: 913  KTRVPQSLSKNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDYNVIKESSKKDPL 972

Query: 904  EIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGIL 963
            EIRNSLGPLG APQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQV+KYYLMDENGGIL
Sbjct: 973  EIRNSLGPLGVAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVLKYYLMDENGGIL 1032

Query: 964  NSDPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQI 1023
            NSDP +NIV NTFNLNWHFL HNYH SYCEETP RISLGQFFFENVCIAKNRPHLKSGQI
Sbjct: 1033 NSDPCSNIVFNTFNLNWHFLHHNYHHSYCEETPTRISLGQFFFENVCIAKNRPHLKSGQI 1092

Query: 1024 IIVEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQ 1083
            IIV+VDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDIT GLPKVEQ
Sbjct: 1093 IIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQ 1152

Query: 1084 VLEVRSIDSISISLQKEIE-----------------VG----------------MSVYRS 1143
            VLEVRSIDSIS+SL+K IE                 +G                  VYRS
Sbjct: 1153 VLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRS 1212

Query: 1144 QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVL 1187
            QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGLLRAERTGRALEEAICYRAVL
Sbjct: 1213 QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAVL 1272

[Close]
BLAST of Sed0017787 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 1702.6 bits (4408), Expect = 0.0e+00
Identity = 909/1300 (69.92%), Postives = 997/1300 (76.69%), Query Frame = 0 

Query: 4    QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
            QDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVH+MS
Sbjct: 73   QDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHMMS 132

Query: 64   FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
            FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133  FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192

Query: 124  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP--GNRMIPERIFIQTLIGRVLA 183
            AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP   NRM+ ERIFIQTLIGRVLA
Sbjct: 193  AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKNRMMSERIFIQTLIGRVLA 252

Query: 184  DDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR------ 243
            DDIY+G RC+  RNQD+GIGL+NR ITF TQ ISIRTPFTCRSTSWICRLCYGR      
Sbjct: 253  DDIYIGSRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTSWICRLCYGRSPTHGD 312

Query: 244  -----KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 303
                 +AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAP NGKIKFNEDLVHPT
Sbjct: 313  LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNGKIKFNEDLVHPT 372

Query: 304  RTRHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTL 363
            RTRHGHPAFLCYIDLSV IESEDIIH+VTIPPKS LLVQNDQYVESEQVIAEIR GTYT 
Sbjct: 373  RTRHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQVIAEIREGTYTF 432

Query: 364  NLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFS 423
            + KERVRK+IYSDSEGEMHWSTDV HAPEFTYSNVHLLPKTSHLWILSGGSC  S++ FS
Sbjct: 433  HFKERVRKYIYSDSEGEMHWSTDVSHAPEFTYSNVHLLPKTSHLWILSGGSCGSSLIRFS 492

Query: 424  LYKDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTG 483
            ++KDQDQ+N+  LS ER+ ISSLSVNND+V  KF+  D     + GI DYSELN  L T 
Sbjct: 493  IHKDQDQMNIPFLSAERKSISSLSVNNDQVSQKFFSSDFADPKKLGIYDYSELNGNLGTS 552

Query: 484  QSNLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFF----- 543
              NL Y AIFH N DLLAKRRRN F+I F S+QE+EKE    SGIS+EIPING F     
Sbjct: 553  HYNLIYSAIFHENSDLLAKRRRNRFLIPFQSIQEQEKEFIPQSGISVEIPINGIFRRNSI 612

Query: 544  ----------------VEIVFLLISMILNTEEIL-------------------------- 603
                            ++   L    I+  E+++                          
Sbjct: 613  FAFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKIKTKYEMKVDRFFFIPEEV 672

Query: 604  ---------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMD 663
                                 RLTL+IRS+VGGL+RVEKKKKRIELKIFSGDI+FP + D
Sbjct: 673  HILPESSAIMVQNYSIIGVDTRLTLNIRSQVGGLIRVEKKKKRIELKIFSGDIHFPDKTD 732

Query: 664  KISRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 723
            KISRH+GILIPP R KKNSK+S K KNWIYVQ ITPTKKK+FV VRPV  YE+AD INL 
Sbjct: 733  KISRHSGILIPPGRGKKNSKESKKFKNWIYVQRITPTKKKFFVLVRPVATYEIADSINLA 792

Query: 724  TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 783
            TLFPQDL +E+DN++LR  NYILY NGKP RGIS TSIQLVRTCL+LNWD   K+SS++E
Sbjct: 793  TLFPQDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLVLNWD---KNSSLEE 852

Query: 784  ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE-------------V 843
             R  FVEVST GL+Q+F+RI LVK   SYIRKR +   SGLI  +              +
Sbjct: 853  VRAFFVEVSTKGLIQDFIRIGLVKSHISYIRKRNNSPDSGLISADHMNPFYSISPKSGIL 912

