Sed0017227 (gene) Chayote v1

Overview


Name	Sed0017227
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-H2 finger protein ATL43
Location	LG08: 2704948 .. 2705923 (+)
RNA-Seq Expression	Sed0017227
Synteny	Sed0017227

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCCTTCCCAATTCCTTCTTCTCCTCTCTGTTTTTCCTCTTCACGGTCGTCTCTCCGGTCGCCGCCGCCGCCGTCGACGACCAACCTCTAAACCCTCTCCTCCACCCATTTCCTCATCGCTTCAAACCCATACAGCAAACCCATTTCGTTGCTGCTCCATCTCCGCCGCCGCCGGAGCTGAAACCCATCTACTCTCCATTCCGGCCGAGCACGGCGGTGGTGGCCGTAGTTCTGACCACCGCTTTCTCCATCACCTTCCTTCTCCTCCTCTACGCCAAGCACTGCAACCGTGGAAATGCATTGATTGCCGGATTCTCGAGAAACCCCAATCCGATGACCGGCGTTCCGAGCTTCACAGCCGGGAAGAACTCCGGCATCGACCAATCCGTAATCGAATCGCTGCCGATCTTCCGATTCGGGTCGTTGATCGGGCAGAGGGAAGGGCAGGAATGCGCCGTTTGCCTCAACAAATTCGAGCAAATAGAGATTCTAAGACGTCTTCCATGTCGAATGTGTCGATACTTGGCTCGACGCCTACTCCACTTGCCCTCTCTGCCGATTCAGAATCGACCCAGAAGACGTTTTGTTAGTAGACGCCAATGTCAATGTGTTTCTCAACAATGTGGCGTTGAATTTAGAACAGGGGAGATCTGGGTCTGGCAGAGTCTCCGCCGGAGAGAACCGTGCCGGCGGCGAGTCCAGTCTCTGGGATCCGGAATTGTTGAGACGAGGCGAAACGGTGGCTTTCGGAGGCTTCAATCGGCACCGGAAAGATGGGCTACTATTGCCGGAGGGGAAAATGAATCGGAATCGGAATGGATCCAGATTTGAGCACCGGATCATGGAATGGCCGGCGGCGGCGGTGGTGGTGCAGGGGAGGCAGAGATGGAGCGATGTACAACCGTCGGATCTGGTGTATCTACGGTCAGAAATGATCATGCCTGTAGCTTCATTACCACCGTGGAAGTAG

mRNA sequence

ATGGCCGCCCTTCCCAATTCCTTCTTCTCCTCTCTGTTTTTCCTCTTCACGGTCGTCTCTCCGGTCGCCGCCGCCGCCGTCGACGACCAACCTCTAAACCCTCTCCTCCACCCATTTCCTCATCGCTTCAAACCCATACAGCAAACCCATTTCGTTGCTGCTCCATCTCCGCCGCCGCCGGAGCTGAAACCCATCTACTCTCCATTCCGGCCGAGCACGGCGGTGGTGGCCGTAGTTCTGACCACCGCTTTCTCCATCACCTTCCTTCTCCTCCTCTACGCCAAGCACTGCAACCGTGGAAATGCATTGATTGCCGGATTCTCGAGAAACCCCAATCCGATGACCGGCGTTCCGAGCTTCACAGCCGGGAAGAACTCCGGCATCGACCAATCCGTAATCGAATCGCTGCCGATCTTCCGATTCGGGTCGTTGATCGGGCAGAGGGAAGGGCAGGAATGCGCCGTTTGCCTCAACAAATTCGAGCAAATAGAGATTCTAAGACGTCTTCCATGTCGAATAATCGACCCAGAAGACGTTTTGTTAGTAGACGCCAATGTCAATGTGTTTCTCAACAATGTGGCGTTGAATTTAGAACAGGGGAGATCTGGGTCTGGCAGAGTCTCCGCCGGAGAGAACCGTGCCGGCGGCGAGTCCAGTCTCTGGGATCCGGAATTGTTGAGACGAGGCGAAACGGTGGCTTTCGGAGGCTTCAATCGGCACCGGAAAGATGGGCTACTATTGCCGGAGGGGAAAATGAATCGGAATCGGAATGGATCCAGATTTGAGCACCGGATCATGGAATGGCCGGCGGCGGCGGTGGTGGTGCAGGGGAGGCAGAGATGGAGCGATGTACAACCGTCGGATCTGGTGTATCTACGGTCAGAAATGATCATGCCTGTAGCTTCATTACCACCGTGGAAGTAG

Coding sequence (CDS)

ATGGCCGCCCTTCCCAATTCCTTCTTCTCCTCTCTGTTTTTCCTCTTCACGGTCGTCTCTCCGGTCGCCGCCGCCGCCGTCGACGACCAACCTCTAAACCCTCTCCTCCACCCATTTCCTCATCGCTTCAAACCCATACAGCAAACCCATTTCGTTGCTGCTCCATCTCCGCCGCCGCCGGAGCTGAAACCCATCTACTCTCCATTCCGGCCGAGCACGGCGGTGGTGGCCGTAGTTCTGACCACCGCTTTCTCCATCACCTTCCTTCTCCTCCTCTACGCCAAGCACTGCAACCGTGGAAATGCATTGATTGCCGGATTCTCGAGAAACCCCAATCCGATGACCGGCGTTCCGAGCTTCACAGCCGGGAAGAACTCCGGCATCGACCAATCCGTAATCGAATCGCTGCCGATCTTCCGATTCGGGTCGTTGATCGGGCAGAGGGAAGGGCAGGAATGCGCCGTTTGCCTCAACAAATTCGAGCAAATAGAGATTCTAAGACGTCTTCCATGTCGAATAATCGACCCAGAAGACGTTTTGTTAGTAGACGCCAATGTCAATGTGTTTCTCAACAATGTGGCGTTGAATTTAGAACAGGGGAGATCTGGGTCTGGCAGAGTCTCCGCCGGAGAGAACCGTGCCGGCGGCGAGTCCAGTCTCTGGGATCCGGAATTGTTGAGACGAGGCGAAACGGTGGCTTTCGGAGGCTTCAATCGGCACCGGAAAGATGGGCTACTATTGCCGGAGGGGAAAATGAATCGGAATCGGAATGGATCCAGATTTGAGCACCGGATCATGGAATGGCCGGCGGCGGCGGTGGTGGTGCAGGGGAGGCAGAGATGGAGCGATGTACAACCGTCGGATCTGGTGTATCTACGGTCAGAAATGATCATGCCTGTAGCTTCATTACCACCGTGGAAGTAG

