Sed0017013 (gene) Chayote v1

Overview


Name	Sed0017013
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ribosome maturation factor rimM
Location	LG05: 1600117 .. 1601359 (+)
RNA-Seq Expression	Sed0017013
Synteny	Sed0017013

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGGTATTGACAAAAATATTGTGTTAATTAATTATACACCATGTTGTGTTGGTGACCAATATTAAAAGATATTAATAACTGCAAAAATTTTATCTATATTAATAATTATTTGGGAGAAAAACTCATCTAATACAATTTTTCATTTTTTTTAAATGCAGGTGAAGGGTGCAAGTGTGAATTATTAGATAATTTGGGGGTATTATTGCAATAGTAGAAGTCACGAGGGGCCAAACGGAAAACTCACACAAAAAGTTATCATCACGGTACTAACCTAGACTCTGCTTCATTCTTTACCTTTATCATTTTCTCTGTACCATGCAAAGGCAATCGCTAGGCTCCCCACCAGCCTCCAAGCTCTACGGCGGCGGCCATGGCGCCGGAGCCAACTCCGACGGAGTTCCGGCCGACAATCAAAAGCGCAACAACAAGCACTCTCCATCTTCTTCTTCATCATTCCGATTCTCATTTCCGTCGCGGCCGGAGAAATTGGTTCACGCCATCCCTATCCTCACCGTCATCTGCTTCCTCATCCTCTACGGCTTCTCGCACAGTCCTTCGCAGTCAGGTATTTTCGATTTCTCTAATCCGAATCAACAATCGCTCCTTATTTCGCAATAGTTTGATTCGATTCGATTCGATCGTCTCTGTTGATGCTCTGTTGCGATCGTTTCAGATTTGGCTCAGATTCATGGATCCAAGCTTCCTTCGGCACATTTAGGTATAATGTAGCGGAAAATTTTGCGAATCGAGGTGTTTCTGTATGATTTCTGAAATTGAATTCCTATGTATTTTGGTGATTCATAGCAGAAATCAAAGCCGATGGAGATGAACTTATCGTACCAGGCAACATTGTGGCGATTCAAAGTTTCCGTAACCTGAAAGAGATCGAGAAATCTTATACTCGTAAATCTCGATCTCCGAGGAGATTCGCCGATTTCTAAACTCCGCATTTCCGATTATCTTATCTGCCGGTAAAATCTCACCGATCTCGTTTTCACCGTACGGTTTTTTTTTTTCTGTTGATATTTTTTTTAAAAATAGAATCTGGACATCAAATACTCCGTCAGATTAGATTTTTTTGTTTTTCTCTGCTTATAAAATCTTTTCTGTTCCTTTTTCTTTTTGTTTCTTTTCCTTTTTCAATAGTTTTTTTTTGTTTTTTTGTTTCTTTTCCATCAAATATTCCGACAAATATATATATATATATATAGGTAAGATAAATGAACAAGATATATTTGTAAG

mRNA sequence

GTGGGTATTGACAAAAATATTGTGTTAATTAATTATACACCATGTTGTGTTGGTGACCAATATTAAAAGATATTAATAACTGCAAAAATTTTATCTATATTAATAATTATTTGGGAGAAAAACTCATCTAATACAATTTTTCATTTTTTTTAAATGCAGGTGAAGGGTGCAAGTGTGAATTATTAGATAATTTGGGGGTATTATTGCAATAGTAGAAGTCACGAGGGGCCAAACGGAAAACTCACACAAAAAGTTATCATCACGGTACTAACCTAGACTCTGCTTCATTCTTTACCTTTATCATTTTCTCTGTACCATGCAAAGGCAATCGCTAGGCTCCCCACCAGCCTCCAAGCTCTACGGCGGCGGCCATGGCGCCGGAGCCAACTCCGACGGAGTTCCGGCCGACAATCAAAAGCGCAACAACAAGCACTCTCCATCTTCTTCTTCATCATTCCGATTCTCATTTCCGTCGCGGCCGGAGAAATTGGTTCACGCCATCCCTATCCTCACCGTCATCTGCTTCCTCATCCTCTACGGCTTCTCGCACAGTCCTTCGCAGTCAGATTTGGCTCAGATTCATGGATCCAAGCTTCCTTCGGCACATTTAGGTATAATGTAGCGGAAAATTTTGCGAATCGAGGTGTTTCTGTATGATTTCTGAAATTGAATTCCTATGTATTTTGGTGATTCATAGCAGAAATCAAAGCCGATGGAGATGAACTTATCGTACCAGGCAACATTGTGGCGATTCAAAGTTTCCGTAACCTGAAAGAGATCGAGAAATCTTATACTCGTAAATCTCGATCTCCGAGGAGATTCGCCGATTTCTAAACTCCGCATTTCCGATTATCTTATCTGCCGGTAAAATCTCACCGATCTCGTTTTCACCGTACGGTTTTTTTTTTTCTGTTGATATTTTTTTTAAAAATAGAATCTGGACATCAAATACTCCGTCAGATTAGATTTTTTTGTTTTTCTCTGCTTATAAAATCTTTTCTGTTCCTTTTTCTTTTTGTTTCTTTTCCTTTTTCAATAGTTTTTTTTTGTTTTTTTGTTTCTTTTCCATCAAATATTCCGACAAATATATATATATATATATAGGTAAGATAAATGAACAAGATATATTTGTAAG

