Sed0017490 (gene) Chayote v1

Overview
NameSed0017490
Typegene
OrganismSechium edule (Chayote v1)
DescriptionDUF4228 domain protein
LocationLG05: 7184033 .. 7184452 (+)
RNA-Seq ExpressionSed0017490
SyntenySed0017490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTTCTTGAAAACCAAGAAACACAAACTCAGTGAATTCTTTGCTTTCCCCATGGGAAACTGTTTGAGGAGCAACAAAGTTACGGCGTATTCGCCCGCCGAGCAAGCGAAGAAGGTAGAGCGCATCGTCCCGGCTACTGGATCGGCGATCGGCGAGAAGCGAGAAGCGAGTGGCAGCGACGGCGGTGCCGGGATTGGTAGAGTGGTGAGGATTAAAGTGGTGATGTCTTGGAAAGAGTTGGAGCGGATTTTGAAGGATGGAGAGAATGATTGTGGTAGTTTTGAGAAATTGATTGGTGAATTGATGGTTAAAGGCAGGACGAGGATGGTTGTTTCAGATGCTGGAGTTGAAGAAGCTGTTGAGGATGAAAATGGAAGATGGAGTCCGGCTTTGGAAAGTATTCCCGAACATATAAATTAA

mRNA sequence

CATTTCTTGAAAACCAAGAAACACAAACTCAGTGAATTCTTTGCTTTCCCCATGGGAAACTGTTTGAGGAGCAACAAAGTTACGGCGTATTCGCCCGCCGAGCAAGCGAAGAAGGTAGAGCGCATCGTCCCGGCTACTGGATCGGCGATCGGCGAGAAGCGAGAAGCGAGTGGCAGCGACGGCGGTGCCGGGATTGGTAGAGTGGTGAGGATTAAAGTGGTGATGTCTTGGAAAGAGTTGGAGCGGATTTTGAAGGATGGAGAGAATGATTGTGGTAGTTTTGAGAAATTGATTGGTGAATTGATGGTTAAAGGCAGGACGAGGATGGTTGTTTCAGATGCTGGAGTTGAAGAAGCTGTTGAGGATGAAAATGGAAGATGGAGTCCGGCTTTGGAAAGTATTCCCGAACATATAAATTAA

Coding sequence (CDS)

ATGGGAAACTGTTTGAGGAGCAACAAAGTTACGGCGTATTCGCCCGCCGAGCAAGCGAAGAAGGTAGAGCGCATCGTCCCGGCTACTGGATCGGCGATCGGCGAGAAGCGAGAAGCGAGTGGCAGCGACGGCGGTGCCGGGATTGGTAGAGTGGTGAGGATTAAAGTGGTGATGTCTTGGAAAGAGTTGGAGCGGATTTTGAAGGATGGAGAGAATGATTGTGGTAGTTTTGAGAAATTGATTGGTGAATTGATGGTTAAAGGCAGGACGAGGATGGTTGTTTCAGATGCTGGAGTTGAAGAAGCTGTTGAGGATGAAAATGGAAGATGGAGTCCGGCTTTGGAAAGTATTCCCGAACATATAAATTAA

Protein sequence

MGNCLRSNKVTAYSPAEQAKKVERIVPATGSAIGEKREASGSDGGAGIGRVVRIKVVMSWKELERILKDGENDCGSFEKLIGELMVKGRTRMVVSDAGVEEAVEDENGRWSPALESIPEHIN
Homology
BLAST of Sed0017490 vs. NCBI nr
Match: XP_038902397.1 (uncharacterized protein LOC120089037 [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-16
Identity = 66/140 (47.14%), Postives = 81/140 (57.86%), Query Frame = 0

Query: 3   NCLRSNKVTAYS------PAEQAKKVERIVPATGSAIGEKREASGSDGGA---------- 62
           NC +SNKV A        P  +AKKVE   P  GSA+ + + A    GGA          
Sbjct: 4   NCFKSNKVMAQDEPEDLLPPIEAKKVEE-KPRPGSAMAKPKTAEARTGGASKKVVRFKLQ 63

