Homology
BLAST of Sed0017787 vs. NCBI nr
Match:
YP_009945407.1 (RNA polymerase beta'' subunit [Sechium edule] >QOE55937.1 RNA polymerase beta'' subunit [Sechium edule])
HSP 1 Score: 2259.2 bits (5853), Expect = 0.0e+00
Identity = 1163/1315 (88.44%), Postives = 1172/1315 (89.13%), Query Frame = 0
Query: 4 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 77 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 136
Query: 64 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 137 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 196
Query: 124 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 197 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 256
Query: 184 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR
Sbjct: 257 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 316
Query: 244 ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
+AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 317 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 376
Query: 304 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 377 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 436
Query: 364 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY
Sbjct: 437 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 496
Query: 424 KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS
Sbjct: 497 KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 556
Query: 484 NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFF------- 543
NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPING F
Sbjct: 557 NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGIFRRNSILA 616
Query: 544 --------------------------------------------------VEIVFLL--- 603
V++ F +
Sbjct: 617 YFDDPQYRRNSSGITKYGTIGVHSILKKEDFLIEYRGVKDFKPKYQMQMKVDLFFFIPEE 676
Query: 604 -------ISMILNTEEIL----RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEM 663
S+++ I+ RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEM
Sbjct: 677 VHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEM 736
Query: 664 DKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 723
DKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV
Sbjct: 737 DKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 796
Query: 724 TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 783
TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE
Sbjct: 797 TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 856
Query: 784 ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE-------------- 843
ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE
Sbjct: 857 ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYS 916
Query: 844 ---VPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEI 903
VPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEI
Sbjct: 917 KTRVPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEI 976
Query: 904 RNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNS 963
RNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNS
Sbjct: 977 RNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNS 1036
Query: 964 DPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIII 1023
DPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIII
Sbjct: 1037 DPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIII 1096
Query: 1024 VEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVL 1083
VEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVL
Sbjct: 1097 VEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVL 1156
Query: 1084 EVRSIDSISISLQKEIE-----------------VG----------------MSVYRSQG 1143
EVRSIDSISISLQK IE +G VYRSQG
Sbjct: 1157 EVRSIDSISISLQKRIEGWNERITRILGIPWEFLIGAELTIVQSRISLVNKIQKVYRSQG 1216
Query: 1144 VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG 1187
VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG
Sbjct: 1217 VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG 1276
BLAST of Sed0017787 vs. NCBI nr
Match:
QIT04123.1 (RNA polymerase beta'' subunit [Sechium edule])
HSP 1 Score: 2256.9 bits (5847), Expect = 0.0e+00
Identity = 1162/1315 (88.37%), Postives = 1171/1315 (89.05%), Query Frame = 0
Query: 4 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 73 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 132
Query: 64 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192
Query: 124 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 193 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 252
Query: 184 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR
Sbjct: 253 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 312
Query: 244 ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
+AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 313 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 372
Query: 304 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 373 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 432
Query: 364 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY
Sbjct: 433 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 492
Query: 424 KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS
Sbjct: 493 KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 552
Query: 484 NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFF------- 543
NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPING F
Sbjct: 553 NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGIFRRNSILA 612
Query: 544 --------------------------------------------------VEIVFLL--- 603
V++ F +
Sbjct: 613 YFDDPQYRRNSSGITKYGTIGVHSILKKEDFLIEYRGVKDFKPKYQMQMKVDLFFFIPEE 672
Query: 604 -------ISMILNTEEIL----RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEM 663
S+++ I+ RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEM
Sbjct: 673 VHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEM 732
Query: 664 DKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 723
DKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV
Sbjct: 733 DKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 792
Query: 724 TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 783
TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSI E
Sbjct: 793 TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIXE 852
Query: 784 ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE-------------- 843
ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE
Sbjct: 853 ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYS 912
Query: 844 ---VPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEI 903
VPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEI
Sbjct: 913 KTRVPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEI 972
Query: 904 RNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNS 963
RNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNS
Sbjct: 973 RNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNS 1032
Query: 964 DPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIII 1023
DPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIII
Sbjct: 1033 DPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIII 1092
Query: 1024 VEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVL 1083
VEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVL
Sbjct: 1093 VEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVL 1152
Query: 1084 EVRSIDSISISLQKEIE-----------------VG----------------MSVYRSQG 1143
EVRSIDSISISLQK IE +G VYRSQG
Sbjct: 1153 EVRSIDSISISLQKRIEGWNERITRILGIPWEFLIGAELTIVQSRISLVNKIQKVYRSQG 1212
Query: 1144 VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG 1187
VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG
Sbjct: 1213 VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG 1272
BLAST of Sed0017787 vs. NCBI nr
Match:
YP_009751896.1 (RNA polymerase beta'' subunit [Cyclanthera pedata] >QIT04714.1 RNA polymerase beta'' subunit [Cyclanthera pedata])
HSP 1 Score: 2178.3 bits (5643), Expect = 0.0e+00
Identity = 1127/1312 (85.90%), Postives = 1144/1312 (87.20%), Query Frame = 0
Query: 4 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
QDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 73 QDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 132
Query: 64 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192
Query: 124 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 193 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 252
Query: 184 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
IY GPRCIGIRNQDIGIGLINR ITFQTQPISIRTPFTCRSTSWICRLCYGR
Sbjct: 253 IYTGPRCIGIRNQDIGIGLINRLITFQTQPISIRTPFTCRSTSWICRLCYGRSPTQGDLV 312
Query: 244 ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
+AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 313 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 372
Query: 304 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 373 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 432
Query: 364 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY
Sbjct: 433 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 492
Query: 424 KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
KDQDQINVHSLSVERRYISSLSVNNDKVR KFYGP+L GKNESGIL YSELNPILCTGQS