Coding sequence (CDS)

ATGCAAAGGCAATCGCTAGGCTCCCCACCAGCCTCCAAGCTCTACGGCGGCGGCCATGGCGCCGGAGCCAACTCCGACGGAGTTCCGGCCGACAATCAAAAGCGCAACAACAAGCACTCTCCATCTTCTTCTTCATCATTCCGATTCTCATTTCCGTCGCGGCCGGAGAAATTGGTTCACGCCATCCCTATCCTCACCGTCATCTGCTTCCTCATCCTCTACGGCTTCTCGCACAGTCCTTCGCAGTCAGATTTGGCTCAGATTCATGGATCCAAGCTTCCTTCGGCACATTTAGGTATAATGTAG

Protein sequence

MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSSSFRFSFPSRPEKLVHAIPILTVICFLILYGFSHSPSQSDLAQIHGSKLPSAHLGIM

Homology

[Close]

BLAST of Sed0017013 vs. NCBI nr
Match: KAG6606266.1 (hypothetical protein SDJN03_03583, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036207.1 hypothetical protein SDJN02_03008 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.7e-26
Identity = 80/118 (67.80%), Postives = 84/118 (71.19%), Query Frame = 0


Query: 1   MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSS--------------SSS 60
           MQRQSLGS P SKL+  GHGAGA SD VPAD+QKR NKHSPSS              S S
Sbjct: 1   MQRQSLGS-PVSKLH--GHGAGAKSDAVPADDQKR-NKHSPSSPLILNYDGQDDEKASKS 60

Query: 61  FRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQSDLAQIHGSKLPSAHLGI 101
           FRFSFP+    R EK VHAIPILT+ICFLILY FSHSPSQSDLAQ HG K PS HL I
Sbjct: 61  FRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEI 114

[Close]

BLAST of Sed0017013 vs. NCBI nr
Match: XP_022995482.1 (uncharacterized protein LOC111491006 [Cucurbita maxima] >XP_023532562.1 uncharacterized protein LOC111794686 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.4 bits (324), Expect = 1.7e-26
Identity = 80/118 (67.80%), Postives = 84/118 (71.19%), Query Frame = 0


Query: 1   MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSS--------------SSS 60
           MQRQSLGS P SKL+  GHGAGA SD VPAD+QKR NKHSPSS              S S
Sbjct: 1   MQRQSLGS-PVSKLH--GHGAGAKSDAVPADDQKR-NKHSPSSSLILNYDGQDDDKASKS 60

Query: 61  FRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQSDLAQIHGSKLPSAHLGI 101
           FRFSFP+    R EK VHAIPILT+ICFLILY FSHSPSQSDLAQ HG K PS HL I
Sbjct: 61  FRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEI 114

[Close]

BLAST of Sed0017013 vs. NCBI nr
Match: XP_022930990.1 (uncharacterized protein LOC111437318 [Cucurbita moschata])

HSP 1 Score: 127.9 bits (320), Expect = 5.0e-26
Identity = 79/118 (66.95%), Postives = 83/118 (70.34%), Query Frame = 0


Query: 1   MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSS--------------SSS 60
           MQRQSLGS P SKL+  GHGAGA SD VPAD+QKR NKHSPSS              S S
Sbjct: 1   MQRQSLGS-PVSKLH--GHGAGAKSDAVPADDQKR-NKHSPSSPLILNYDGQDDEKASKS 60

Query: 61  FRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQSDLAQIHGSKLPSAHLGI 101
           FRFSFP+    R EK VHAIPILT+ CFLILY FSHSPSQSDLAQ HG K PS HL I
Sbjct: 61  FRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLAQFHGFKRPSEHLEI 114

[Close]