Query: 63  -------GIGRVVRIKVVMSWKELERILKDGENDCGSFEKLIGELMVKGRTRMVVSDAGV 120
                  G G V+RIKVVMS KEL+++LKD EN+  + E+LI EL VKGRT   +SD  +
Sbjct: 64  EEEEKNSGDGGVLRIKVVMSQKELKQMLKDRENNSCTLEELITELKVKGRT--TISDGRI 123

BLAST of Sed0017490 vs. NCBI nr
Match: XP_022140639.1 (uncharacterized protein LOC111011249 [Momordica charantia])

HSP 1 Score: 89.0 bits (219), Expect = 3.1e-14
Identity = 65/151 (43.05%), Postives = 84/151 (55.63%), Query Frame = 0

Query: 1   MGNCLRSNKVTAYSPA----------EQAKKVERIVPATGSAIG---------------- 60
           MGNCLR+N+V A   A          E   KVE   PA GSA+                 
Sbjct: 43  MGNCLRNNRVMAQDEACSPSPNSSLTETNYKVED-KPAAGSALARPKTEEARIAARRKKV 102

Query: 61  ---EKREASGSDGGAGIGRVVRIKVVMSWKELERILKDGENDCGSFEKLIGELMVKGRTR 120
              ++RE   S GG G   V+RIKVV+S KEL++ILKD E++  + E+L+ EL +KGRT 
Sbjct: 103 VRFQQREDEISGGGGG---VLRIKVVVSQKELKQILKDRESNSSTLEELLAELKMKGRT- 162

Query: 121 MVVSDAGVEEAVEDENGRWSPALESIPEHIN 123
             +SDA  +   EDENG W PALESIPE ++
Sbjct: 163 --ISDARADNE-EDENGSWRPALESIPEDLH 185

BLAST of Sed0017490 vs. NCBI nr
Match: KAG6570883.1 (hypothetical protein SDJN03_29798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-13
Identity = 69/156 (44.23%), Postives = 83/156 (53.21%), Query Frame = 0

Query: 1   MGN-CLRSNKVTAY---------SPAEQAKKVERIVPATGSAIG---------------- 60
           MGN C +SNKV A          SP  +AKKVE   P  GSA+                 
Sbjct: 1   MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVEE-KPVAGSAMAKPKTAEERSGAAAGKK 60

Query: 61  -------EKREASGSDGGAG-IGRVVRIKVVMSWKELERILKDGENDCGSFEKLIGELMV 120
                  E+ E SG  GG G    V+RIKVVMS +EL++ILK+ EN   S E+LI E  V
Sbjct: 61  VVRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKENENSSRSLEELIAEFKV 120

Query: 121 KGRTRMVVSDAGVEEAVEDENGRWSPALESIPEHIN 123
           KGRT   VSDA + + VEDENG   PALE IPE ++
Sbjct: 121 KGRT--TVSDA-ITDEVEDENGSRRPALECIPEGLH 152

BLAST of Sed0017490 vs. NCBI nr
Match: TYK24218.1 (hypothetical protein E5676_scaffold27G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 5.2e-09
Identity = 61/154 (39.61%), Postives = 73/154 (47.40%), Query Frame = 0

Query: 1   MGN-CLRSNKVTAYS------PAEQ---AKKVERIVPATGSAIGEKREA----------- 60
           MGN C R+NKV A        P +Q   A+KVE      GSA+ + +             
Sbjct: 1   MGNICFRTNKVMAQDDSYDNLPPDQFIEAEKVEEQPLRPGSAMAKPKNGTGGAAGKKVVR 60

Query: 61  --------------SGSDGGAGIGRVVRIKVVMSWKELERILKDGENDCGSFEKLIGELM 120
                         SG D GAG   V+RIKVV+S KEL+ ILK+ EN+  S E+LI EL 
Sbjct: 61  FNLQEEEEDQEDRNSGDDSGAG---VLRIKVVISQKELKEILKNRENNSCSLEELIEELK 120

BLAST of Sed0017490 vs. NCBI nr
Match: KGN63254.1 (hypothetical protein Csa_022493 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 4.4e-08
Identity = 43/85 (50.59%), Postives = 52/85 (61.18%), Query Frame = 0