Protein sequence

MAALPNSFFSSLFFLFTVVSPVAAAAVDDQPLNPLLHPFPHRFKPIQQTHFVAAPSPPPPELKPIYSPFRPSTAVVAVVLTTAFSITFLLLLYAKHCNRGNALIAGFSRNPNPMTGVPSFTAGKNSGIDQSVIESLPIFRFGSLIGQREGQECAVCLNKFEQIEILRRLPCRIIDPEDVLLVDANVNVFLNNVALNLEQGRSGSGRVSAGENRAGGESSLWDPELLRRGETVAFGGFNRHRKDGLLLPEGKMNRNRNGSRFEHRIMEWPAAAVVVQGRQRWSDVQPSDLVYLRSEMIMPVASLPPWK

Homology

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BLAST of Sed0017227 vs. NCBI nr
Match: XP_023531143.1 (RING-H2 finger protein ATL43 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 351.7 bits (901), Expect = 6.5e-93
Identity = 219/378 (57.94%), Postives = 246/378 (65.08%), Query Frame = 0


Query: 1   MAALPNSFFSSLFFLFTVVSPVAAAAVDDQPLNPLL-HPFPHRFKPIQQTHFVAAPSPPP 60
           M  LP+SF  SL FLFTVVSP AAA   D  LN LL HP  +RFK IQ+T F A+PSPPP
Sbjct: 1   MGTLPDSFLFSLIFLFTVVSPAAAALPGDPSLNLLLPHPILYRFKAIQETVFDASPSPPP 60

Query: 61  PEL--------KPIYSPFRPSTAVVAVVLTTAFSITFLLLLYAKHCNRGNALIAGFSRNP 120
           P L        KP+YSPFRPS AVV  VLTT FSITFLLLLYAKHC RGNA++ G+SR P
Sbjct: 61  PPLPSPPPPEDKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSRYP 120

Query: 121 NPMTGVPSFTAGKNSGIDQSVIESLPIFRFGSLIGQREGQECAVCLNKFEQIEILRRLP- 180
           N + G PSFT  KNSGIDQ+VIESLPIFRFGSL GQ+EG ECAVCL+KFEQ EILR LP 
Sbjct: 121 NSVMGAPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLDKFEQTEILRLLPK 180

Query: 181 ----------------------CRI-IDPEDVLLVDANVNVFLNN--------------- 240
                                 CR  +DPEDVLL++ +VN+FL N               
Sbjct: 181 CKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLIE-DVNIFLYNPAPAPPPLPPPRDSN 240

Query: 241 ---VALNLEQGR----SGSGRVSAGENRAG----GESSLWDPELLR------RGETVAFG 300
              V LNLEQGR    +GSGRVS   +  G    GESS  DP LLR      R ETVA G
Sbjct: 241 SKDVVLNLEQGRKSGKAGSGRVSGRHSSVGEKRTGESSRRDPALLRRSLDSKRSETVAIG 300

Query: 301 GFNRHRKDGLLLPEGK--MNRNRNGSRFEHRIMEWPAAAVVVQGRQRWSDVQPSDLVYLR 306
            F+RHRKDGLLLP+ K   N+N+N SRFEHRI+  P A VVVQG+QRWSDV  SDL+YLR
Sbjct: 301 CFDRHRKDGLLLPDEKTNQNQNQNQSRFEHRIIVSPRAPVVVQGQQRWSDVHASDLLYLR 360

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BLAST of Sed0017227 vs. NCBI nr
Match: KAG7021678.1 (RING-H2 finger protein ATL43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 350.9 bits (899), Expect = 1.1e-92
Identity = 220/379 (58.05%), Postives = 248/379 (65.44%), Query Frame = 0


Query: 1   MAALPNSFFSSLFFLFTVVSPVAAAAVDDQP-LNPLL-HPFPHRFKPIQQTHFVAAPSPP 60
           M  LP+SF  SL FLFTVVSP AAAA+   P LN LL HP  +RFK IQ+T F A+PSPP
Sbjct: 1   MGTLPDSFLFSLIFLFTVVSPAAAAALPGDPSLNLLLPHPILYRFKAIQETVFDASPSPP 60

Query: 61  PPEL--------KPIYSPFRPSTAVVAVVLTTAFSITFLLLLYAKHCNRGNALIAGFSRN 120
           PP L        KP+YSPFRPS AVV  VLTT FSITFLLLLYAKHC RGNA++ G+SR 
Sbjct: 61  PPPLPSPPPPEDKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSRY 120

Query: 121 PNPMTGVPSFTAGKNSGIDQSVIESLPIFRFGSLIGQREGQECAVCLNKFEQIEILRRLP 180
           PN + G PSFT  KNSGIDQ+VIESLPIFRFGSL GQ+EG ECAVCL+KFEQ EILR LP
Sbjct: 121 PNSVIGAPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLDKFEQTEILRLLP 180

Query: 181 -----------------------CRI-IDPEDVLLVDANVNVFLNN-------------- 240
                                  CR  +DPEDVLL++ +VN+FL N              
Sbjct: 181 KCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLIE-DVNIFLYNPAPAPPPMPPPRDS 240

Query: 241 ----VALNLEQGR----SGSGRVSAGENRAG----GESSLWDPELLRR------GETVAF 300
               V LNLEQGR    +GSGRVS   +  G    GESS  DP LLRR       ETVA 
Sbjct: 241 NSKDVVLNLEQGRKSGKAGSGRVSGRHSSVGEKRTGESSRRDPALLRRSLDSKSSETVAI 300

Query: 301 GGFNRHRKDGLLLPEGK--MNRNRNGSRFEHRIMEWPAAAVVVQGRQRWSDVQPSDLVYL 306
           G F+RHRKDGLLLP+ K   N+N+N SRFEHRI+  P A VVVQG+QRWSDV  SDL+YL
Sbjct: 301 GCFDRHRKDGLLLPDEKTNQNQNQNQSRFEHRIIVSPRAPVVVQGQQRWSDVHASDLLYL 360

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BLAST of Sed0017227 vs. NCBI nr
Match: XP_022931371.1 (RING-H2 finger protein ATL43 [Cucurbita moschata] >XP_022931379.1 RING-H2 finger protein ATL43 [Cucurbita moschata])

HSP 1 Score: 349.7 bits (896), Expect = 2.5e-92
Identity = 218/376 (57.98%), Postives = 245/376 (65.16%), Query Frame = 0


Query: 1   MAALPNSFFSSLFFLFTVVSPVAAAAVDDQPLNPLL-HPFPHRFKPIQQTHFVAAPSPPP 60
           M  LP+SF  SL FLFTVVSP AAA   D  LN LL HP  +RFK IQ+T F A+PSPPP
Sbjct: 1   MGTLPDSFLFSLIFLFTVVSPAAAALPGDPSLNLLLPHPILYRFKAIQETVFDASPSPPP 60