Sbjct: 493 KDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGPNLSGKNESGILYYSELNPILCTGQS 552
Query: 484 NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFFVEIVFLL 543
NLTYPAIFHGN DLLAKRRRNGFII+FDSLQEREKELP TSGI IEIPING F L
Sbjct: 553 NLTYPAIFHGNSDLLAKRRRNGFIIEFDSLQEREKELPPTSGIWIEIPINGIFRRNSILA 612
Query: 544 ---------------------ISMILNTEEIL---------------------------- 603
+ IL E+++
Sbjct: 613 YFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMKVDRFFFIPEEVHI 672
Query: 604 -------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMDKI 663
RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDI+FPGEMDKI
Sbjct: 673 LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKI 732
Query: 664 SRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF 723
SRHNGILIPPERVKK+SKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF
Sbjct: 733 SRHNGILIPPERVKKHSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF 792
Query: 724 PQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKEARV 783
PQDLLQERDNLELR VNYILYENGKPIRGISGTSIQLVRTCLLLNWD+DKKSSSI+EARV
Sbjct: 793 PQDLLQERDNLELRVVNYILYENGKPIRGISGTSIQLVRTCLLLNWDQDKKSSSIEEARV 852
Query: 784 SFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE----------------- 843
SFVEVSTNGLV NFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE
Sbjct: 853 SFVEVSTNGLVLNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYSKTR 912
Query: 844 VPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEIRNS 903
V QS S+NQGTIRTLRNKERQS IILSASNCLQIDLFNDVKD NVIKESSKKDPLEIRNS
Sbjct: 913 VAQSLSQNQGTIRTLRNKERQSLIILSASNCLQIDLFNDVKDYNVIKESSKKDPLEIRNS 972
Query: 904 LGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNSDPS 963
GPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNL QTFQVIKYYL+DENGGILNSDPS
Sbjct: 973 FGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLTQTFQVIKYYLIDENGGILNSDPS 1032
Query: 964 NNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIIIVEV 1023
+NIVLNTFNLNWHFL HNYH SYCEETP RISLGQFFFENVCIAKNRPHLKSGQIIIV+V
Sbjct: 1033 SNIVLNTFNLNWHFLYHNYHHSYCEETPTRISLGQFFFENVCIAKNRPHLKSGQIIIVQV 1092
Query: 1024 DSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVLEVR 1083
DSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDIT GLPKVEQVLEVR
Sbjct: 1093 DSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1152
Query: 1084 SIDSISISLQKEIE-----------------VG----------------MSVYRSQGVEI 1143
SIDSISISLQK IE +G VYRSQGVEI
Sbjct: 1153 SIDSISISLQKRIEGWNERITKILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEI 1212
Query: 1144 HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK 1187
HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK
Sbjct: 1213 HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK 1272
BLAST of Sed0017787 vs. NCBI nr
Match:
QWQ50133.1 (RNA polymerase beta'' subunit [Cyclanthera pedata])
HSP 1 Score: 2178.3 bits (5643), Expect = 0.0e+00
Identity = 1127/1312 (85.90%), Postives = 1144/1312 (87.20%), Query Frame = 0
Query: 4 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
QDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 119 QDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 178
Query: 64 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 179 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 238
Query: 124 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 239 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 298
Query: 184 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
IY GPRCIGIRNQDIGIGLINR ITFQTQPISIRTPFTCRSTSWICRLCYGR
Sbjct: 299 IYTGPRCIGIRNQDIGIGLINRLITFQTQPISIRTPFTCRSTSWICRLCYGRSPTQGDLV 358
Query: 244 ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
+AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 359 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 418
Query: 304 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 419 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 478
Query: 364 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY
Sbjct: 479 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 538
Query: 424 KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
KDQDQINVHSLSVERRYISSLSVNNDKVR KFYGP+L GKNESGIL YSELNPILCTGQS
Sbjct: 539 KDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGPNLSGKNESGILYYSELNPILCTGQS 598
Query: 484 NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFFVEIVFLL 543
NLTYPAIFHGN DLLAKRRRNGFII+FDSLQEREKELP TSGI IEIPING F L
Sbjct: 599 NLTYPAIFHGNSDLLAKRRRNGFIIEFDSLQEREKELPPTSGIWIEIPINGIFRRNSILA 658
Query: 544 ---------------------ISMILNTEEIL---------------------------- 603
+ IL E+++
Sbjct: 659 YFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMKVDRFFFIPEEVHI 718
Query: 604 -------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMDKI 663
RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDI+FPGEMDKI
Sbjct: 719 LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKI 778
Query: 664 SRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF 723
SRHNGILIPPERVKK+SKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF
Sbjct: 779 SRHNGILIPPERVKKHSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF 838
Query: 724 PQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKEARV 783
PQDLLQERDNLELR VNYILYENGKPIRGISGTSIQLVRTCLLLNWD+DKKSSSI+EARV
Sbjct: 839 PQDLLQERDNLELRVVNYILYENGKPIRGISGTSIQLVRTCLLLNWDQDKKSSSIEEARV 898
Query: 784 SFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE----------------- 843
SFVEVSTNGLV NFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE
Sbjct: 899 SFVEVSTNGLVLNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYSKTR 958
Query: 844 VPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEIRNS 903
V QS S+NQGTIRTLRNKERQS IILSASNCLQIDLFNDVKD NVIKESSKKDPLEIRNS
Sbjct: 959 VAQSLSQNQGTIRTLRNKERQSLIILSASNCLQIDLFNDVKDYNVIKESSKKDPLEIRNS 1018
Query: 904 LGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNSDPS 963
GPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNL QTFQVIKYYL+DENGGILNSDPS
Sbjct: 1019 FGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLTQTFQVIKYYLIDENGGILNSDPS 1078
Query: 964 NNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIIIVEV 1023
+NIVLNTFNLNWHFL HNYH SYCEETP RISLGQFFFENVCIAKNRPHLKSGQIIIV+V
Sbjct: 1079 SNIVLNTFNLNWHFLYHNYHHSYCEETPTRISLGQFFFENVCIAKNRPHLKSGQIIIVQV 1138
Query: 1024 DSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVLEVR 1083
DSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDIT GLPKVEQVLEVR
Sbjct: 1139 DSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1198
Query: 1084 SIDSISISLQKEIE-----------------VG----------------MSVYRSQGVEI 1143
SIDSISISLQK IE +G VYRSQGVEI
Sbjct: 1199 SIDSISISLQKRIEGWNERITKILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEI 1258
Query: 1144 HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK 1187
HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK
Sbjct: 1259 HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK 1318
BLAST of Sed0017787 vs. NCBI nr
Match:
QIT04040.1 (RNA polymerase beta'' subunit [Luffa aegyptiaca] >QKX48549.1 RNA polymerase beta'' subunit [Luffa aegyptiaca])
HSP 1 Score: 2174.8 bits (5634), Expect = 0.0e+00
Identity = 1127/1317 (85.57%), Postives = 1145/1317 (86.94%), Query Frame = 0
Query: 4 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 73 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 132
Query: 64 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192
Query: 124 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 193 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 252
Query: 184 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR
Sbjct: 253 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 312
Query: 244 ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
+AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 313 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 372
Query: 304 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
RHGHPAFLCYIDL VTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 373 RHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 432
Query: 364 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSC CSVVPFSLY
Sbjct: 433 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLY 492
Query: 424 KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
KDQDQINVHSLSVERRYISSLSVNNDKVR KFYGPDL GKNESGI DYSELNPILCTGQS
Sbjct: 493 KDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQS 552
Query: 484 NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFFVEIVFLL 543
NLTYPAIFHGN DLLAKRRRNGFIIQF+SLQEREKELP SGISIEIPING F L
Sbjct: 553 NLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRNSILA 612
Query: 544 ---------------------ISMILNTEEIL---------------------------- 603
+ IL E+++
Sbjct: 613 YFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEV 672
Query: 604 ---------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMD 663
RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDI+FPGEMD
Sbjct: 673 HILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMD 732
Query: 664 KISRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 723
KISRHNGILIPPERVKKNSKKS KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV
Sbjct: 733 KISRHNGILIPPERVKKNSKKSKKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 792
Query: 724 TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 783
TLFPQDLLQERDNLELR VNYILY NGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSI+E
Sbjct: 793 TLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEE 852
Query: 784 ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE-------------- 843
AR SFVEVSTNGLV+NFLRIDLVK DTSYIRKRKDPSGSGLIFNNE
Sbjct: 853 ARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYS 912
Query: 844 ---VPQSFSKNQGTIRTL--RNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPL 903
VPQS S+NQGTIRTL RNKERQS IILSASNCLQ+DLFNDVKD NVIKESSKKDPL
Sbjct: 913 KTRVPQSLSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDYNVIKESSKKDPL 972
Query: 904 EIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGIL 963
EIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDN KQTFQV+KYYLMDENGGIL
Sbjct: 973 EIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNFKQTFQVLKYYLMDENGGIL 1032
Query: 964 NSDPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQI 1023
NSDP +NIV NTFNLNWHFL HNYH SYCEETP RISLGQFFFENVCIAKNRPHLKSGQI
Sbjct: 1033 NSDPCSNIVFNTFNLNWHFLHHNYHNSYCEETPTRISLGQFFFENVCIAKNRPHLKSGQI 1092
Query: 1024 IIVEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQ 1083
IIV+VDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDIT GLPKVEQ
Sbjct: 1093 IIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQ 1152
Query: 1084 VLEVRSIDSISISLQKEIE-----------------VG----------------MSVYRS 1143
VLEVRSIDSIS+SL+K IE +G VYRS
Sbjct: 1153 VLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRS 1212
Query: 1144 QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVL 1187
QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVL
Sbjct: 1213 QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVL 1272
BLAST of Sed0017787 vs. ExPASy Swiss-Prot
Match:
Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 2128.6 bits (5514), Expect = 0.0e+00
Identity = 1109/1318 (84.14%), Postives = 1132/1318 (85.89%), Query Frame = 0
Query: 4 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 77 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 136
Query: 64 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 137 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 196
Query: 124 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI VSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 197 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIFIQTLIGRVLADD 256
Query: 184 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
IYMGPRCIG+RNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR
Sbjct: 257 IYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 316
Query: 244 ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
+AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 317 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 376
Query: 304 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
RHGHPAFLCYIDL VTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 377 RHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 436
Query: 364 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSC CS+VPFSLY
Sbjct: 437 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSLVPFSLY 496
Query: 424 KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
KDQDQINVHSL VERRYISSLSVNNDKV KFYGPDL GKNE+GI DYSELNPILCTGQS
Sbjct: 497 KDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNENGIPDYSELNPILCTGQS 556
Query: 484 NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFFVEIVFLL 543
NLTYPAIFHGN DLLAKRRRNGFIIQF+SLQEREKEL SGISIEIPING F L
Sbjct: 557 NLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIPINGIFRRNSILA 616
Query: 544 ---------------------ISMILNTEEIL---------------------------- 603
+ IL E+++
Sbjct: 617 FFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEV 676
Query: 604 ---------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMD 663
RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDI+FPGEMD
Sbjct: 677 HILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMD 736
Query: 664 KISRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 723
KISRHNGILIPPERVKKNSKKS K KNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV
Sbjct: 737 KISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 796
Query: 724 TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 783
LFPQDLLQERDNLELR NYILY NGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSI++
Sbjct: 797 KLFPQDLLQERDNLELRVANYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIED 856
Query: 784 ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE-------------- 843
AR SFVEVSTNGLV+NFLRIDL K DT+YIRKRKDPSGSGLIFNNE
Sbjct: 857 ARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSGLIFNNESDRTNINPFFSIYS 916
Query: 844 ---VPQSFSKNQGTIRTL--RNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPL 903
VPQS S+NQGTIRTL RNKERQS IILSASNCLQIDLFNDVKD NVIKESSKKDPL
Sbjct: 917 KTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQIDLFNDVKDYNVIKESSKKDPL 976
Query: 904 -EIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGI 963
IRNSLGPLGAAPQIVNFYSFY LITHNPISLTKYLQLDNLKQ FQV+KYYLMDENGGI
Sbjct: 977 ISIRNSLGPLGAAPQIVNFYSFYYLITHNPISLTKYLQLDNLKQIFQVLKYYLMDENGGI 1036
Query: 964 LNSDPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQ 1023
LNSDP NIV NTFNLNWHFL NYH +YCEETP RISLGQFFFENVCIAKNRPHLKSGQ
Sbjct: 1037 LNSDPCINIVFNTFNLNWHFLHDNYHNNYCEETPTRISLGQFFFENVCIAKNRPHLKSGQ 1096
Query: 1024 IIIVEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVE 1083
IIIV+VDS+VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDIT GLPKVE
Sbjct: 1097 IIIVQVDSLVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVE 1156
Query: 1084 QVLEVRSIDSISISLQKEIE-----------------VG----------------MSVYR 1143
QVLEVRSIDSIS+SL+K IE +G VYR
Sbjct: 1157 QVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYR 1216
Query: 1144 SQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAV 1187
SQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAV
Sbjct: 1217 SQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAV 1276
BLAST of Sed0017787 vs. ExPASy Swiss-Prot
Match:
B1A925 (DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 1845.9 bits (4780), Expect = 0.0e+00
Identity = 967/1315 (73.54%), Postives = 1052/1315 (80.00%), Query Frame = 0
Query: 4 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR+TDPFNPVHIMS
Sbjct: 73 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRVTDPFNPVHIMS 132
Query: 64 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192
Query: 124 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP NR +PERIFIQTLIGRVLADD
Sbjct: 193 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPKNRTMPERIFIQTLIGRVLADD 252
Query: 184 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
IYMGPRCI IRNQDIGIGL+NRFITF+TQ ISIRTPFTCRSTSWICRLCYGR
Sbjct: 253 IYMGPRCIAIRNQDIGIGLVNRFITFRTQSISIRTPFTCRSTSWICRLCYGRSPTHGDLV 312
Query: 244 ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
+AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+R+PSNGKIKFNEDLVHPTRT
Sbjct: 313 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRSPSNGKIKFNEDLVHPTRT 372
Query: 304 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
RHGHPAFLCYIDLSV IESEDIIHNVTIPPKS LLVQNDQYVESEQVIAEIRAGTYTLN
Sbjct: 373 RHGHPAFLCYIDLSVVIESEDIIHNVTIPPKSFLLVQNDQYVESEQVIAEIRAGTYTLNY 432
Query: 364 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
KERVRKHIYS+SEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGS S+VPFSL+
Sbjct: 433 KERVRKHIYSNSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSSRSSLVPFSLH 492
Query: 424 KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
KDQDQ+N+HSLSVE+ ISSL+VNND+ RHKF+ + K + GI DYSE + IL TG
Sbjct: 493 KDQDQMNIHSLSVEQESISSLAVNNDQGRHKFFSSNFSDKKKCGIPDYSEFHRILDTGHC 552
Query: 484 NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFF------- 543
NL Y A H N DLLAKRRRN FII F S+QE+EKEL SGISIEIPING F
Sbjct: 553 NLIYFASLHENSDLLAKRRRNRFIIPFQSIQEQEKELMPRSGISIEIPINGIFRRNSILA 612
Query: 544 ---------------------------------------------------------VEI 603
V I
Sbjct: 613 FFDDPRYRRKSSGILKYGTIGAHSIVKKEDVIEYRGVKKFKTKYQMKVDRFFFIPEEVHI 672
Query: 604 VFLLISMILNTEEIL----RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMDKI 663
+ S+++ I+ R+TL+IRS+VGGLVRVE+KKK IEL+IFSGDI+FPG+ DKI
Sbjct: 673 LPESSSIMVRNNSIIGVDTRITLNIRSQVGGLVRVERKKKSIELQIFSGDIHFPGKTDKI 732
Query: 664 SRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTL 723
SRH+GILIPP R K NSK+S KLKNWIYVQ ITPTKKKYFV VRPV YE+ADGINL TL
Sbjct: 733 SRHSGILIPPGRGKTNSKESKKLKNWIYVQRITPTKKKYFVLVRPVATYEIADGINLATL 792
Query: 724 FPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKEAR 783
FPQDL +E+DN++LR VNYILY NGKP+RGI TSIQLVRTCL+LNWD+D KSSS++E R
Sbjct: 793 FPQDLFREKDNMQLRVVNYILYGNGKPVRGIFDTSIQLVRTCLVLNWDQDNKSSSVEEVR 852
Query: 784 VSFVEVSTNGLVQNFLRIDLVKCDT--SYIRKRKDPSGSGLIFNN------------EVP 843
FVEVSTN L+++FLRIDLVK + SYIRKR DPSGSGLI +N +