Query: 844  PQSFSKNQGTIRTL--RNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPL-EIR 903
             QS  +N GTIR    RNKE QS +ILS+SNC ++  FN VK  NVI +S KK+ L  I+
Sbjct: 913  QQSLRQNHGTIRMFLNRNKESQSLLILSSSNCFRMGPFNHVKHHNVINQSIKKNTLITIK 972

Query: 904  NSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNSD 963
            NS GPLG A  I NFYSF  L+T+N ISL KY QLDNLK  FQ I  YL+DENG ILN D
Sbjct: 973  NSSGPLGTATPISNFYSFLPLLTYNQISLIKYFQLDNLKYIFQKINSYLIDENGIILNLD 1032

Query: 964  PSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIIIV 1023
            P +N+VLN F LNW+FL  NYH +YCEET   ISLGQFF ENVCIAK  PHLKSGQ++IV
Sbjct: 1033 PYSNVVLNPFKLNWYFLHQNYHHNYCEETSTIISLGQFFCENVCIAKKEPHLKSGQVLIV 1092

Query: 1024 EVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVLE 1083
            + DS VIRSAKPYLAT GA VH HY EILYEGDTLVTFIYEKSRSGDIT GLPKVEQVLE
Sbjct: 1093 QRDSAVIRSAKPYLATPGAKVHGHYSEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 1152

Query: 1084 VRSIDSISISLQKEIE-----------------VG----------------MSVYRSQGV 1143
            VRSIDSIS++L+K I+                 +G                  VYRSQGV
Sbjct: 1153 VRSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 1212

Query: 1144 EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 1170
            +IHNRHIEIIVRQITSKVLVSE+GMSNVF PGELIGLLRAERTGRALEEAICYRAVLLGI
Sbjct: 1213 QIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGI 1272

[Close]
BLAST of Sed0017787 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 71.2 bits (173), Expect = 6.1e-12
Identity = 66/250 (26.40%), Postives = 105/250 (42.00%), Query Frame = 0 

Query: 57   NPVHIMSFSGARG---NASQVHQLVGMRGLMSDPQGQMID---LP--------------I 116
            N + +M+ SGA+G   N  Q+   +G + L      +M+    LP              I
Sbjct: 936  NCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFI 995

Query: 117  QSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHI------VVRRTD 176
                  GL   EY   C   R+G+VDTAV+TS +GYL R L++ ++ +       VR  D
Sbjct: 996  SDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDAD 1055

Query: 177  CGTIR------GISVSPGN--RMIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGL 236
               I+      G+ V   +      E    Q ++ +  ++D+  G         D+ I L
Sbjct: 1056 GSIIQFQYGEDGVDVHRSSFIEKFKELTINQDMVLQKCSEDMLSGASSY---ISDLPISL 1115

Query: 237  ---INRFITFQTQPISIRTPFTCR-------STSWICRLCYGRKAVGIIAGQSIGEPGTQ 263
                 +F+        I + F  +        + +   L    + VG++A QS+GEP TQ
Sbjct: 1116 KKGAEKFVEAMPMNERIASKFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQ 1175

[Close]
BLAST of Sed0017787 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 61.2 bits (147), Expect = 6.3e-09
Identity = 53/217 (24.42%), Postives = 93/217 (42.86%), Query Frame = 0 

Query: 96   IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 155
            + ++   GL+ TE+     G R+G+VDTAV+T+  GY++RRL++ ++ ++V   +  T+R
Sbjct: 835  VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDN--TVR 894

Query: 156  GIS----------------VSPGNRMIP---ERIFIQT-LIGRVLADDIYMGPRCIG--- 215
              S                +  G    P    R+F++        +   Y+    +    
Sbjct: 895  NASGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKF 954

Query: 216  ----IRNQ------DIGIGLINRFITF-------QTQPISIRTPFTCRSTSWICRLCYGR 264
                +R+       D  +  +  F++          Q +   +  T +      ++C  R
Sbjct: 955  EEELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVFR 1014

[Close]
BLAST of Sed0017787 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 61.2 bits (147), Expect = 6.3e-09
Identity = 53/217 (24.42%), Postives = 93/217 (42.86%), Query Frame = 0 

Query: 96   IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 155
            + ++   GL+ TE+     G R+G+VDTAV+T+  GY++RRL++ ++ ++V   +  T+R
Sbjct: 852  VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDN--TVR 911

Query: 156  GIS----------------VSPGNRMIP---ERIFIQT-LIGRVLADDIYMGPRCIG--- 215
              S                +  G    P    R+F++        +   Y+    +    
Sbjct: 912  NASGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKF 971

Query: 216  ----IRNQ------DIGIGLINRFITF-------QTQPISIRTPFTCRSTSWICRLCYGR 264
                +R+       D  +  +  F++          Q +   +  T +      ++C  R
Sbjct: 972  EEELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVFR 1031