Query: 61  PEL--------KPIYSPFRPSTAVVAVVLTTAFSITFLLLLYAKHCNRGNALIAGFSRNP 120
           P L        KP+YSPFRPS AVV  VLTT FSITFLLLLYAKHC RGNA++ G+SR P
Sbjct: 61  PPLPSPPPPEDKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSRYP 120

Query: 121 NPMTGVPSFTAGKNSGIDQSVIESLPIFRFGSLIGQREGQECAVCLNKFEQIEILRRLP- 180
           N + G PSFT  KNSGIDQ+VIESLPIFRFGSL GQ+EG ECAVCL+KFEQ EILR LP 
Sbjct: 121 NSVIGAPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLDKFEQTEILRLLPK 180

Query: 181 ----------------------CRI-IDPEDVLLVDANVNVFLNN--------------- 240
                                 CR  +DPEDVLL++ +VN+FL N               
Sbjct: 181 CKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLIE-DVNIFLYNPAPAPPPLPPPRDSN 240

Query: 241 ---VALNLEQGR----SGSGRVSAGENRAG----GESSLWDPELLRR------GETVAFG 300
              V LNLEQGR    +GSGRVS   +  G    GESS  DP LLRR       ETVA G
Sbjct: 241 SKDVVLNLEQGRKSGKAGSGRVSGRHSSVGEKRTGESSRRDPALLRRSLDSKSSETVAIG 300

Query: 301 GFNRHRKDGLLLPEGKMNRNRNGSRFEHRIMEWPAAAVVVQGRQRWSDVQPSDLVYLRSE 306
            F+RHRKDGLLLP+ K N+N+  SRFEHRI+  P A VVVQG+QRWSDV  SDL+YLRSE
Sbjct: 301 CFDRHRKDGLLLPDEKTNQNQ--SRFEHRIIVSPRAPVVVQGQQRWSDVHASDLLYLRSE 360

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BLAST of Sed0017227 vs. NCBI nr
Match: XP_038879064.1 (RING-H2 finger protein ATL43 [Benincasa hispida])

HSP 1 Score: 347.4 bits (890), Expect = 1.2e-91
Identity = 215/373 (57.64%), Postives = 246/373 (65.95%), Query Frame = 0


Query: 1   MAALPNSF-FSSLFFLFTVVSPVAAAAVDDQPLNPLL-HPFPHRFKPIQQTHFVAAPSP- 60
           M ALPNSF   SL FLFT VSP AAA     PLN +L HPF +RFK +++T FVA+PSP 
Sbjct: 1   MGALPNSFSLFSLIFLFTAVSP-AAATAGGPPLNLILPHPFLYRFKSLKETLFVASPSPP 60

Query: 61  --------PPPELKPIYSPFRPSTAVVAVVLTTAFSITFLLLLYAKHCNRGNALIAGFSR 120
                   PPPE KP+YSPFRPS AVV  VLTT FSITFLLLLYAKHC RGNA++ G+S 
Sbjct: 61  PPPSFPSAPPPEEKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVIGYSM 120

Query: 121 NPNPMTGVPSFTAGKNSGIDQSVIESLPIFRFGSLIGQREGQECAVCLNKFEQIEILRRL 180
            PN M GVPSF+  KNSGIDQ+VIESLPIFRFGSL GQ+EG ECAVCLN+FE  E+LR L
Sbjct: 121 RPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPAEVLRLL 180

Query: 181 P-----------------------CRI-IDPEDVLLVDANVNVFLNN------------- 240
           P                       CR  +DPEDVLLV+ +VN+FL+N             
Sbjct: 181 PKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVE-DVNIFLHNPPPLPPRESNSKD 240

Query: 241 VALNLEQGR----SGSGRVSAGENRAG----GESSLWDPELLRRG------ETVAFGGFN 300
           V LNLEQGR    +GSGRVS   +  G    GESS  DP LLRR       ETVA G F+
Sbjct: 241 VVLNLEQGRRSSKAGSGRVSGRHSSVGEKRTGESSYRDPALLRRSLDSKRTETVAVGCFD 300

Query: 301 RHRKDGLLLPEGKMNRNRNGSRFEHRIMEWPAAAVVVQGRQRWSDVQPSDLVYLRSEMIM 306
           RHRKDGLLLPE K N+N+N +R EHRI+  P   V+VQG+Q WSDVQ SDL+YLRSEMI+
Sbjct: 301 RHRKDGLLLPEEKTNQNQNQNRLEHRIIVSPRVPVMVQGQQTWSDVQASDLLYLRSEMII 360

[Close]

BLAST of Sed0017227 vs. NCBI nr
Match: XP_022973977.1 (RING-H2 finger protein ATL43 [Cucurbita maxima])

HSP 1 Score: 346.7 bits (888), Expect = 2.1e-91
Identity = 217/377 (57.56%), Postives = 245/377 (64.99%), Query Frame = 0


Query: 1   MAALPNSFFSSLFFLFTVVSPVAAAAV--DDQPLNPLL-HPFPHRFKPIQQTHFVAAPSP 60
           M  LP+SF  SL FLFTVVSP AAAA    D  L+ LL HP  +RFK IQ+T F A+PSP
Sbjct: 1   MGTLPDSFLFSLIFLFTVVSPAAAAAALPGDPSLHLLLPHPILYRFKAIQETVFDASPSP 60

Query: 61  PPPEL--------KPIYSPFRPSTAVVAVVLTTAFSITFLLLLYAKHCNRGNALIAGFSR 120
           PPP L        KP+YS FRPS AVV  VLTT FSITFLLLLYAKHC RGNA++ G+SR
Sbjct: 61  PPPPLPSPPPPEDKPVYSTFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSR 120

Query: 121 NPNPMTGVPSFTAGKNSGIDQSVIESLPIFRFGSLIGQREGQECAVCLNKFEQIEILRRL 180
            PN + G PSFT  KNSGIDQ+VIESLPIFRFGSL GQ+EG ECAVCL+KFEQ EILR L
Sbjct: 121 YPNSVMGAPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLDKFEQTEILRLL 180

Query: 181 P-----------------------CRI-IDPEDVLLVDANVNVFLNN------------- 240
           P                       CR  +DPEDVLL++ +VN+FL N             
Sbjct: 181 PKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLIE-DVNIFLYNPAPAPPPLPPPRD 240