Query: 35  EKREASGSDGGAGIGRVVRIKVVMSWKELERILKDGENDCGSFEKLIGELMVKGRTRMVV 94
           EK E   + G +G G V+RIKVV+S KEL++ILK  EN+  S E+LI EL VKGR   V 
Sbjct: 66  EKDEEGRNSGDSGPG-VLRIKVVISQKELKQILKSRENNSCSLEELIEELKVKGRATTVS 125

Query: 95  SDAGVEEAVEDENGRWSPALESIPE 120
           +         DE G W PALE IPE
Sbjct: 126 A---------DETGSWKPALECIPE 140

BLAST of Sed0017490 vs. ExPASy TrEMBL
Match: A0A6J1CG85 (uncharacterized protein LOC111011249 OS=Momordica charantia OX=3673 GN=LOC111011249 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.5e-14
Identity = 65/151 (43.05%), Postives = 84/151 (55.63%), Query Frame = 0

Query: 1   MGNCLRSNKVTAYSPA----------EQAKKVERIVPATGSAIG---------------- 60
           MGNCLR+N+V A   A          E   KVE   PA GSA+                 
Sbjct: 43  MGNCLRNNRVMAQDEACSPSPNSSLTETNYKVED-KPAAGSALARPKTEEARIAARRKKV 102

Query: 61  ---EKREASGSDGGAGIGRVVRIKVVMSWKELERILKDGENDCGSFEKLIGELMVKGRTR 120
              ++RE   S GG G   V+RIKVV+S KEL++ILKD E++  + E+L+ EL +KGRT 
Sbjct: 103 VRFQQREDEISGGGGG---VLRIKVVVSQKELKQILKDRESNSSTLEELLAELKMKGRT- 162

Query: 121 MVVSDAGVEEAVEDENGRWSPALESIPEHIN 123
             +SDA  +   EDENG W PALESIPE ++
Sbjct: 163 --ISDARADNE-EDENGSWRPALESIPEDLH 185

BLAST of Sed0017490 vs. ExPASy TrEMBL
Match: A0A5D3DKZ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00200 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-09
Identity = 61/154 (39.61%), Postives = 73/154 (47.40%), Query Frame = 0

Query: 1   MGN-CLRSNKVTAYS------PAEQ---AKKVERIVPATGSAIGEKREA----------- 60
           MGN C R+NKV A        P +Q   A+KVE      GSA+ + +             
Sbjct: 1   MGNICFRTNKVMAQDDSYDNLPPDQFIEAEKVEEQPLRPGSAMAKPKNGTGGAAGKKVVR 60

Query: 61  --------------SGSDGGAGIGRVVRIKVVMSWKELERILKDGENDCGSFEKLIGELM 120
                         SG D GAG   V+RIKVV+S KEL+ ILK+ EN+  S E+LI EL 
Sbjct: 61  FNLQEEEEDQEDRNSGDDSGAG---VLRIKVVISQKELKEILKNRENNSCSLEELIEELK 120

BLAST of Sed0017490 vs. ExPASy TrEMBL
Match: A0A0A0LQE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418890 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-08
Identity = 43/85 (50.59%), Postives = 52/85 (61.18%), Query Frame = 0

Query: 35  EKREASGSDGGAGIGRVVRIKVVMSWKELERILKDGENDCGSFEKLIGELMVKGRTRMVV 94
           EK E   + G +G G V+RIKVV+S KEL++ILK  EN+  S E+LI EL VKGR   V 
Sbjct: 66  EKDEEGRNSGDSGPG-VLRIKVVISQKELKQILKSRENNSCSLEELIEELKVKGRATTVS 125

Query: 95  SDAGVEEAVEDENGRWSPALESIPE 120
           +         DE G W PALE IPE
Sbjct: 126 A---------DETGSWKPALECIPE 140

BLAST of Sed0017490 vs. ExPASy TrEMBL
Match: A0A5B7A6T3 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_020796 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 9.9e-06
Identity = 44/143 (30.77%), Postives = 74/143 (51.75%), Query Frame = 0