[Close]
BLAST of Sed0017787 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-06
Identity = 31/87 (35.63%), Postives = 46/87 (52.87%), Query Frame = 0 

Query: 1061 EAICYRAVLLGITKTSLNTQSF--ISEASFQETARVLAKAALRGRIDWLRGLKENVVLGG 1120
            + + YR  L+ IT+  +N      +   SF+ET  +L  AA     D LRG+ EN++LG 
Sbjct: 1394 DTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQ 1453

Query: 1121 MIPVGTGFREL-AHRSRQHNNIPLETP 1145
            + P+GTG  EL  +     N I L+ P
Sbjct: 1454 LAPIGTGDCELYLNDEMLKNAIELQLP 1480


HSP 2 Score: 51.2 bits (121), Expect = 6.6e-06
Identity = 23/60 (38.33%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 96  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 155
           ++++   GL+  E+     G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+    GT+R
Sbjct: 819 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 876


HSP 3 Score: 41.2 bits (95), Expect = 6.8e-03
Identity = 17/26 (65.38%), Postives = 20/26 (76.92%), Query Frame = 0 

Query: 238  VGIIAGQSIGEPGTQLTLRTFHTGGV 264
            +G +A QSIGEP TQ+TL TFH  GV
Sbjct: 1084 IGCVAAQSIGEPATQMTLNTFHYAGV 1109

The following BLAST results are available for this feature:
BLAST of Sed0017787 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009945407.10.0e+0088.44RNA polymerase beta'' subunit [Sechium edule] >QOE55937.1 RNA polymerase beta'' ... [more]
QIT04123.10.0e+0088.37RNA polymerase beta'' subunit [Sechium edule][more]
YP_009751896.10.0e+0085.90RNA polymerase beta'' subunit [Cyclanthera pedata] >QIT04714.1 RNA polymerase be... [more]
QWQ50133.10.0e+0085.90RNA polymerase beta'' subunit [Cyclanthera pedata][more]
QIT04040.10.0e+0085.57RNA polymerase beta'' subunit [Luffa aegyptiaca] >QKX48549.1 RNA polymerase beta... [more]
BLAST of Sed0017787 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZP30.0e+0084.14DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P... [more]
B1A9250.0e+0073.54DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=... [more]
Q49L080.0e+0073.10DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulu... [more]
B1NWE00.0e+0073.43DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2... [more]
Q0ZJ300.0e+0073.37DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera OX=29760 GN=rpoC2 P... [more]
BLAST of Sed0017787 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6H0EQ950.0e+0088.37DNA-directed RNA polymerase subunit beta'' OS=Sechium edule OX=184140 GN=rpoC2 P... [more]
A0A6H0ESQ00.0e+0085.90DNA-directed RNA polymerase subunit beta'' OS=Cyclanthera pedata OX=198836 GN=rp... [more]
A0A6H0EPT40.0e+0085.57DNA-directed RNA polymerase subunit beta'' OS=Luffa aegyptiaca OX=3670 GN=rpoC2 ... [more]
A0A6H0ER020.0e+0085.35DNA-directed RNA polymerase subunit beta'' OS=Trichosanthes tricuspidata OX=6548... [more]
A0A6H0ESV40.0e+0085.35DNA-directed RNA polymerase subunit beta'' OS=Trichosanthes wallichiana OX=11444... [more]
BLAST of Sed0017787 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00170.10.0e+0069.92DNA-directed RNA polymerase family protein [more]
AT3G57660.16.1e-1226.40nuclear RNA polymerase A1 [more]
AT5G60040.16.3e-0924.42nuclear RNA polymerase C1 [more]
AT5G60040.26.3e-0924.42nuclear RNA polymerase C1 [more]
AT4G35800.12.3e-0635.63RNA polymerase II large subunit [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.1790.20coord: 974..1078
e-value: 2.6E-26
score: 94.1
NoneNo IPR availableGENE3D1.10.150.390coord: 1079..1138
e-value: 7.6E-24
score: 85.0
NoneNo IPR availablePANTHERPTHR19376:SF47DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''coord: 545..1001
NoneNo IPR availablePANTHERPTHR19376:SF47DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''coord: 3..525
coord: 1006..1148
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 3..525
coord: 545..1001
coord: 1006..1148
NoneNo IPR availableCDDcd02655RNAP_beta'_Ccoord: 971..1126
e-value: 5.46664E-67
score: 222.403
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 4..1137
IPR038120RNA polymerase Rpb1, funnel domain superfamilyGENE3D1.10.132.30coord: 2..127
e-value: 8.0E-43
score: 147.8
IPR007083RNA polymerase Rpb1, domain 4PFAMPF05000RNA_pol_Rpb1_4coord: 26..88
e-value: 4.1E-10
score: 39.5
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 103..1078
e-value: 3.9E-45
score: 154.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0017787.1Sed0017787.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0008270 zinc ion binding