Query: 241 -----VALNLEQGR----SGSGRVSAGENRAG----GESSLWDPELLR------RGETVA 300
                V LNLEQGR    +GSGRVS   +  G    GESS  DP LLR      R ETVA
Sbjct: 241 SNSKDVVLNLEQGRKSGKAGSGRVSGRHSSVGEKRTGESSRRDPALLRRSLDSKRSETVA 300

Query: 301 FGGFNRHRKDGLLLPEGKMNRNRNGSRFEHRIMEWPAAAVVVQGRQRWSDVQPSDLVYLR 305
            G F+RHRKDGLLLP+ K N+N+N SRFEHRI+  P A VVVQG+QRWSDV  SDL+YLR
Sbjct: 301 IGCFDRHRKDGLLLPDEKTNQNQNQSRFEHRIIVSPRAPVVVQGQQRWSDVHASDLLYLR 360

[Close]

BLAST of Sed0017227 vs. ExPASy Swiss-Prot
Match: Q5EAE9 (RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 1.5e-31
Identity = 122/319 (38.24%), Postives = 149/319 (46.71%), Query Frame = 0


Query: 55  PSPPPPELKPIYSPFRPSTAVVAVVLTTAFSITFLLLLYAKHCNRGNALIAGFSRNPNPM 114
           P P PP      S   P  AVV  VLT  FS+TFLLLLY KHC R N  +  +  +P   
Sbjct: 40  PPPSPPPRHNFTSSLMPGIAVVIAVLTAFFSLTFLLLLYVKHCKRRNGSV--YVNHPQRF 99

Query: 115 T----GVPSFTAG------KNSGIDQSVIESLPIFRFGSLIGQREGQECAVCLNKFEQIE 174
                G   +  G      KNSGID+SVIESLP+FRFG+L G ++G ECAVCL +FE  E
Sbjct: 100 AITRYGGGYYNGGGVVGGRKNSGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTE 159

Query: 175 ILRRLP-----------------------CRI-IDPEDVLLV-DANVNVFL------NNV 234
           +LR LP                       CR  +DPED+LL+ D N    L      +N 
Sbjct: 160 VLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLIGDCNSWFELQFSKDESNS 219

Query: 235 ALNLEQGRSG-------SGRVSAGENRAG-------GESSLWDPELLRR----------- 294
             N   G +        SGR S+   RA          S   +P   RR           
Sbjct: 220 VNNNPPGLTRFIPVSRISGRHSSAGERASRLNEIRTSSSYKSNPMSFRRSLDSSLKVNDA 279

Query: 295 ----GETVAFGGFNR-HRKDGLLLPEGKMNRNRNGSRFEHRIMEWPAAAVVVQG----RQ 299
                E+VA    +R  RKDGLLL     NR     RFEHRI        ++ G     Q
Sbjct: 280 GEEKSESVAVNCLDRLQRKDGLLLIP---NRESFEGRFEHRI--------IISGGNRDDQ 339

[Close]

BLAST of Sed0017227 vs. ExPASy Swiss-Prot
Match: Q9SL78 (Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-21
Identity = 92/282 (32.62%), Postives = 133/282 (47.16%), Query Frame = 0


Query: 51  FVAAPSPPPPELKPIYSPFRPSTAVVAVVLTTAFSITFLLLLYAK--HCNRGNALIAGFS 110
           +V+A SPPPP L      F+PS A++  V +  F++TF+LL+YAK  H +  +   +   
Sbjct: 19  YVSAQSPPPPNLYATSDLFKPSLAIITGVFSIVFTLTFVLLVYAKCFHNDLRSETDSDGE 78

Query: 111 RNPNPMTGVPSFT-AGKNSGIDQSVIESLPIFRFGSLIGQREGQECAVCLNKFEQIEILR 170
           R  +       F  + + SG+D+  IESLP FRF +L G ++G EC+VCL+KFE +EILR
Sbjct: 79  RIRHDRLWQGLFNRSSRFSGLDKKAIESLPFFRFSALKGLKQGLECSVCLSKFEDVEILR 138

Query: 171 RLP-----------------------CR-IIDPEDVLLVDANVNVFLNNVALNLEQGRSG 230
            LP                       CR  ++ ED L V  N +  L    LN  + R  
Sbjct: 139 LLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLSVLGNSSTSLR--ILNQSETREE 198

Query: 231 SGRVSAGENRAGGESSLWDPELLRRGETVAFGGFNRHRKDGLLLP-EGKMN--RNRNGSR 290
             R+     R  G +            +  F  F +  K  LLL  EG  N    +   +
Sbjct: 199 DSRLEIYIEREEGTND----------GSSRFSSFRKILKKSLLLEREGNENIDEKKLMHK 258

Query: 291 FEHRIMEWPAAAVVVQGRQRWSDVQPSDLVYLRSEMIMPVAS 303
           F HRI+   A       + RWS++  SDL +L SEM+  V+S
Sbjct: 259 FNHRIVVSDAVF-----KNRWSNITSSDLTFLTSEMLNSVSS 283

[Close]

BLAST of Sed0017227 vs. ExPASy Swiss-Prot
Match: Q5XF85 (E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 2.9e-19
Identity = 87/284 (30.63%), Postives = 140/284 (49.30%), Query Frame = 0


Query: 51  FVAAPSPPPPELKPIYSPFRPSTAVVAVVLTTAFSITFLLLLYAKHCNRGNALIAGFSRN 110
           + +A +PPP     + + F PS AVV  VL   F++TF+LL+YAK C+      +G  R 
Sbjct: 15  YASAQTPPPFRNGDLVANFEPSLAVVTGVLAIMFALTFVLLVYAKCCHIDLRSGSGDRRR 74

Query: 111 PNPMTGVPSF------TAGKNSGIDQSVIESLPIFRFGSLIGQREGQECAVCLNKFEQIE 170
            +       F      ++ + SG+D++ IESLP+FRF +L G ++G +C+VCL+KFE +E
Sbjct: 75  HDRRLRQGIFFNRSTASSDRFSGLDKTAIESLPLFRFSALKGSKQGLDCSVCLSKFESVE 134

Query: 171 ILRRLP-CR----IIDPEDVLLVDANVNVFLNNVALNLEQGRSGSGR----VSAGENRAG 230
           ILR LP CR    I   +  L   A   +  + V++  +     +G     ++  E R  
Sbjct: 135 ILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSMEEDSSVLTNGNSFRFLNQSEIRED 194

Query: 231 GESSLW-----DPELLRRGETVAFGGFN----------RHRKDGLLLPEGKMNRNRNG-- 290
               L+     + E + R E      F+             K+  LL E   +++     
Sbjct: 195 SSLELYIEREEEEERIHREELSGSSRFSIGESFRKILKLGNKEKTLLDEHVNDKDEKKLM 254