Sbjct: 853 TFFVEVSTNSLIRDFLRIDLVKSQSHISYIRKRNDPSGSGLISDNGSDRINPFYYKERIQ 912
Query: 844 QSFSKNQGTIRTL--RNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPL-EIRN 903
QS SKN GTIRTL RNKE QS IILS+SNC Q+ FN VK NVIK+S KKDPL IRN
Sbjct: 913 QSLSKNHGTIRTLLNRNKECQSLIILSSSNCFQMGPFNHVKYHNVIKQSIKKDPLIPIRN 972
Query: 904 SLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNSDP 963
SLGP+G A QI NFYS Y LITHN IS+TKY QLDNL Q F+VIKYYLMDE G + N DP
Sbjct: 973 SLGPVGTAIQIANFYSIYHLITHNQISVTKYFQLDNLNQIFEVIKYYLMDETGRVYNPDP 1032
Query: 964 SNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIIIVE 1023
+NI+LN FNLNW+FL NYH +YCEET ISLGQF ENVC+AKN PHLKSGQ++IV+
Sbjct: 1033 CSNIILNPFNLNWYFLYQNYHHNYCEETSTIISLGQFICENVCLAKNGPHLKSGQVLIVQ 1092
Query: 1024 VDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVLEV 1083
VDSVVIRSAKPYLAT GATVH HYGEILYEGDTLVTFIYEKSRSGDIT GLPKVEQVLEV
Sbjct: 1093 VDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEV 1152
Query: 1084 RSIDSISISLQKEIE-----------------VG----------------MSVYRSQGVE 1143
RSIDSIS++L+K +E +G VYRSQGV+
Sbjct: 1153 RSIDSISLNLEKRVEGWNKRITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQ 1212
Query: 1144 IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIT 1187
IHNRHIEIIVRQITSKVLVSE+GMSNVF PGELIGLLRAERTGRALEEAICYRA+LLGIT
Sbjct: 1213 IHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEAICYRAILLGIT 1272
BLAST of Sed0017787 vs. ExPASy Swiss-Prot
Match:
Q49L08 (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 1838.5 bits (4761), Expect = 0.0e+00
Identity = 962/1316 (73.10%), Postives = 1047/1316 (79.56%), Query Frame = 0
Query: 4 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
QDAEQQSLILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 77 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMS 136
Query: 64 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 137 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 196
Query: 124 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRG+SVSP N M+PERIFIQTLIGRVLADD
Sbjct: 197 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGVSVSPRNGMMPERIFIQTLIGRVLADD 256
Query: 184 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
IYMGPRCI IRNQDIGIGL+NRFITF+TQPISIRTPFTCRSTSWICRLCYGR
Sbjct: 257 IYMGPRCIAIRNQDIGIGLVNRFITFRTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 316
Query: 244 ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
+AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFN+DLVHPTRT
Sbjct: 317 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNDDLVHPTRT 376
Query: 304 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
RHGHPAFLC IDL VTIESEDI+HNVTIPPKS LLVQN+QYVESEQVIAEIRAGTYT NL
Sbjct: 377 RHGHPAFLCSIDLYVTIESEDILHNVTIPPKSFLLVQNNQYVESEQVIAEIRAGTYTFNL 436
Query: 364 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
KERVRKHIYS+SEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSC S VPFSLY
Sbjct: 437 KERVRKHIYSESEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCRSSRVPFSLY 496
Query: 424 KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGK-NESGILDYSELNPILCTGQ 483
KDQDQ+N+ S ERRYISSLSVNND++R++ D GK E I DYSELN I+
Sbjct: 497 KDQDQMNLRSTERERRYISSLSVNNDQMRYELCSSDFSGKIKEDRIPDYSELNRIISIVH 556
Query: 484 SNLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGF------- 543
NL YP F N DLLAKRRRN F+I S+QER+KEL SGISIE+PING
Sbjct: 557 CNLKYPTTFDENSDLLAKRRRNRFLIPLQSIQERKKELMPHSGISIELPINGILRRNSIL 616
Query: 544 --------------FVEIVFLLISMILNTEEIL--------------------------- 603
++ L + ++ E+++
Sbjct: 617 AYFDDPRYRRKSSGIIKYGTLGVHSVVKKEDLIEYRGIKEFKQKCQMKLDPFFFIPEEVH 676
Query: 604 --------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMDK 663
R+ L+ RSRVGGLVRVE+KKKRIELKIFSGDI+FPGE DK
Sbjct: 677 IFPESSSIMVRNNSLIGVDTRIALNTRSRVGGLVRVERKKKRIELKIFSGDIHFPGETDK 736
Query: 664 ISRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVT 723
ISRH+GILIPP K N K+S K KNWIYVQ ITPTKKKYFV VRPV+ YE+ DGINL T
Sbjct: 737 ISRHSGILIPPGTGKTNFKESKKWKNWIYVQRITPTKKKYFVLVRPVVTYEVLDGINLAT 796
Query: 724 LFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKEA 783
LFP DLLQERDN++LR VNYI+Y NGKPIRGIS TSIQLVRTCL+LNWD+DKKSSSI+EA
Sbjct: 797 LFPPDLLQERDNMQLRVVNYIVYRNGKPIRGISDTSIQLVRTCLILNWDQDKKSSSIEEA 856
Query: 784 RVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE--------------- 843
SFVEVSTNGL+++FLRIDLVK SY+RKR DPSGSGLI +++
Sbjct: 857 HTSFVEVSTNGLIRDFLRIDLVKFPISYLRKRNDPSGSGLISDSDNVSDHTNSNPFYSKT 916
Query: 844 -VPQSFSKNQGTIRTL--RNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDP-LE 903
+ Q S+NQGTIRTL +NKE S IILS+SNC ++ FN K NVIKES KKDP ++
Sbjct: 917 KIQQLLSQNQGTIRTLLNKNKECPSLIILSSSNCFRMGPFNAGKYHNVIKESIKKDPIIK 976
Query: 904 IRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILN 963
IRNS+GPLG Q VNFYSFY LITHNPI +TKYLQL+NLKQTFQVI YYLMDENG ILN
Sbjct: 977 IRNSIGPLGTVLQFVNFYSFYYLITHNPILVTKYLQLENLKQTFQVINYYLMDENGRILN 1036
Query: 964 SDPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQII 1023
D +NIVLN+FNLNW+FL HNY+ +Y EE ISLGQF ENVCI+KN PHLKSGQ++
Sbjct: 1037 PDSCSNIVLNSFNLNWYFLHHNYYHNYFEERSTIISLGQFICENVCISKNGPHLKSGQVL 1096
Query: 1024 IVEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQV 1083
IV+VDSVVIRSAKPYLAT GATVH HYGEILYEGDTLVTFIYEKSRSGDIT GLPKVEQV
Sbjct: 1097 IVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQV 1156
Query: 1084 LEVRSIDSISISLQKEIE-----------------VG----------------MSVYRSQ 1143
LEVRSIDSIS++L+K IE +G VYRSQ
Sbjct: 1157 LEVRSIDSISMNLEKRIEGWNEHIKKILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQ 1216
Query: 1144 GVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLL 1187
GV+IHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGLLRA RTGRALEE+ICYRA+LL
Sbjct: 1217 GVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAARTGRALEESICYRAILL 1276
BLAST of Sed0017787 vs. ExPASy Swiss-Prot
Match:
B1NWE0 (DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 1830.5 bits (4740), Expect = 0.0e+00
Identity = 970/1321 (73.43%), Postives = 1051/1321 (79.56%), Query Frame = 0
Query: 4 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
QDAEQQSLILEKH+HYGNVHAVEKLRQSIEIWYATSEYLRQEMN NFRMT+PFNPVHIMS
Sbjct: 77 QDAEQQSLILEKHYHYGNVHAVEKLRQSIEIWYATSEYLRQEMNLNFRMTEPFNPVHIMS 136
Query: 64 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
FSGARGN SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 137 FSGARGNTSQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 196
Query: 124 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
AVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISVSP N M+PERIFIQT IGRVLAD+
Sbjct: 197 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMPERIFIQTFIGRVLADN 256
Query: 184 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
IYMG RCI IRNQDIGIGL NRFITF+TQ ISIRTPFTCRSTSWICRLCYGR
Sbjct: 257 IYMGLRCIAIRNQDIGIGLANRFITFRTQTISIRTPFTCRSTSWICRLCYGRSPTHGDLV 316
Query: 244 ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
+AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFNEDLVHP RT
Sbjct: 317 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPIRT 376
Query: 304 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
RHGHPAFLCYIDL VTI+S+DIIHNVTIPPKS LLVQNDQYVESEQVIAEIRAG YTLN
Sbjct: 377 RHGHPAFLCYIDLYVTIKSQDIIHNVTIPPKSFLLVQNDQYVESEQVIAEIRAGAYTLNF 436
Query: 364 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
KE+VRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSG SC S+VPFSL+
Sbjct: 437 KEKVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGSSCRSSIVPFSLH 496
Query: 424 KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
KDQDQ+NVHSLSV+RRYISS SVNND+V+HKF+ D GK ESGI DYSELN +CTG
Sbjct: 497 KDQDQMNVHSLSVKRRYISSPSVNNDQVKHKFFSSDFSGKKESGIPDYSELNRSICTGHC 556
Query: 484 NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPING--------- 543
NL Y I + N DLLAKRRRN FII F S+QEREKEL T S ISIEIPING
Sbjct: 557 NLIYSTILYKNSDLLAKRRRNKFIIPFQSIQEREKELMTQSAISIEIPINGIFRRNSVFA 616
Query: 544 ----------------------------------------------------FFVEIVFL 603
F E V++
Sbjct: 617 YFDDPQYRKKSSGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQTKVDRFFFIPEEVYI 676
Query: 604 L---ISMILNTEEIL----RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMDKI 663
L S+++ I+ ++ L+ RSRVGGLVRVE+KKK++ELKIFSGDI+FPGE DKI
Sbjct: 677 LPESSSLMVRNNSIIGVDTQIALNTRSRVGGLVRVERKKKKMELKIFSGDIHFPGETDKI 736
Query: 664 SRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTL 723
SRH+ ILIPP VK NSK+S K+KNWIY+Q ITPTKKKYFV VRPVIIYE+A+GINL TL
Sbjct: 737 SRHSDILIPPGTVKTNSKESKKVKNWIYIQRITPTKKKYFVLVRPVIIYEIANGINLETL 796
Query: 724 FPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKEAR 783
FPQDLLQE+DNL+LR VNYILY GKPIRGIS TSIQLVRTCL+LNWD+DKKSSSI+EAR
Sbjct: 797 FPQDLLQEKDNLKLRVVNYILYGTGKPIRGISDTSIQLVRTCLVLNWDQDKKSSSIEEAR 856
Query: 784 VSFVEVSTNGLVQNFLRIDLVKCDTSYI-RKRKDPSGSGLIFNN---------------- 843
+FVE+STNGL+++FLRI+LVK SYI RKR DPSGS I NN
Sbjct: 857 AAFVEISTNGLIRDFLRINLVKFHISYIGRKRNDPSGSEPISNNGSDRTNINPFYPIYSK 916
Query: 844 -EVPQSFSKNQGTIRTLR--NKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDP-L 903
V QS +NQGTI TL NKE QS IILS+SNC Q+D FNDVK NVIKES K+DP +
Sbjct: 917 TRVQQSLKQNQGTISTLLNINKECQSLIILSSSNCFQMDPFNDVKHHNVIKESIKRDPII 976
Query: 904 EIRNSLGPLGAAPQIVNFYSFY--QLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGG 963
IRNSLGPLG A QI NFY FY LITHN IS+TKY +L NLKQTFQV+KYYLMDENG
Sbjct: 977 PIRNSLGPLGTALQIANFYLFYHLNLITHNQISVTKYSKLYNLKQTFQVLKYYLMDENGR 1036
Query: 964 ILNSDPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSG 1023
I+N DP +N VLN FNLNW+FL HN YCE ISLGQF EN+C+AKN PHLKSG
Sbjct: 1037 IVNPDPCSNSVLNPFNLNWYFLHHN----YCESFFTIISLGQFICENLCMAKNGPHLKSG 1096
Query: 1024 QIIIVEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKV 1083
Q+IIV +DSVVIRSAKPYLAT GATVH HYGEILYEG+TLVTFIYEKSRSGDIT GLPKV
Sbjct: 1097 QVIIVHIDSVVIRSAKPYLATPGATVHGHYGEILYEGNTLVTFIYEKSRSGDITQGLPKV 1156
Query: 1084 EQVLEVRSIDSISISLQKEIE-----------------VG----------------MSVY 1143
EQVLEVRSIDSISI+L+K +E +G VY
Sbjct: 1157 EQVLEVRSIDSISINLEKRVEGWNECITRILGIPWGFLIGTELTIVQSRISLVNKIQKVY 1216
Query: 1144 RSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRA 1187
RSQGV+IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICY A
Sbjct: 1217 RSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYGA 1276
BLAST of Sed0017787 vs. ExPASy Swiss-Prot
Match:
Q0ZJ30 (DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera OX=29760 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 1830.1 bits (4739), Expect = 0.0e+00
Identity = 970/1322 (73.37%), Postives = 1039/1322 (78.59%), Query Frame = 0
Query: 4 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN NFRMTDPFNPVHIMS
Sbjct: 77 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNTNFRMTDPFNPVHIMS 136
Query: 64 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 137 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 196
Query: 124 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP N MIPERIFIQTLIGRVLADD
Sbjct: 197 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMIPERIFIQTLIGRVLADD 256
Query: 184 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
IYMGPRCI IRNQDIGIGL+NRFITFQ Q ISIRTPFTC+STSWICRLCYGR
Sbjct: 257 IYMGPRCIAIRNQDIGIGLVNRFITFQAQTISIRTPFTCKSTSWICRLCYGRSPTHGDLV 316
Query: 244 ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
+AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFNED VHPTRT
Sbjct: 317 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDWVHPTRT 376
Query: 304 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
RHGHPAFLCYIDL VTIESE IIHNV IPPKS LLVQNDQYVESEQVIAEIRAGTYT N
Sbjct: 377 RHGHPAFLCYIDLYVTIESEGIIHNVNIPPKSFLLVQNDQYVESEQVIAEIRAGTYTFNF 436
Query: 364 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
KERVRKHIYSDSEGEMHWSTDVYHAPEFTY NVHLLPKTSHLWILSGGSC S+VPFS++
Sbjct: 437 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILSGGSCRFSIVPFSIH 496
Query: 424 KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
KDQDQ++V SLSVERRYIS+ SV ND+V H+F+ DL GK E I YSELN I+ TG+
Sbjct: 497 KDQDQMSVRSLSVERRYISNPSVTNDQVIHEFFSSDLSGKKEGRIPAYSELNRIIYTGRY 556
Query: 484 NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFF------- 543
NL PAI H N DLLAKRRRN FII F S+QE EKEL SGISIEIPING F
Sbjct: 557 NLIDPAILHENSDLLAKRRRNRFIIPFQSIQEGEKELMPPSGISIEIPINGIFRRNSILA 616
Query: 544 ---------------------------------------------------------VEI 603
V I
Sbjct: 617 YFDDPRYRRNSSGITKYGTIEAHSIVKKEDLIEYRGVKEFKPKYQMKVDRFFFIPEEVHI 676
Query: 604 VFLLISMILNTEEIL----RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMDKI 663
+ S+++ I+ R+TL+ RSRV GLVRVE+KKKRIELKIFSGDI FPGE +KI
Sbjct: 677 LPGSASIMVRNNSIIGVDTRITLNTRSRVSGLVRVERKKKRIELKIFSGDIQFPGETNKI 736
Query: 664 SRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTL 723
SRH GILIPP KKNSK+S KLKNWIYVQ ITPTKKKYFV VRPV+ YE+ADGINL TL
Sbjct: 737 SRHIGILIPPGTRKKNSKESKKLKNWIYVQGITPTKKKYFVLVRPVVTYEIADGINLATL 796
Query: 724 FPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKEAR 783
FPQDLLQERDN+ L+ VNYILY NGKPIRGIS TSIQLVRTCL+LNW ++KKSS I++
Sbjct: 797 FPQDLLQERDNMHLQVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWYQEKKSSPIEKTH 856
Query: 784 VSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE---------------- 843
SF+EV TNGL+++FL I+LVK SY KR DPS SGLI +N
Sbjct: 857 ASFMEVRTNGLIRDFLTINLVKSYISYTGKRNDPSSSGLIADNGSDHTNINPFYSIYPKE 916
Query: 844 -----VPQSFSKNQGTIRTL--RNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKD 903
+ Q KNQGTIRTL RNKE QS IILS+SNC ++ FNDVK NVIKES KKD
Sbjct: 917 RIQQLLRQRQKKNQGTIRTLLNRNKECQSLIILSSSNCSRMGPFNDVKYHNVIKESIKKD 976
Query: 904 -PLEIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENG 963
P+ IRNSLGPLG A QI NFYSFY LITHN I +TKY QLDN KQTFQ +KYYLMDENG
Sbjct: 977 TPIPIRNSLGPLGTALQITNFYSFYHLITHNHILVTKYFQLDNFKQTFQTLKYYLMDENG 1036
Query: 964 GILNSDPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKS 1023
N DP +NI+LN FNLNW+FL HN YCEET ISLGQF ENVCIAKN PHLKS
Sbjct: 1037 ITYNPDPCSNIILNPFNLNWYFLHHN----YCEETSTIISLGQFICENVCIAKNGPHLKS 1096
Query: 1024 GQIIIVEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPK 1083
GQ++IV+VDSVVIRSAKPYLAT GATVH HYGEILYEGDTLVTFIYEKSRSGDIT GLPK
Sbjct: 1097 GQVLIVQVDSVVIRSAKPYLATLGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPK 1156
Query: 1084 VEQVLEVRSIDSISISLQKEIE-----------------VG----------------MSV 1143
VEQVLEVRSIDSIS++L+K +E +G V
Sbjct: 1157 VEQVLEVRSIDSISMNLEKRVEGWNEHITRILGIPWGFFIGAELTIAQSRISLVNKIQKV 1216
Query: 1144 YRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYR 1187
YRSQGV+IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRA EEAICYR
Sbjct: 1217 YRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRAFEEAICYR 1276
BLAST of Sed0017787 vs. ExPASy TrEMBL
Match:
A0A6H0EQ95 (DNA-directed RNA polymerase subunit beta'' OS=Sechium edule OX=184140 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 2256.9 bits (5847), Expect = 0.0e+00
Identity = 1162/1315 (88.37%), Postives = 1171/1315 (89.05%), Query Frame = 0
Query: 4 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 73 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 132
Query: 64 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192
Query: 124 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 193 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 252
Query: 184 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR
Sbjct: 253 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 312
Query: 244 ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
+AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 313 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 372
Query: 304 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 373 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 432
Query: 364 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY
Sbjct: 433 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 492
Query: 424 KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS
Sbjct: 493 KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 552
Query: 484 NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFF------- 543
NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPING F
Sbjct: 553 NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGIFRRNSILA 612
Query: 544 --------------------------------------------------VEIVFLL--- 603
V++ F +
Sbjct: 613 YFDDPQYRRNSSGITKYGTIGVHSILKKEDFLIEYRGVKDFKPKYQMQMKVDLFFFIPEE 672
Query: 604 -------ISMILNTEEIL----RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEM 663
S+++ I+ RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEM
Sbjct: 673 VHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEM 732
Query: 664 DKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 723
DKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV
Sbjct: 733 DKISRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 792
Query: 724 TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 783
TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSI E
Sbjct: 793 TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIXE 852
Query: 784 ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE-------------- 843
ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE
Sbjct: 853 ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYS 912
Query: 844 ---VPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEI 903
VPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEI
Sbjct: 913 KTRVPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEI 972
Query: 904 RNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNS 963
RNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNS
Sbjct: 973 RNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNS 1032
Query: 964 DPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIII 1023
DPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIII
Sbjct: 1033 DPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIII 1092
Query: 1024 VEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVL 1083
VEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVL
Sbjct: 1093 VEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVL 1152
Query: 1084 EVRSIDSISISLQKEIE-----------------VG----------------MSVYRSQG 1143
EVRSIDSISISLQK IE +G VYRSQG
Sbjct: 1153 EVRSIDSISISLQKRIEGWNERITRILGIPWEFLIGAELTIVQSRISLVNKIQKVYRSQG 1212
Query: 1144 VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG 1187
VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG
Sbjct: 1213 VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG 1272
BLAST of Sed0017787 vs. ExPASy TrEMBL
Match:
A0A6H0ESQ0 (DNA-directed RNA polymerase subunit beta'' OS=Cyclanthera pedata OX=198836 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 2178.3 bits (5643), Expect = 0.0e+00
Identity = 1127/1312 (85.90%), Postives = 1144/1312 (87.20%), Query Frame = 0
Query: 4 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
QDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 73 QDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 132
Query: 64 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192
Query: 124 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 193 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 252
Query: 184 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
IY GPRCIGIRNQDIGIGLINR ITFQTQPISIRTPFTCRSTSWICRLCYGR
Sbjct: 253 IYTGPRCIGIRNQDIGIGLINRLITFQTQPISIRTPFTCRSTSWICRLCYGRSPTQGDLV 312
Query: 244 ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
+AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 313 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 372
Query: 304 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 373 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 432
Query: 364 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY
Sbjct: 433 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 492
Query: 424 KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
KDQDQINVHSLSVERRYISSLSVNNDKVR KFYGP+L GKNESGIL YSELNPILCTGQS
Sbjct: 493 KDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGPNLSGKNESGILYYSELNPILCTGQS 552
Query: 484 NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFFVEIVFLL 543
NLTYPAIFHGN DLLAKRRRNGFII+FDSLQEREKELP TSGI IEIPING F L
Sbjct: 553 NLTYPAIFHGNSDLLAKRRRNGFIIEFDSLQEREKELPPTSGIWIEIPINGIFRRNSILA 612
Query: 544 ---------------------ISMILNTEEIL---------------------------- 603
+ IL E+++
Sbjct: 613 YFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMKVDRFFFIPEEVHI 672
Query: 604 -------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMDKI 663
RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDI+FPGEMDKI
Sbjct: 673 LPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKI 732
Query: 664 SRHNGILIPPERVKKNSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF 723
SRHNGILIPPERVKK+SKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF
Sbjct: 733 SRHNGILIPPERVKKHSKKSKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLF 792
Query: 724 PQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKEARV 783
PQDLLQERDNLELR VNYILYENGKPIRGISGTSIQLVRTCLLLNWD+DKKSSSI+EARV
Sbjct: 793 PQDLLQERDNLELRVVNYILYENGKPIRGISGTSIQLVRTCLLLNWDQDKKSSSIEEARV 852
Query: 784 SFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE----------------- 843
SFVEVSTNGLV NFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE
Sbjct: 853 SFVEVSTNGLVLNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYSKTR 912
Query: 844 VPQSFSKNQGTIRTLRNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPLEIRNS 903
V QS S+NQGTIRTLRNKERQS IILSASNCLQIDLFNDVKD NVIKESSKKDPLEIRNS
Sbjct: 913 VAQSLSQNQGTIRTLRNKERQSLIILSASNCLQIDLFNDVKDYNVIKESSKKDPLEIRNS 972
Query: 904 LGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNSDPS 963
GPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNL QTFQVIKYYL+DENGGILNSDPS
Sbjct: 973 FGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLTQTFQVIKYYLIDENGGILNSDPS 1032
Query: 964 NNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIIIVEV 1023
+NIVLNTFNLNWHFL HNYH SYCEETP RISLGQFFFENVCIAKNRPHLKSGQIIIV+V
Sbjct: 1033 SNIVLNTFNLNWHFLYHNYHHSYCEETPTRISLGQFFFENVCIAKNRPHLKSGQIIIVQV 1092
Query: 1024 DSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVLEVR 1083
DSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDIT GLPKVEQVLEVR
Sbjct: 1093 DSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVR 1152
Query: 1084 SIDSISISLQKEIE-----------------VG----------------MSVYRSQGVEI 1143
SIDSISISLQK IE +G VYRSQGVEI
Sbjct: 1153 SIDSISISLQKRIEGWNERITKILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEI 1212
Query: 1144 HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK 1187
HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK
Sbjct: 1213 HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK 1272
BLAST of Sed0017787 vs. ExPASy TrEMBL
Match:
A0A6H0EPT4 (DNA-directed RNA polymerase subunit beta'' OS=Luffa aegyptiaca OX=3670 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 2174.8 bits (5634), Expect = 0.0e+00
Identity = 1127/1317 (85.57%), Postives = 1145/1317 (86.94%), Query Frame = 0
Query: 4 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 73 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 132
Query: 64 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192
Query: 124 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 193 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 252
Query: 184 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR
Sbjct: 253 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 312
Query: 244 ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
+AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 313 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 372
Query: 304 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
RHGHPAFLCYIDL VTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 373 RHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 432
Query: 364 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSC CSVVPFSLY
Sbjct: 433 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLY 492
Query: 424 KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
KDQDQINVHSLSVERRYISSLSVNNDKVR KFYGPDL GKNESGI DYSELNPILCTGQS
Sbjct: 493 KDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQS 552
Query: 484 NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFFVEIVFLL 543
NLTYPAIFHGN DLLAKRRRNGFIIQF+SLQEREKELP SGISIEIPING F L
Sbjct: 553 NLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSGISIEIPINGIFRRNSILA 612
Query: 544 ---------------------ISMILNTEEIL---------------------------- 603
+ IL E+++
Sbjct: 613 YFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEV 672
Query: 604 ---------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMD 663
RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDI+FPGEMD
Sbjct: 673 HILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMD 732
Query: 664 KISRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 723
KISRHNGILIPPERVKKNSKKS KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV
Sbjct: 733 KISRHNGILIPPERVKKNSKKSKKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 792
Query: 724 TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 783
TLFPQDLLQERDNLELR VNYILY NGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSI+E
Sbjct: 793 TLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEE 852
Query: 784 ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE-------------- 843
AR SFVEVSTNGLV+NFLRIDLVK DTSYIRKRKDPSGSGLIFNNE
Sbjct: 853 ARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYS 912
Query: 844 ---VPQSFSKNQGTIRTL--RNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPL 903
VPQS S+NQGTIRTL RNKERQS IILSASNCLQ+DLFNDVKD NVIKESSKKDPL
Sbjct: 913 KTRVPQSLSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDYNVIKESSKKDPL 972
Query: 904 EIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGIL 963
EIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDN KQTFQV+KYYLMDENGGIL
Sbjct: 973 EIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNFKQTFQVLKYYLMDENGGIL 1032
Query: 964 NSDPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQI 1023
NSDP +NIV NTFNLNWHFL HNYH SYCEETP RISLGQFFFENVCIAKNRPHLKSGQI
Sbjct: 1033 NSDPCSNIVFNTFNLNWHFLHHNYHNSYCEETPTRISLGQFFFENVCIAKNRPHLKSGQI 1092
Query: 1024 IIVEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQ 1083
IIV+VDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDIT GLPKVEQ
Sbjct: 1093 IIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQ 1152
Query: 1084 VLEVRSIDSISISLQKEIE-----------------VG----------------MSVYRS 1143
VLEVRSIDSIS+SL+K IE +G VYRS
Sbjct: 1153 VLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRS 1212
Query: 1144 QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVL 1187
QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVL
Sbjct: 1213 QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVL 1272
BLAST of Sed0017787 vs. ExPASy TrEMBL
Match:
A0A6H0ER02 (DNA-directed RNA polymerase subunit beta'' OS=Trichosanthes tricuspidata OX=654837 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 2167.9 bits (5616), Expect = 0.0e+00
Identity = 1124/1317 (85.35%), Postives = 1141/1317 (86.64%), Query Frame = 0
Query: 4 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 73 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 132
Query: 64 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192
Query: 124 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 193 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 252
Query: 184 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR
Sbjct: 253 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 312
Query: 244 ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
+AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 313 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 372
Query: 304 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
RHGHPAFLCYIDL VTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 373 RHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 432
Query: 364 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSC CS VPFSLY
Sbjct: 433 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSGVPFSLY 492
Query: 424 KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
KDQDQINVHSLSVERRYISSLSVNNDKVR KFYGPDL GKNESGI DYSELNPILCTGQS
Sbjct: 493 KDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGPDLSGKNESGITDYSELNPILCTGQS 552
Query: 484 NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFFVEIVFLL 543
NLTYPAIFHGN DLLAKRRRNGFIIQF+SL EREKELP SGISIEIPING F L
Sbjct: 553 NLTYPAIFHGNSDLLAKRRRNGFIIQFESLHEREKELPPPSGISIEIPINGIFRRNSILA 612
Query: 544 ---------------------ISMILNTEEIL---------------------------- 603
+ IL E+++
Sbjct: 613 YFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFISEEV 672
Query: 604 ---------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMD 663
RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDI+FPGEMD
Sbjct: 673 HILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMD 732
Query: 664 KISRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 723
KISRHNGILIPPERVKKNSKKS KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV
Sbjct: 733 KISRHNGILIPPERVKKNSKKSKKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 792
Query: 724 TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 783
TLFPQDLLQERDNLELR VNYILY NGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSI+E
Sbjct: 793 TLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEE 852
Query: 784 ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE-------------- 843
AR SFVEVSTNGLV+NFLRIDLVK DTSYIRKRKDPSGSGLIFNNE
Sbjct: 853 ARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYS 912
Query: 844 ---VPQSFSKNQGTIRTL--RNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPL 903
VPQS SKNQGTIRTL RNKERQS IILSASNCLQ+DLFNDVKD NVIKESSKKDPL
Sbjct: 913 KTRVPQSLSKNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDYNVIKESSKKDPL 972
Query: 904 EIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGIL 963
EIRNSLGPLG APQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQV+KYYLMDENGGIL
Sbjct: 973 EIRNSLGPLGVAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVLKYYLMDENGGIL 1032
Query: 964 NSDPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQI 1023
NSDP +NIV NTFNLNWHFL HNYH SYCEETP RISLGQFFFENVCIAKNRPHLKSGQI
Sbjct: 1033 NSDPCSNIVFNTFNLNWHFLHHNYHHSYCEETPTRISLGQFFFENVCIAKNRPHLKSGQI 1092
Query: 1024 IIVEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQ 1083
IIV+VDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDIT GLPKVEQ
Sbjct: 1093 IIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQ 1152
Query: 1084 VLEVRSIDSISISLQKEIE-----------------VG----------------MSVYRS 1143
VLEVRSIDSIS+SL+K IE +G VYRS
Sbjct: 1153 VLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRS 1212
Query: 1144 QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVL 1187
QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGLLRAERTGRALEEAICYRAVL
Sbjct: 1213 QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAVL 1272
BLAST of Sed0017787 vs. ExPASy TrEMBL
Match:
A0A6H0ESV4 (DNA-directed RNA polymerase subunit beta'' OS=Trichosanthes wallichiana OX=1144464 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 2167.9 bits (5616), Expect = 0.0e+00
Identity = 1124/1317 (85.35%), Postives = 1141/1317 (86.64%), Query Frame = 0
Query: 4 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS
Sbjct: 73 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 132
Query: 64 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192
Query: 124 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 183
AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD
Sbjct: 193 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLADD 252
Query: 184 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR-------- 243
IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR
Sbjct: 253 IYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 312
Query: 244 ---KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 303
+AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT
Sbjct: 313 ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTRT 372
Query: 304 RHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 363
RHGHPAFLCYIDL VTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL
Sbjct: 373 RHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTLNL 432
Query: 364 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFSLY 423
KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSC CS VPFSLY
Sbjct: 433 KERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSGVPFSLY 492
Query: 424 KDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTGQS 483
KDQDQINVHSLSVERRYISSLSVNNDKVR KFYGPDL GKNESGI DYSELNPILCTGQS
Sbjct: 493 KDQDQINVHSLSVERRYISSLSVNNDKVRQKFYGPDLSGKNESGITDYSELNPILCTGQS 552
Query: 484 NLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFFVEIVFLL 543
NLTYPAIFHGN DLLAKRRRNGFIIQF+SL EREKELP SGISIEIPING F L
Sbjct: 553 NLTYPAIFHGNSDLLAKRRRNGFIIQFESLHEREKELPPPSGISIEIPINGIFRRNSILA 612
Query: 544 ---------------------ISMILNTEEIL---------------------------- 603
+ IL E+++
Sbjct: 613 YFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFISEEV 672
Query: 604 ---------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMD 663
RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDI+FPGEMD
Sbjct: 673 HILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMD 732
Query: 664 KISRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 723
KISRHNGILIPPERVKKNSKKS KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV
Sbjct: 733 KISRHNGILIPPERVKKNSKKSKKLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 792
Query: 724 TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 783
TLFPQDLLQERDNLELR VNYILY NGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSI+E
Sbjct: 793 TLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEE 852
Query: 784 ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE-------------- 843
AR SFVEVSTNGLV+NFLRIDLVK DTSYIRKRKDPSGSGLIFNNE
Sbjct: 853 ARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDPSGSGLIFNNESDRTNINPFFSIYS 912
Query: 844 ---VPQSFSKNQGTIRTL--RNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPL 903
VPQS SKNQGTIRTL RNKERQS IILSASNCLQ+DLFNDVKD NVIKESSKKDPL
Sbjct: 913 KTRVPQSLSKNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDYNVIKESSKKDPL 972
Query: 904 EIRNSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGIL 963
EIRNSLGPLG APQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQV+KYYLMDENGGIL
Sbjct: 973 EIRNSLGPLGVAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVLKYYLMDENGGIL 1032
Query: 964 NSDPSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQI 1023
NSDP +NIV NTFNLNWHFL HNYH SYCEETP RISLGQFFFENVCIAKNRPHLKSGQI
Sbjct: 1033 NSDPCSNIVFNTFNLNWHFLHHNYHHSYCEETPTRISLGQFFFENVCIAKNRPHLKSGQI 1092
Query: 1024 IIVEVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQ 1083
IIV+VDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDIT GLPKVEQ
Sbjct: 1093 IIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQ 1152
Query: 1084 VLEVRSIDSISISLQKEIE-----------------VG----------------MSVYRS 1143
VLEVRSIDSIS+SL+K IE +G VYRS
Sbjct: 1153 VLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRS 1212
Query: 1144 QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVL 1187
QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGLLRAERTGRALEEAICYRAVL
Sbjct: 1213 QGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAVL 1272
BLAST of Sed0017787 vs. TAIR 10
Match:
ATCG00170.1 (DNA-directed RNA polymerase family protein )
HSP 1 Score: 1702.6 bits (4408), Expect = 0.0e+00
Identity = 909/1300 (69.92%), Postives = 997/1300 (76.69%), Query Frame = 0
Query: 4 QDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMS 63
QDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVH+MS
Sbjct: 73 QDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHMMS 132
Query: 64 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 123
FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT
Sbjct: 133 FSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDT 192
Query: 124 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP--GNRMIPERIFIQTLIGRVLA 183
AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP NRM+ ERIFIQTLIGRVLA
Sbjct: 193 AVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKNRMMSERIFIQTLIGRVLA 252
Query: 184 DDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGR------ 243
DDIY+G RC+ RNQD+GIGL+NR ITF TQ ISIRTPFTCRSTSWICRLCYGR
Sbjct: 253 DDIYIGSRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTSWICRLCYGRSPTHGD 312
Query: 244 -----KAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 303
+AVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAP NGKIKFNEDLVHPT
Sbjct: 313 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNGKIKFNEDLVHPT 372
Query: 304 RTRHGHPAFLCYIDLSVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVIAEIRAGTYTL 363
RTRHGHPAFLCYIDLSV IESEDIIH+VTIPPKS LLVQNDQYVESEQVIAEIR GTYT
Sbjct: 373 RTRHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQVIAEIREGTYTF 432
Query: 364 NLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCECSVVPFS 423
+ KERVRK+IYSDSEGEMHWSTDV HAPEFTYSNVHLLPKTSHLWILSGGSC S++ FS
Sbjct: 433 HFKERVRKYIYSDSEGEMHWSTDVSHAPEFTYSNVHLLPKTSHLWILSGGSCGSSLIRFS 492
Query: 424 LYKDQDQINVHSLSVERRYISSLSVNNDKVRHKFYGPDLYGKNESGILDYSELNPILCTG 483
++KDQDQ+N+ LS ER+ ISSLSVNND+V KF+ D + GI DYSELN L T
Sbjct: 493 IHKDQDQMNIPFLSAERKSISSLSVNNDQVSQKFFSSDFADPKKLGIYDYSELNGNLGTS 552
Query: 484 QSNLTYPAIFHGNFDLLAKRRRNGFIIQFDSLQEREKELPTTSGISIEIPINGFF----- 543
NL Y AIFH N DLLAKRRRN F+I F S+QE+EKE SGIS+EIPING F
Sbjct: 553 HYNLIYSAIFHENSDLLAKRRRNRFLIPFQSIQEQEKEFIPQSGISVEIPINGIFRRNSI 612
Query: 544 ----------------VEIVFLLISMILNTEEIL-------------------------- 603
++ L I+ E+++
Sbjct: 613 FAFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKIKTKYEMKVDRFFFIPEEV 672
Query: 604 ---------------------RLTLSIRSRVGGLVRVEKKKKRIELKIFSGDINFPGEMD 663
RLTL+IRS+VGGL+RVEKKKKRIELKIFSGDI+FP + D
Sbjct: 673 HILPESSAIMVQNYSIIGVDTRLTLNIRSQVGGLIRVEKKKKRIELKIFSGDIHFPDKTD 732
Query: 664 KISRHNGILIPPERVKKNSKKS-KLKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV 723
KISRH+GILIPP R KKNSK+S K KNWIYVQ ITPTKKK+FV VRPV YE+AD INL
Sbjct: 733 KISRHSGILIPPGRGKKNSKESKKFKNWIYVQRITPTKKKFFVLVRPVATYEIADSINLA 792
Query: 724 TLFPQDLLQERDNLELRAVNYILYENGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIKE 783
TLFPQDL +E+DN++LR NYILY NGKP RGIS TSIQLVRTCL+LNWD K+SS++E
Sbjct: 793 TLFPQDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLVLNWD---KNSSLEE 852
Query: 784 ARVSFVEVSTNGLVQNFLRIDLVKCDTSYIRKRKDPSGSGLIFNNE-------------V 843
R FVEVST GL+Q+F+RI LVK SYIRKR + SGLI + +
Sbjct: 853 VRAFFVEVSTKGLIQDFIRIGLVKSHISYIRKRNNSPDSGLISADHMNPFYSISPKSGIL 912
Query: 844 PQSFSKNQGTIRTL--RNKERQSFIILSASNCLQIDLFNDVKDLNVIKESSKKDPL-EIR 903
QS +N GTIR RNKE QS +ILS+SNC ++ FN VK NVI +S KK+ L I+
Sbjct: 913 QQSLRQNHGTIRMFLNRNKESQSLLILSSSNCFRMGPFNHVKHHNVINQSIKKNTLITIK 972
Query: 904 NSLGPLGAAPQIVNFYSFYQLITHNPISLTKYLQLDNLKQTFQVIKYYLMDENGGILNSD 963
NS GPLG A I NFYSF L+T+N ISL KY QLDNLK FQ I YL+DENG ILN D
Sbjct: 973 NSSGPLGTATPISNFYSFLPLLTYNQISLIKYFQLDNLKYIFQKINSYLIDENGIILNLD 1032
Query: 964 PSNNIVLNTFNLNWHFLPHNYHQSYCEETPPRISLGQFFFENVCIAKNRPHLKSGQIIIV 1023
P +N+VLN F LNW+FL NYH +YCEET ISLGQFF ENVCIAK PHLKSGQ++IV
Sbjct: 1033 PYSNVVLNPFKLNWYFLHQNYHHNYCEETSTIISLGQFFCENVCIAKKEPHLKSGQVLIV 1092
Query: 1024 EVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITHGLPKVEQVLE 1083
+ DS VIRSAKPYLAT GA VH HY EILYEGDTLVTFIYEKSRSGDIT GLPKVEQVLE
Sbjct: 1093 QRDSAVIRSAKPYLATPGAKVHGHYSEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 1152
Query: 1084 VRSIDSISISLQKEIE-----------------VG----------------MSVYRSQGV 1143
VRSIDSIS++L+K I+ +G VYRSQGV
Sbjct: 1153 VRSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 1212
Query: 1144 EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 1170
+IHNRHIEIIVRQITSKVLVSE+GMSNVF PGELIGLLRAERTGRALEEAICYRAVLLGI
Sbjct: 1213 QIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGI 1272
BLAST of Sed0017787 vs. TAIR 10
Match:
AT3G57660.1 (nuclear RNA polymerase A1 )
HSP 1 Score: 71.2 bits (173), Expect = 6.1e-12
Identity = 66/250 (26.40%), Postives = 105/250 (42.00%), Query Frame = 0
Query: 57 NPVHIMSFSGARG---NASQVHQLVGMRGLMSDPQGQMID---LP--------------I 116
N + +M+ SGA+G N Q+ +G + L +M+ LP I
Sbjct: 936 NCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFI 995
Query: 117 QSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHI------VVRRTD 176
GL EY C R+G+VDTAV+TS +GYL R L++ ++ + VR D
Sbjct: 996 SDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDAD 1055
Query: 177 CGTIR------GISVSPGN--RMIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGL 236
I+ G+ V + E Q ++ + ++D+ G D+ I L
Sbjct: 1056 GSIIQFQYGEDGVDVHRSSFIEKFKELTINQDMVLQKCSEDMLSGASSY---ISDLPISL 1115
Query: 237 ---INRFITFQTQPISIRTPFTCR-------STSWICRLCYGRKAVGIIAGQSIGEPGTQ 263
+F+ I + F + + + L + VG++A QS+GEP TQ
Sbjct: 1116 KKGAEKFVEAMPMNERIASKFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQ 1175
BLAST of Sed0017787 vs. TAIR 10
Match:
AT5G60040.1 (nuclear RNA polymerase C1 )
HSP 1 Score: 61.2 bits (147), Expect = 6.3e-09
Identity = 53/217 (24.42%), Postives = 93/217 (42.86%), Query Frame = 0
Query: 96 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 155
+ ++ GL+ TE+ G R+G+VDTAV+T+ GY++RRL++ ++ ++V + T+R
Sbjct: 835 VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDN--TVR 894
Query: 156 GIS----------------VSPGNRMIP---ERIFIQT-LIGRVLADDIYMGPRCIG--- 215
S + G P R+F++ + Y+ +
Sbjct: 895 NASGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKF 954
Query: 216 ----IRNQ------DIGIGLINRFITF-------QTQPISIRTPFTCRSTSWICRLCYGR 264
+R+ D + + F++ Q + + T + ++C R
Sbjct: 955 EEELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVFR 1014
BLAST of Sed0017787 vs. TAIR 10
Match:
AT5G60040.2 (nuclear RNA polymerase C1 )
HSP 1 Score: 61.2 bits (147), Expect = 6.3e-09
Identity = 53/217 (24.42%), Postives = 93/217 (42.86%), Query Frame = 0
Query: 96 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 155
+ ++ GL+ TE+ G R+G+VDTAV+T+ GY++RRL++ ++ ++V + T+R
Sbjct: 852 VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDN--TVR 911
Query: 156 GIS----------------VSPGNRMIP---ERIFIQT-LIGRVLADDIYMGPRCIG--- 215
S + G P R+F++ + Y+ +
Sbjct: 912 NASGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKF 971
Query: 216 ----IRNQ------DIGIGLINRFITF-------QTQPISIRTPFTCRSTSWICRLCYGR 264
+R+ D + + F++ Q + + T + ++C R
Sbjct: 972 EEELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVFR 1031
BLAST of Sed0017787 vs. TAIR 10
Match:
AT4G35800.1 (RNA polymerase II large subunit )
HSP 1 Score: 52.8 bits (125), Expect = 2.3e-06
Identity = 31/87 (35.63%), Postives = 46/87 (52.87%), Query Frame = 0
Query: 1061 EAICYRAVLLGITKTSLNTQSF--ISEASFQETARVLAKAALRGRIDWLRGLKENVVLGG 1120
+ + YR L+ IT+ +N + SF+ET +L AA D LRG+ EN++LG
Sbjct: 1394 DTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQ 1453
Query: 1121 MIPVGTGFREL-AHRSRQHNNIPLETP 1145
+ P+GTG EL + N I L+ P
Sbjct: 1454 LAPIGTGDCELYLNDEMLKNAIELQLP 1480
HSP 2 Score: 51.2 bits (121), Expect = 6.6e-06
Identity = 23/60 (38.33%), Postives = 41/60 (68.33%), Query Frame = 0
Query: 96 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 155
++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+ GT+R
Sbjct: 819 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 876
HSP 3 Score: 41.2 bits (95), Expect = 6.8e-03
Identity = 17/26 (65.38%), Postives = 20/26 (76.92%), Query Frame = 0
Query: 238 VGIIAGQSIGEPGTQLTLRTFHTGGV 264
+G +A QSIGEP TQ+TL TFH GV
Sbjct: 1084 IGCVAAQSIGEPATQMTLNTFHYAGV 1109
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
YP_009945407.1 | 0.0e+00 | 88.44 | RNA polymerase beta'' subunit [Sechium edule] >QOE55937.1 RNA polymerase beta'' ... | [more] |
QIT04123.1 | 0.0e+00 | 88.37 | RNA polymerase beta'' subunit [Sechium edule] | [more] |
YP_009751896.1 | 0.0e+00 | 85.90 | RNA polymerase beta'' subunit [Cyclanthera pedata] >QIT04714.1 RNA polymerase be... | [more] |
QWQ50133.1 | 0.0e+00 | 85.90 | RNA polymerase beta'' subunit [Cyclanthera pedata] | [more] |
QIT04040.1 | 0.0e+00 | 85.57 | RNA polymerase beta'' subunit [Luffa aegyptiaca] >QKX48549.1 RNA polymerase beta... | [more] |
Match Name | E-value | Identity | Description | |
Q4VZP3 | 0.0e+00 | 84.14 | DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P... | [more] |
B1A925 | 0.0e+00 | 73.54 | DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=... | [more] |
Q49L08 | 0.0e+00 | 73.10 | DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulu... | [more] |
B1NWE0 | 0.0e+00 | 73.43 | DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2... | [more] |
Q0ZJ30 | 0.0e+00 | 73.37 | DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera OX=29760 GN=rpoC2 P... | [more] |
Match Name | E-value | Identity | Description | |
A0A6H0EQ95 | 0.0e+00 | 88.37 | DNA-directed RNA polymerase subunit beta'' OS=Sechium edule OX=184140 GN=rpoC2 P... | [more] |
A0A6H0ESQ0 | 0.0e+00 | 85.90 | DNA-directed RNA polymerase subunit beta'' OS=Cyclanthera pedata OX=198836 GN=rp... | [more] |
A0A6H0EPT4 | 0.0e+00 | 85.57 | DNA-directed RNA polymerase subunit beta'' OS=Luffa aegyptiaca OX=3670 GN=rpoC2 ... | [more] |
A0A6H0ER02 | 0.0e+00 | 85.35 | DNA-directed RNA polymerase subunit beta'' OS=Trichosanthes tricuspidata OX=6548... | [more] |
A0A6H0ESV4 | 0.0e+00 | 85.35 | DNA-directed RNA polymerase subunit beta'' OS=Trichosanthes wallichiana OX=11444... | [more] |