BLAST of Sed0017013 vs. NCBI nr
Match: XP_008466005.1 (PREDICTED: uncharacterized protein LOC103503567 isoform X2 [Cucumis melo] >KAA0038558.1 hypothetical protein E6C27_scaffold92G00860 [Cucumis melo var. makuwa] >TYK31184.1 hypothetical protein E5676_scaffold455G004680 [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 4.3e-25
Identity = 80/118 (67.80%), Postives = 83/118 (70.34%), Query Frame = 0


Query: 1   MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------S 60
           MQRQSLGS P SKL+  GHGAGA SD  PAD+QKR  KHSPSSSS              S
Sbjct: 1   MQRQSLGS-PVSKLH--GHGAGAKSDEDPADDQKR-KKHSPSSSSILNYGGQDDDKSSKS 60

Query: 61  FRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQSDLAQIHGSKLPSAHLGI 101
           FRFSFPS    R EKLVHAIPILT+ICFLILY FSHSPSQSDLAQ HG K PS  L I
Sbjct: 61  FRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSQQLEI 114

[Close]

BLAST of Sed0017013 vs. NCBI nr
Match: XP_004136199.1 (uncharacterized protein LOC101212292 isoform X2 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 5.6e-25
Identity = 80/118 (67.80%), Postives = 83/118 (70.34%), Query Frame = 0


Query: 1   MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------S 60
           MQRQSLGS P SKL+  GHGAGA SD  PAD+QKR  KHSPSSSS              S
Sbjct: 1   MQRQSLGS-PVSKLH--GHGAGAKSDEDPADDQKR-KKHSPSSSSILNYGGQDDDKSSKS 60

Query: 61  FRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQSDLAQIHGSKLPSAHLGI 101
           FRFSFPS    R EKLVHAIPILT+ICFLILY FSHSPSQSDLAQ HG K PS  L I
Sbjct: 61  FRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKHPSQQLEI 114

[Close]

BLAST of Sed0017013 vs. ExPASy TrEMBL
Match: A0A6J1JZ13 (uncharacterized protein LOC111491006 OS=Cucurbita maxima OX=3661 GN=LOC111491006 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 8.4e-27
Identity = 80/118 (67.80%), Postives = 84/118 (71.19%), Query Frame = 0


Query: 1   MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSS--------------SSS 60
           MQRQSLGS P SKL+  GHGAGA SD VPAD+QKR NKHSPSS              S S
Sbjct: 1   MQRQSLGS-PVSKLH--GHGAGAKSDAVPADDQKR-NKHSPSSSLILNYDGQDDDKASKS 60

Query: 61  FRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQSDLAQIHGSKLPSAHLGI 101
           FRFSFP+    R EK VHAIPILT+ICFLILY FSHSPSQSDLAQ HG K PS HL I
Sbjct: 61  FRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSEHLEI 114

[Close]

BLAST of Sed0017013 vs. ExPASy TrEMBL
Match: A0A6J1EYA9 (uncharacterized protein LOC111437318 OS=Cucurbita moschata OX=3662 GN=LOC111437318 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.4e-26
Identity = 79/118 (66.95%), Postives = 83/118 (70.34%), Query Frame = 0


Query: 1   MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSS--------------SSS 60
           MQRQSLGS P SKL+  GHGAGA SD VPAD+QKR NKHSPSS              S S
Sbjct: 1   MQRQSLGS-PVSKLH--GHGAGAKSDAVPADDQKR-NKHSPSSPLILNYDGQDDEKASKS 60

Query: 61  FRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQSDLAQIHGSKLPSAHLGI 101
           FRFSFP+    R EK VHAIPILT+ CFLILY FSHSPSQSDLAQ HG K PS HL I
Sbjct: 61  FRFSFPTPSPQRQEKFVHAIPILTIFCFLILYIFSHSPSQSDLAQFHGFKRPSEHLEI 114

[Close]

BLAST of Sed0017013 vs. ExPASy TrEMBL
Match: A0A5A7T6T2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004680 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.1e-25
Identity = 80/118 (67.80%), Postives = 83/118 (70.34%), Query Frame = 0


Query: 1   MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------S 60
           MQRQSLGS P SKL+  GHGAGA SD  PAD+QKR  KHSPSSSS              S
Sbjct: 1   MQRQSLGS-PVSKLH--GHGAGAKSDEDPADDQKR-KKHSPSSSSILNYGGQDDDKSSKS 60

Query: 61  FRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQSDLAQIHGSKLPSAHLGI 101
           FRFSFPS    R EKLVHAIPILT+ICFLILY FSHSPSQSDLAQ HG K PS  L I
Sbjct: 61  FRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSQQLEI 114

[Close]