Query: 291 SRFEHRIMEWPAAAVVVQGRQRWSDVQPSDLVYLRSEMIMPVAS 303
            +F HRI+    + VV   + RWS+V  SDL++L SEM+  ++S
Sbjct: 255 HKFNHRIV---VSDVVF--KNRWSNVSSSDLMFLNSEMVNSISS 293

[Close]

BLAST of Sed0017227 vs. ExPASy Swiss-Prot
Match: Q8W571 (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3)

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-09
Identity = 40/118 (33.90%), Postives = 61/118 (51.69%), Query Frame = 0


Query: 56  SPPPPELKPIYSPFRPSTAVVAVVLTTAFSITFLLLLYAKHCNRGNALIAGFSRNPNPMT 115
           SP PP+L+  ++   PS   V  VL T F +T LL +Y +HC R N        +     
Sbjct: 32  SPSPPDLQTGHT---PSKTTVFAVLVTLFFLTGLLSVYIRHCARSNP-----DSSTRYFR 91

Query: 116 GVPSFTAGKNSGIDQSVIESLPIFRFGSLIGQREGQ---ECAVCLNKFEQIEILRRLP 171
              +  + +  G+D +V+ES P+F + S+   + G    ECA+CLN+ E  E +R LP
Sbjct: 92  NRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLP 141

[Close]

BLAST of Sed0017227 vs. ExPASy Swiss-Prot
Match: Q8RXX9 (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 4.4e-07
Identity = 41/129 (31.78%), Postives = 61/129 (47.29%), Query Frame = 0


Query: 46  IQQTHFVAAPSPPPPELKPI-YSPFRPSTAVVAVVLTTAFSITFLLLLYAKHCNRGNALI 105
           +      A+ S P P  +P  Y    P+ AV+ V+L  A        +Y +HC+      
Sbjct: 21  LSSADLAASQSQPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSIYFRHCS--GVPD 80

Query: 106 AGFSRNPNPMTGVPSFTAGKNSGIDQSVIESLPIFRFGSLIGQREGQ---ECAVCLNKFE 165
           AG S      +      A +  G+D SV+E+ P F +  +  Q+ G+   ECA+CLN+FE
Sbjct: 81  AGVSPAGGARSRATVNAAAR--GLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFE 140

Query: 166 QIEILRRLP 171
             E LR LP
Sbjct: 141 DDETLRLLP 145

[Close]

BLAST of Sed0017227 vs. ExPASy TrEMBL
Match: A0A6J1EU36 (RING-H2 finger protein ATL43 OS=Cucurbita moschata OX=3662 GN=LOC111437573 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 1.2e-92
Identity = 218/376 (57.98%), Postives = 245/376 (65.16%), Query Frame = 0


Query: 1   MAALPNSFFSSLFFLFTVVSPVAAAAVDDQPLNPLL-HPFPHRFKPIQQTHFVAAPSPPP 60
           M  LP+SF  SL FLFTVVSP AAA   D  LN LL HP  +RFK IQ+T F A+PSPPP
Sbjct: 1   MGTLPDSFLFSLIFLFTVVSPAAAALPGDPSLNLLLPHPILYRFKAIQETVFDASPSPPP 60

Query: 61  PEL--------KPIYSPFRPSTAVVAVVLTTAFSITFLLLLYAKHCNRGNALIAGFSRNP 120
           P L        KP+YSPFRPS AVV  VLTT FSITFLLLLYAKHC RGNA++ G+SR P
Sbjct: 61  PPLPSPPPPEDKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSRYP 120

Query: 121 NPMTGVPSFTAGKNSGIDQSVIESLPIFRFGSLIGQREGQECAVCLNKFEQIEILRRLP- 180
           N + G PSFT  KNSGIDQ+VIESLPIFRFGSL GQ+EG ECAVCL+KFEQ EILR LP 
Sbjct: 121 NSVIGAPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLDKFEQTEILRLLPK 180

Query: 181 ----------------------CRI-IDPEDVLLVDANVNVFLNN--------------- 240
                                 CR  +DPEDVLL++ +VN+FL N               
Sbjct: 181 CKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLIE-DVNIFLYNPAPAPPPLPPPRDSN 240

Query: 241 ---VALNLEQGR----SGSGRVSAGENRAG----GESSLWDPELLRR------GETVAFG 300
              V LNLEQGR    +GSGRVS   +  G    GESS  DP LLRR       ETVA G
Sbjct: 241 SKDVVLNLEQGRKSGKAGSGRVSGRHSSVGEKRTGESSRRDPALLRRSLDSKSSETVAIG 300

Query: 301 GFNRHRKDGLLLPEGKMNRNRNGSRFEHRIMEWPAAAVVVQGRQRWSDVQPSDLVYLRSE 306
            F+RHRKDGLLLP+ K N+N+  SRFEHRI+  P A VVVQG+QRWSDV  SDL+YLRSE
Sbjct: 301 CFDRHRKDGLLLPDEKTNQNQ--SRFEHRIIVSPRAPVVVQGQQRWSDVHASDLLYLRSE 360

[Close]

BLAST of Sed0017227 vs. ExPASy TrEMBL
Match: A0A6J1I903 (RING-H2 finger protein ATL43 OS=Cucurbita maxima OX=3661 GN=LOC111472589 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 1.0e-91
Identity = 217/377 (57.56%), Postives = 245/377 (64.99%), Query Frame = 0


Query: 1   MAALPNSFFSSLFFLFTVVSPVAAAAV--DDQPLNPLL-HPFPHRFKPIQQTHFVAAPSP 60
           M  LP+SF  SL FLFTVVSP AAAA    D  L+ LL HP  +RFK IQ+T F A+PSP
Sbjct: 1   MGTLPDSFLFSLIFLFTVVSPAAAAAALPGDPSLHLLLPHPILYRFKAIQETVFDASPSP 60

Query: 61  PPPEL--------KPIYSPFRPSTAVVAVVLTTAFSITFLLLLYAKHCNRGNALIAGFSR 120
           PPP L        KP+YS FRPS AVV  VLTT FSITFLLLLYAKHC RGNA++ G+SR
Sbjct: 61  PPPPLPSPPPPEDKPVYSTFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSR 120

Query: 121 NPNPMTGVPSFTAGKNSGIDQSVIESLPIFRFGSLIGQREGQECAVCLNKFEQIEILRRL 180
            PN + G PSFT  KNSGIDQ+VIESLPIFRFGSL GQ+EG ECAVCL+KFEQ EILR L
Sbjct: 121 YPNSVMGAPSFTTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLDKFEQTEILRLL 180

Query: 181 P-----------------------CRI-IDPEDVLLVDANVNVFLNN------------- 240
           P                       CR  +DPEDVLL++ +VN+FL N             
Sbjct: 181 PKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLIE-DVNIFLYNPAPAPPPLPPPRD 240

Query: 241 -----VALNLEQGR----SGSGRVSAGENRAG----GESSLWDPELLR------RGETVA 300
                V LNLEQGR    +GSGRVS   +  G    GESS  DP LLR      R ETVA
Sbjct: 241 SNSKDVVLNLEQGRKSGKAGSGRVSGRHSSVGEKRTGESSRRDPALLRRSLDSKRSETVA 300

Query: 301 FGGFNRHRKDGLLLPEGKMNRNRNGSRFEHRIMEWPAAAVVVQGRQRWSDVQPSDLVYLR 305
            G F+RHRKDGLLLP+ K N+N+N SRFEHRI+  P A VVVQG+QRWSDV  SDL+YLR
Sbjct: 301 IGCFDRHRKDGLLLPDEKTNQNQNQSRFEHRIIVSPRAPVVVQGQQRWSDVHASDLLYLR 360

[Close]

BLAST of Sed0017227 vs. ExPASy TrEMBL
Match: A0A0A0M016 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G433100 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 2.6e-79
Identity = 202/382 (52.88%), Postives = 235/382 (61.52%), Query Frame = 0


Query: 1   MAALPNSF-FSSLFFLFTVVSPVAAAAVDDQPLNPLLHPFPHRFKPIQQTHFVAA----- 60
           M  LPNSF   SLFFLFT VSP AA     +PLN +L        P+++T F+A+     
Sbjct: 1   MGTLPNSFSLFSLFFLFTAVSP-AAPTTYHRPLNLIL------THPLKETVFLASSSSSP 60

Query: 61  -------PSPPPPELKPIYSPFRPSTAVVAVVLTTAFSITFLLLLYAKHCNRGN-ALIAG 120
                  PS PPPE KP+YSPFRPS AVV  VLTT FSITFLLLLYAKHC RGN A++ G
Sbjct: 61  PPPPLFIPSAPPPEEKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAAVVVG 120

Query: 121 FSRNPNPMTGVPSFTAGKNSGIDQSVIESLPIFRFGSLIGQREGQECAVCLNKFEQIEIL 180
           +S  PN M GVPSF+  KNSGIDQ+VIESLPIFRFGSL GQ+EG ECAVCLN+FE  E+L
Sbjct: 121 YSMRPNTMMGVPSFSTRKNSGIDQTVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVL 180

Query: 181 RRLP-----------------------CRI-IDPEDVLLVDANVNVFLN----------- 240
           R LP                       CR  +DPEDVLLV+ +VN+FL+           
Sbjct: 181 RLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVE-DVNIFLHDQPPPPPQPPP 240

Query: 241 ---------NVALNLEQGR----SGSGRVSAGENRAG----GESSLWDPELLRRG----- 300
                    +V LNLEQGR    +GSGRVS   +  G    GESS  DP LLRR      
Sbjct: 241 PPPRESNSKDVVLNLEQGRRSGKAGSGRVSGRHSSVGEKRTGESSYRDPALLRRSLDSKR 300

Query: 301 -ETVAFGGFNRHRKDGLLLPEGKMNRNRNGSRFEHRIMEWPAAAVVVQGRQRWSDVQPSD 305
            ETV+ G F+RHRKDGLLLPE K N+N+N +R EHRI+  P   VV    +RWSDVQ SD
Sbjct: 301 TETVSVGCFDRHRKDGLLLPEEKTNQNQNQNRLEHRIIVSPKVPVV----ERWSDVQGSD 360

[Close]

BLAST of Sed0017227 vs. ExPASy TrEMBL
Match: A0A5A7UX38 (RING-H2 finger protein ATL43 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005050 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 2.4e-77
Identity = 202/384 (52.60%), Postives = 232/384 (60.42%), Query Frame = 0


Query: 1   MAALPNSF-FSSLFFLFTVVSPVAAAAVDDQPLNPLLHPFPHRFKPIQQTHFVAA----- 60
           M  LPNSF   SLFFLF  VSP AA   D + LN +L    H  K   +T F+A+     
Sbjct: 1   MGTLPNSFSLFSLFFLFIAVSP-AAPTTDLRSLNLIL---THHLK---ETVFLASSSSSS 60

Query: 61  -----------PSPPPPELKPIYSPFRPSTAVVAVVLTTAFSITFLLLLYAKHCNRGN-A 120
                      PS PPPE KP+YSPFRPS AVV  VLTT FSITFLLLLYAKHC RGN A
Sbjct: 61  SSSSPPPPPFIPSAPPPEEKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNGA 120

Query: 121 LIAGFSRNPNPMTGVPSFTAGKNSGIDQSVIESLPIFRFGSLIGQREGQECAVCLNKFEQ 180
           ++ G+S  PN   GVPSF+  KNSGIDQ+VIESLPIFRFGSL GQ+EG ECAVCLN+FE 
Sbjct: 121 VVVGYSMRPNTTMGVPSFSTRKNSGIDQTVIESLPIFRFGSLSGQKEGLECAVCLNRFEP 180

Query: 181 IEILRRLP-----------------------CRI-IDPEDVLLVDANVNVFLNN------ 240
            E+LR LP                       CR  +DPEDVLLV+ +VN+FL+N      
Sbjct: 181 TEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVE-DVNIFLHNQPPPPP 240

Query: 241 ------------VALNLEQGR----SGSGRVSAGENRAG----GESSLWDPELLRRG--- 300
                       V LNLEQGR    +GSGRVS   +  G    GESS  DP LLRR    
Sbjct: 241 PPPPPRESNSKDVVLNLEQGRRSGKAGSGRVSGRHSSVGEKRTGESSYRDPALLRRSLDS 300

Query: 301 ---ETVAFGGFNRHRKDGLLLPEGKMNRNRNGSRFEHRIMEWPAAAVVVQGRQRWSDVQP 305
              ETV+ G F+RHRKDGLLLPE K N+N+N +R EHRI+  P   VV    +RWSDVQ 
Sbjct: 301 KRTETVSVGCFDRHRKDGLLLPEEKSNQNQNQNRLEHRIIVSPRVPVV----ERWSDVQG 360

[Close]

BLAST of Sed0017227 vs. ExPASy TrEMBL
Match: A0A5D3DZ82 (RING-H2 finger protein ATL43 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G001970 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 7.8e-76
Identity = 202/387 (52.20%), Postives = 232/387 (59.95%), Query Frame = 0


Query: 1   MAALPNSF-FSSLFFLFTVVSPVAAAAVDDQPLNPLLHPFPHRFKPIQQTHFVAA----- 60
           M  LPNSF   SLFFLF  VSP AA   D + LN +L    H  K   +T F+A+     
Sbjct: 1   MGTLPNSFSLFSLFFLFIAVSP-AAPTTDLRSLNLIL---THHLK---ETVFLASSSSSS 60

Query: 61  ------------PSPPPPELKPIYSPFRPSTAVVAVVLTTAFSITFLLLLYAKHCNRGN- 120
                       PS PPPE KP+YSPFRPS AVV  VLTT FSITFLLLLYAKHC RGN 
Sbjct: 61  SSSSSPPPPPFIPSAPPPEEKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNG 120

Query: 121 ALIAGFSRNPNPMTGVPSFTAGKNSGIDQSVIESLPIFRFGSLIGQREGQECAVCLNKFE 180
           A++ G+S  PN   GVPSF+  KNSGIDQ+VIESLPIFRFGSL GQ+EG ECAVCLN+FE
Sbjct: 121 AVVVGYSMRPNTTMGVPSFSTRKNSGIDQTVIESLPIFRFGSLSGQKEGLECAVCLNRFE 180

Query: 181 QIEILRRLP-----------------------CRI-IDPEDVLLVDANVNVFLNN----- 240
             E+LR LP                       CR  +DPEDVLLV+ +VN+FL+N     
Sbjct: 181 PTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVE-DVNIFLHNQPPPP 240

Query: 241 -------------VALNLEQGR----SGSGRVSAGENRAG----GESSLWDPELLRRG-- 300
                        V LNLEQGR    +GSGRVS   +  G    GESS  DP LLRR   
Sbjct: 241 PPPPPPRESNSKDVVLNLEQGRRSGKAGSGRVSGRHSSVGEKRTGESSYRDPALLRRSLD 300

Query: 301 ----ETVAFGGFNRHRKDGLLLPEGK--MNRNRNGSRFEHRIMEWPAAAVVVQGRQRWSD 305
               ETV+ G F+RHRKDGLLLPE K   N+N+N +R EHRI+  P   VV    +RWSD
Sbjct: 301 SKRTETVSVGCFDRHRKDGLLLPEEKSNQNQNQNQNRLEHRIIVSPRVPVV----ERWSD 360

[Close]

BLAST of Sed0017227 vs. TAIR 10
Match: AT5G05810.1 (RING/U-box superfamily protein )

HSP 1 Score: 134.0 bits (336), Expect = 2.0e-31
Identity = 117/303 (38.61%), Postives = 144/303 (47.52%), Query Frame = 0


Query: 71  PSTAVVAVVLTTAFSITFLLLLYAKHCNRGNALIAGFSRNPNPMT----GVPSFTAG--- 130
           P  AVV  VLT  FS+TFLLLLY KHC R N  +  +  +P        G   +  G   
Sbjct: 2   PGIAVVIAVLTAFFSLTFLLLLYVKHCKRRNGSV--YVNHPQRFAITRYGGGYYNGGGVV 61

Query: 131 ---KNSGIDQSVIESLPIFRFGSLIGQREGQECAVCLNKFEQIEILRRLP---------- 190
              KNSGID+SVIESLP+FRFG+L G ++G ECAVCL +FE  E+LR LP          
Sbjct: 62  GGRKNSGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVEC 121

Query: 191 -------------CRI-IDPEDVLLV-DANVNVFL------NNVALNLEQGRSG------ 250
                        CR  +DPED+LL+ D N    L      +N   N   G +       
Sbjct: 122 VDTWLDAHSTCPLCRYRVDPEDILLIGDCNSWFELQFSKDESNSVNNNPPGLTRFIPVSR 181

Query: 251 -SGRVSAGENRAG-------GESSLWDPELLRR---------------GETVAFGGFNR- 299
            SGR S+   RA          S   +P   RR                E+VA    +R 
Sbjct: 182 ISGRHSSAGERASRLNEIRTSSSYKSNPMSFRRSLDSSLKVNDAGEEKSESVAVNCLDRL 241

[Close]

BLAST of Sed0017227 vs. TAIR 10
Match: AT2G20030.1 (RING/U-box superfamily protein )

HSP 1 Score: 105.1 bits (261), Expect = 9.9e-23
Identity = 92/282 (32.62%), Postives = 133/282 (47.16%), Query Frame = 0


Query: 51  FVAAPSPPPPELKPIYSPFRPSTAVVAVVLTTAFSITFLLLLYAK--HCNRGNALIAGFS 110
           +V+A SPPPP L      F+PS A++  V +  F++TF+LL+YAK  H +  +   +   
Sbjct: 19  YVSAQSPPPPNLYATSDLFKPSLAIITGVFSIVFTLTFVLLVYAKCFHNDLRSETDSDGE 78

Query: 111 RNPNPMTGVPSFT-AGKNSGIDQSVIESLPIFRFGSLIGQREGQECAVCLNKFEQIEILR 170
           R  +       F  + + SG+D+  IESLP FRF +L G ++G EC+VCL+KFE +EILR
Sbjct: 79  RIRHDRLWQGLFNRSSRFSGLDKKAIESLPFFRFSALKGLKQGLECSVCLSKFEDVEILR 138

Query: 171 RLP-----------------------CR-IIDPEDVLLVDANVNVFLNNVALNLEQGRSG 230
            LP                       CR  ++ ED L V  N +  L    LN  + R  
Sbjct: 139 LLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLSVLGNSSTSLR--ILNQSETREE 198

Query: 231 SGRVSAGENRAGGESSLWDPELLRRGETVAFGGFNRHRKDGLLLP-EGKMN--RNRNGSR 290
             R+     R  G +            +  F  F +  K  LLL  EG  N    +   +
Sbjct: 199 DSRLEIYIEREEGTND----------GSSRFSSFRKILKKSLLLEREGNENIDEKKLMHK 258

Query: 291 FEHRIMEWPAAAVVVQGRQRWSDVQPSDLVYLRSEMIMPVAS 303
           F HRI+   A       + RWS++  SDL +L SEM+  V+S
Sbjct: 259 FNHRIVVSDAVF-----KNRWSNITSSDLTFLTSEMLNSVSS 283

[Close]

BLAST of Sed0017227 vs. TAIR 10
Match: AT4G28890.1 (RING/U-box superfamily protein )

HSP 1 Score: 97.4 bits (241), Expect = 2.1e-20
Identity = 87/284 (30.63%), Postives = 140/284 (49.30%), Query Frame = 0


Query: 51  FVAAPSPPPPELKPIYSPFRPSTAVVAVVLTTAFSITFLLLLYAKHCNRGNALIAGFSRN 110
           + +A +PPP     + + F PS AVV  VL   F++TF+LL+YAK C+      +G  R 
Sbjct: 15  YASAQTPPPFRNGDLVANFEPSLAVVTGVLAIMFALTFVLLVYAKCCHIDLRSGSGDRRR 74

Query: 111 PNPMTGVPSF------TAGKNSGIDQSVIESLPIFRFGSLIGQREGQECAVCLNKFEQIE 170
            +       F      ++ + SG+D++ IESLP+FRF +L G ++G +C+VCL+KFE +E
Sbjct: 75  HDRRLRQGIFFNRSTASSDRFSGLDKTAIESLPLFRFSALKGSKQGLDCSVCLSKFESVE 134

Query: 171 ILRRLP-CR----IIDPEDVLLVDANVNVFLNNVALNLEQGRSGSGR----VSAGENRAG 230
           ILR LP CR    I   +  L   A   +  + V++  +     +G     ++  E R  
Sbjct: 135 ILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSMEEDSSVLTNGNSFRFLNQSEIRED 194

Query: 231 GESSLW-----DPELLRRGETVAFGGFN----------RHRKDGLLLPEGKMNRNRNG-- 290
               L+     + E + R E      F+             K+  LL E   +++     
Sbjct: 195 SSLELYIEREEEEERIHREELSGSSRFSIGESFRKILKLGNKEKTLLDEHVNDKDEKKLM 254

Query: 291 SRFEHRIMEWPAAAVVVQGRQRWSDVQPSDLVYLRSEMIMPVAS 303
            +F HRI+    + VV   + RWS+V  SDL++L SEM+  ++S
Sbjct: 255 HKFNHRIV---VSDVVF--KNRWSNVSSSDLMFLNSEMVNSISS 293

[Close]

BLAST of Sed0017227 vs. TAIR 10
Match: AT4G40070.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-10
Identity = 40/118 (33.90%), Postives = 61/118 (51.69%), Query Frame = 0


Query: 56  SPPPPELKPIYSPFRPSTAVVAVVLTTAFSITFLLLLYAKHCNRGNALIAGFSRNPNPMT 115
           SP PP+L+  ++   PS   V  VL T F +T LL +Y +HC R N        +     
Sbjct: 32  SPSPPDLQTGHT---PSKTTVFAVLVTLFFLTGLLSVYIRHCARSNP-----DSSTRYFR 91

Query: 116 GVPSFTAGKNSGIDQSVIESLPIFRFGSLIGQREGQ---ECAVCLNKFEQIEILRRLP 171
              +  + +  G+D +V+ES P+F + S+   + G    ECA+CLN+ E  E +R LP
Sbjct: 92  NRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLP 141

[Close]

BLAST of Sed0017227 vs. TAIR 10
Match: AT3G05200.1 (RING/U-box superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 3.1e-08
Identity = 41/129 (31.78%), Postives = 61/129 (47.29%), Query Frame = 0


Query: 46  IQQTHFVAAPSPPPPELKPI-YSPFRPSTAVVAVVLTTAFSITFLLLLYAKHCNRGNALI 105
           +      A+ S P P  +P  Y    P+ AV+ V+L  A        +Y +HC+      
Sbjct: 21  LSSADLAASQSQPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSIYFRHCS--GVPD 80

Query: 106 AGFSRNPNPMTGVPSFTAGKNSGIDQSVIESLPIFRFGSLIGQREGQ---ECAVCLNKFE 165
           AG S      +      A +  G+D SV+E+ P F +  +  Q+ G+   ECA+CLN+FE
Sbjct: 81  AGVSPAGGARSRATVNAAAR--GLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFE 140

Query: 166 QIEILRRLP 171
             E LR LP
Sbjct: 141 DDETLRLLP 145

The following BLAST results are available for this feature:

BLAST of Sed0017227 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531143.1	6.5e-93	57.94	RING-H2 finger protein ATL43 [Cucurbita pepo subsp. pepo]	[more]
KAG7021678.1	1.1e-92	58.05	RING-H2 finger protein ATL43, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022931371.1	2.5e-92	57.98	RING-H2 finger protein ATL43 [Cucurbita moschata] >XP_022931379.1 RING-H2 finger...	[more]
XP_038879064.1	1.2e-91	57.64	RING-H2 finger protein ATL43 [Benincasa hispida]	[more]
XP_022973977.1	2.1e-91	57.56	RING-H2 finger protein ATL43 [Cucurbita maxima]	[more]

BLAST of Sed0017227 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5EAE9	1.5e-31	38.24	RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2	[more]
Q9SL78	1.4e-21	32.62	Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 P...	[more]
Q5XF85	2.9e-19	30.63	E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 ...	[more]
Q8W571	2.1e-09	33.90	RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3	[more]
Q8RXX9	4.4e-07	31.78	E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV...	[more]

BLAST of Sed0017227 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EU36	1.2e-92	57.98	RING-H2 finger protein ATL43 OS=Cucurbita moschata OX=3662 GN=LOC111437573 PE=4 ...	[more]
A0A6J1I903	1.0e-91	57.56	RING-H2 finger protein ATL43 OS=Cucurbita maxima OX=3661 GN=LOC111472589 PE=4 SV...	[more]
A0A0A0M016	2.6e-79	52.88	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G433100 P...	[more]
A0A5A7UX38	2.4e-77	52.60	RING-H2 finger protein ATL43 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DZ82	7.8e-76	52.20	RING-H2 finger protein ATL43 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Sed0017227 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05810.1	2.0e-31	38.61	RING/U-box superfamily protein	[more]
AT2G20030.1	9.9e-23	32.62	RING/U-box superfamily protein	[more]
AT4G28890.1	2.1e-20	30.63	RING/U-box superfamily protein	[more]
AT4G40070.1	1.5e-10	33.90	RING/U-box superfamily protein	[more]
AT3G05200.1	3.1e-08	31.78	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 127..174 e-value: 1.5E-5 score: 26.1
None	No IPR available	PANTHER	PTHR46539	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 48..170
None	No IPR available	PANTHER	PTHR46539	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 173..298
None	No IPR available	PANTHER	PTHR46539:SF2	RING-H2 FINGER PROTEIN ATL43	coord: 173..298
None	No IPR available	PANTHER	PTHR46539:SF2	RING-H2 FINGER PROTEIN ATL43	coord: 48..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017227.1	Sed0017227.1	mRNA