Query: 1   MGNCLRSNKVTAYS----PAEQAKKVERIVPATGSAIGEKREASGSDGGA---------G 60
           MGNC+ +N +   +    P  +A+ ++     T S +G  R A+G              G
Sbjct: 33  MGNCITTNIIVDQNEKEEPRREAESIKETRSVTSSELGSARPANGGKKKMVRFKLCKEDG 92

Query: 61  IGR---------VVRIKVVMSWKELERILKDGENDCGSFEKLIGELMVKGR--TRMVVSD 120
           +GR         VVRI+VV++ +EL +IL + E++  S E+L+  + ++ R  +++ ++D
Sbjct: 93  VGRESHGDSKSGVVRIRVVVTRRELNQIL-NNESNYSSVEQLLSAMKLRSRKVSQVRIND 152

BLAST of Sed0017490 vs. ExPASy TrEMBL
Match: A0A4V3WQ11 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_029836 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.9e-05
Identity = 43/139 (30.94%), Postives = 66/139 (47.48%), Query Frame = 0

Query: 1   MGNCLRSNKVTAYSPAEQAKKVERIVPATGSAIG--------------EKREASGSDG-- 60
           MGNC+ SNK+      ++  + ER +  +   +               E+ E    DG  
Sbjct: 1   MGNCVTSNKILGQDEKDEQPREERAIERSVRHVDGGKKKSVRFKLHEEEEEEEEEEDGNG 60

Query: 61  ----GAGIGRVVRIKVVMSWKELERILKDGENDCGSFEKLIGELMVKGRTRMVVSDAGVE 120
               G   G  VRI+VV++ +EL RIL + ++   S E+++GE+ +K R    +  +   
Sbjct: 61  EERQGCSKGGAVRIRVVVTQRELIRIL-NTKSKYSSVEQMLGEMKLKSRKISQIRSSD-- 120

BLAST of Sed0017490 vs. TAIR 10
Match: AT3G21680.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-06
Identity = 42/122 (34.43%), Postives = 60/122 (49.18%), Query Frame = 0

Query: 1   MGNCLRSNKVTAYSPAEQAKK---VERIVPATGSAIGEKREASGSDGGAGIGRVVRIKVV 60
           MGNCLR +   A    +       V+ +     S  GE+     ++  +   +VVRIKVV
Sbjct: 1   MGNCLRHDNGVARKEKDDLDPEPLVKLLEEGKTSFRGEEESERSTEEES---KVVRIKVV 60

Query: 61  MSWKELERILKDGENDCGSFEKLIGELMVKGRTRMVVSDAGVEEAVEDENGRWSPALESI 120
           ++ KEL +IL   +N   S ++L+  L   GR   + S    E+   DEN  W P LESI
Sbjct: 61  VTKKELRQIL-GHKNGINSIQQLVHVLKDSGRNISMASYEEDEKEEGDEN--WRPTLESI 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038902397.11.2e-1647.14uncharacterized protein LOC120089037 [Benincasa hispida][more]
XP_022140639.13.1e-1443.05uncharacterized protein LOC111011249 [Momordica charantia][more]
KAG6570883.12.0e-1344.23hypothetical protein SDJN03_29798, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK24218.15.2e-0939.61hypothetical protein E5676_scaffold27G00200 [Cucumis melo var. makuwa][more]
KGN63254.14.4e-0850.59hypothetical protein Csa_022493 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CG851.5e-1443.05uncharacterized protein LOC111011249 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A5D3DKZ82.5e-0939.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LQE92.1e-0850.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418890 PE=4 SV=1[more]
A0A5B7A6T39.9e-0630.77Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_020796 PE=4 SV=1[more]
A0A4V3WQ112.9e-0530.94Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0298... [more]
Match NameE-valueIdentityDescription
AT3G21680.12.0e-0634.43unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..122
NoneNo IPR availablePANTHERPTHR33148:SF55OS01G0219300 PROTEINcoord: 1..119
NoneNo IPR availablePANTHERPTHR33148PLASTID MOVEMENT IMPAIRED PROTEIN-RELATEDcoord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0017490.1Sed0017490.1mRNA