BLAST of Sed0017013 vs. ExPASy TrEMBL
Match: A0A1S3CQJ2 (uncharacterized protein LOC103503567 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503567 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.1e-25
Identity = 80/118 (67.80%), Postives = 83/118 (70.34%), Query Frame = 0


Query: 1   MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------S 60
           MQRQSLGS P SKL+  GHGAGA SD  PAD+QKR  KHSPSSSS              S
Sbjct: 1   MQRQSLGS-PVSKLH--GHGAGAKSDEDPADDQKR-KKHSPSSSSILNYGGQDDDKSSKS 60

Query: 61  FRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQSDLAQIHGSKLPSAHLGI 101
           FRFSFPS    R EKLVHAIPILT+ICFLILY FSHSPSQSDLAQ HG K PS  L I
Sbjct: 61  FRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSQQLEI 114

[Close]

BLAST of Sed0017013 vs. ExPASy TrEMBL
Match: A0A0A0LE94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901050 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.7e-25
Identity = 80/118 (67.80%), Postives = 83/118 (70.34%), Query Frame = 0


Query: 1   MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSS--------------S 60
           MQRQSLGS P SKL+  GHGAGA SD  PAD+QKR  KHSPSSSS              S
Sbjct: 1   MQRQSLGS-PVSKLH--GHGAGAKSDEDPADDQKR-KKHSPSSSSILNYGGQDDDKSSKS 60

Query: 61  FRFSFPS----RPEKLVHAIPILTVICFLILYGFSHSPSQSDLAQIHGSKLPSAHLGI 101
           FRFSFPS    R EKLVHAIPILT+ICFLILY FSHSPSQSDLAQ HG K PS  L I
Sbjct: 61  FRFSFPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKHPSQQLEI 114

[Close]

BLAST of Sed0017013 vs. TAIR 10
Match: AT2G35470.1 (unknown protein; Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-10
Identity = 55/120 (45.83%), Postives = 63/120 (52.50%), Query Frame = 0


Query: 1   MQRQSLGSPPASKLYGGGHGAGANSDGVPADNQKRNNKHSPSSSSSF------------- 60
           MQR SL S  ASKL+  G   G   D    D+ K  +  SPSSSSS              
Sbjct: 1   MQRISLDS-SASKLHSYG---GRKDDTYDIDDLKPASS-SPSSSSSAVDYDDHELKDFKP 60

Query: 61  -RFSFPSRP--------EKLVHAIPILTVICFLILYGFSHSPSQSDLAQIHGSKLPSAHL 99
            R S    P        EKLVH IPILT+ICF+ILY  S++PSQSDLAQ +G   PS HL
Sbjct: 61  RRLSSLQSPFVTTNQKQEKLVHFIPILTLICFIILYLTSYAPSQSDLAQFNGFMRPSKHL 115

The following BLAST results are available for this feature:

BLAST of Sed0017013 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606266.1	1.7e-26	67.80	hypothetical protein SDJN03_03583, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022995482.1	1.7e-26	67.80	uncharacterized protein LOC111491006 [Cucurbita maxima] >XP_023532562.1 uncharac...	[more]
XP_022930990.1	5.0e-26	66.95	uncharacterized protein LOC111437318 [Cucurbita moschata]	[more]
XP_008466005.1	4.3e-25	67.80	PREDICTED: uncharacterized protein LOC103503567 isoform X2 [Cucumis melo] >KAA00...	[more]
XP_004136199.1	5.6e-25	67.80	uncharacterized protein LOC101212292 isoform X2 [Cucumis sativus]	[more]

BLAST of Sed0017013 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0017013 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZ13	8.4e-27	67.80	uncharacterized protein LOC111491006 OS=Cucurbita maxima OX=3661 GN=LOC111491006...	[more]
A0A6J1EYA9	2.4e-26	66.95	uncharacterized protein LOC111437318 OS=Cucurbita moschata OX=3662 GN=LOC1114373...	[more]
A0A5A7T6T2	2.1e-25	67.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CQJ2	2.1e-25	67.80	uncharacterized protein LOC103503567 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LE94	2.7e-25	67.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901050 PE=4 SV=1	[more]

BLAST of Sed0017013 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35470.1	2.4e-10	45.83	unknown protein; Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	PANTHER	PTHR35297	PROTEIN, PUTATIVE-RELATED	coord: 1..142
None	No IPR available	PANTHER	PTHR35297:SF2	PROTEIN, PUTATIVE-RELATED	coord: 1..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017013.1	Sed0017013.1	mRNA
Sed0017013.2	Sed0017013.2	mRNA
Sed0017013.3	Sed0017013.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane