Sed0016990 (gene) Chayote v1

Overview


Name	Sed0016990
Type	gene
Organism	Sechium edule (Chayote v1)
Description	F-box protein SKIP22-like
Location	LG07: 8600215 .. 8601543 (+)
RNA-Seq Expression	Sed0016990
Synteny	Sed0016990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTGCGTCTGCAATTCAAACAAACCATCAGAATCCAAGTCTCCGATGATTGCACTCTCGACAACCTAAAACAAACGCTCCTCCAAACACTCGGTTCTTCGTTACCGCCCGATTCTGTTCATCTCTCTCTCGATCGCAACGACGAGCTCCAAGAATCGCCATCGCCATCGCCAGAGAATTCACTGCGATCTCTAGGTATCAATTCCAATGATCTTATTTTCTTCTCTTTCAATCGAACAATCAAACAACCTCAGAGTATCGATTTGGATCTTGCGAAACTTAAGTTAGAGAATCTTGAACCATTCGGAGTTGTGCCGGAGAATTGTCCGAATTCGATTTTATTGAGCAGAGTAATGAAAGAGAAATTAGGCGGCGGTCGTAATGCTCACAAGCTTTTGGTAATTGCTGTTCACGCTGTGCTTTTGGACTCTGGATTATTGTTGATTGATCGTCTCGACATGGCGGAAGACTGGTCTTCGCCGTTTTCGGTAACGGTCCAATACACTTTTCGTGAACCTAACACCATGAAGGAAGTAGTTTTGTTGACATTTCGTAGCACATAACACTTTGTTATTGTTAACGAGTCGATCAACTGCAGTAGAGGATCGAATGTTTATCGTGTAACATTAGATACAAGAACATTTGCCCCGAATCTTGATTCGATTTGGGTGAATTCGATGTCGTCGAACAAGATAATTGATGAAAGCGAATGGAATATCATAGAAAGAAAAATGTGTAAATTATGGAAAGTGGTGAAGGATGGTCTTGTATTGCCAATGTTTATGATGCTTCCACATGATATTATGTTGAAGATTATGGAGTCTCTTTCTGGTGTTGACATTGGAAAACTTCAATGTGTGTGTACTGAATTGTGTGATTTGGGTAATGATAATGATTTGTGGAGGTTGAAGTTAAATCAAGAGTTTCCTTGGGTGGTTCATCCACAAAATGAGAGTTTTAAGCAAAAATTTAAGGAATGTCACAGAAATAAGAACATAATAGCTATTAGTATGGGGCAAGATCAGCCTCCACAGCCTGTTTTTGTACATGGGGAAGGCTATGGAGTTTGGCAAGCTTACATCGCGCCTTCCTTGCAATACCATTTCGCTCCGAGTTCATGGTATAACCCTTTTGCTCATGATCCGTTCCAATACGCTTTCTGTGCATATCATTACTGGAGAGGGCAAGACACTTTCCATCCACATCTTAGGCAAGGGCGAGGACCAAGCGCTTTCAATCCACATTTTGAATGGCAAGGGCAAGGGCGAGGACATAACGCATTCAATTCACATCATGGACTGCGAGGCCGAGGCCGAGGCCGATGA

mRNA sequence

ATGGAACTGCGTCTGCAATTCAAACAAACCATCAGAATCCAAGTCTCCGATGATTGCACTCTCGACAACCTAAAACAAACGCTCCTCCAAACACTCGGTTCTTCGTTACCGCCCGATTCTGTTCATCTCTCTCTCGATCGCAACGACGAGCTCCAAGAATCGCCATCGCCATCGCCAGAGAATTCACTGCGATCTCTAGGTATCAATTCCAATGATCTTATTTTCTTCTCTTTCAATCGAACAATCAAACAACCTCAGAGTATCGATTTGGATCTTGCGAAACTTAAGTTAGAGAATCTTGAACCATTCGGAGTTGTGCCGGAGAATTGTCCGAATTCGATTTTATTGAGCAGAGTAATGAAAGAGAAATTAGGCGGCGGTCGTAATGCTCACAAGCTTTTGGTAATTGCTGTTCACGCTGTGCTTTTGGACTCTGGATTATTGTTGATTGATCGTCTCGACATGGCGGAAGACTGGTCTTCGCCGTTTTCGGTAACGGTCCAATACACTTTTCGTGAACCTAACACCATGAAGGAAGTATCGATCAACTGCAGTAGAGGATCGAATGTTTATCGTGTAACATTAGATACAAGAACATTTGCCCCGAATCTTGATTCGATTTGGGTGAATTCGATGTCGTCGAACAAGATAATTGATGAAAGCGAATGGAATATCATAGAAAGAAAAATGTGTAAATTATGGAAAGTGGTGAAGGATGGTCTTGTATTGCCAATGTTTATGATGCTTCCACATGATATTATGTTGAAGATTATGGAGTCTCTTTCTGGTGTTGACATTGGAAAACTTCAATGTGTGTGTACTGAATTGTGTGATTTGGGTAATGATAATGATTTGTGGAGGTTGAAGTTAAATCAAGAGTTTCCTTGGGTGGTTCATCCACAAAATGAGAGTTTTAAGCAAAAATTTAAGGAATGTCACAGAAATAAGAACATAATAGCTATTAGTATGGGGCAAGATCAGCCTCCACAGCCTGTTTTTGTACATGGGGAAGGCTATGGAGTTTGGCAAGCTTACATCGCGCCTTCCTTGCAATACCATTTCGCTCCGAGTTCATGGTATAACCCTTTTGCTCATGATCCGTTCCAATACGCTTTCTGTGCATATCATTACTGGAGAGGGCAAGACACTTTCCATCCACATCTTAGGCAAGGGCGAGGACCAAGCGCTTTCAATCCACATTTTGAATGGCAAGGGCAAGGGCGAGGACATAACGCATTCAATTCACATCATGGACTGCGAGGCCGAGGCCGAGGCCGATGA

Coding sequence (CDS)

ATGGAACTGCGTCTGCAATTCAAACAAACCATCAGAATCCAAGTCTCCGATGATTGCACTCTCGACAACCTAAAACAAACGCTCCTCCAAACACTCGGTTCTTCGTTACCGCCCGATTCTGTTCATCTCTCTCTCGATCGCAACGACGAGCTCCAAGAATCGCCATCGCCATCGCCAGAGAATTCACTGCGATCTCTAGGTATCAATTCCAATGATCTTATTTTCTTCTCTTTCAATCGAACAATCAAACAACCTCAGAGTATCGATTTGGATCTTGCGAAACTTAAGTTAGAGAATCTTGAACCATTCGGAGTTGTGCCGGAGAATTGTCCGAATTCGATTTTATTGAGCAGAGTAATGAAAGAGAAATTAGGCGGCGGTCGTAATGCTCACAAGCTTTTGGTAATTGCTGTTCACGCTGTGCTTTTGGACTCTGGATTATTGTTGATTGATCGTCTCGACATGGCGGAAGACTGGTCTTCGCCGTTTTCGGTAACGGTCCAATACACTTTTCGTGAACCTAACACCATGAAGGAAGTATCGATCAACTGCAGTAGAGGATCGAATGTTTATCGTGTAACATTAGATACAAGAACATTTGCCCCGAATCTTGATTCGATTTGGGTGAATTCGATGTCGTCGAACAAGATAATTGATGAAAGCGAATGGAATATCATAGAAAGAAAAATGTGTAAATTATGGAAAGTGGTGAAGGATGGTCTTGTATTGCCAATGTTTATGATGCTTCCACATGATATTATGTTGAAGATTATGGAGTCTCTTTCTGGTGTTGACATTGGAAAACTTCAATGTGTGTGTACTGAATTGTGTGATTTGGGTAATGATAATGATTTGTGGAGGTTGAAGTTAAATCAAGAGTTTCCTTGGGTGGTTCATCCACAAAATGAGAGTTTTAAGCAAAAATTTAAGGAATGTCACAGAAATAAGAACATAATAGCTATTAGTATGGGGCAAGATCAGCCTCCACAGCCTGTTTTTGTACATGGGGAAGGCTATGGAGTTTGGCAAGCTTACATCGCGCCTTCCTTGCAATACCATTTCGCTCCGAGTTCATGGTATAACCCTTTTGCTCATGATCCGTTCCAATACGCTTTCTGTGCATATCATTACTGGAGAGGGCAAGACACTTTCCATCCACATCTTAGGCAAGGGCGAGGACCAAGCGCTTTCAATCCACATTTTGAATGGCAAGGGCAAGGGCGAGGACATAACGCATTCAATTCACATCATGGACTGCGAGGCCGAGGCCGAGGCCGATGA

Protein sequence

MELRLQFKQTIRIQVSDDCTLDNLKQTLLQTLGSSLPPDSVHLSLDRNDELQESPSPSPENSLRSLGINSNDLIFFSFNRTIKQPQSIDLDLAKLKLENLEPFGVVPENCPNSILLSRVMKEKLGGGRNAHKLLVIAVHAVLLDSGLLLIDRLDMAEDWSSPFSVTVQYTFREPNTMKEVSINCSRGSNVYRVTLDTRTFAPNLDSIWVNSMSSNKIIDESEWNIIERKMCKLWKVVKDGLVLPMFMMLPHDIMLKIMESLSGVDIGKLQCVCTELCDLGNDNDLWRLKLNQEFPWVVHPQNESFKQKFKECHRNKNIIAISMGQDQPPQPVFVHGEGYGVWQAYIAPSLQYHFAPSSWYNPFAHDPFQYAFCAYHYWRGQDTFHPHLRQGRGPSAFNPHFEWQGQGRGHNAFNSHHGLRGRGRGR

Homology

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BLAST of Sed0016990 vs. NCBI nr
Match: XP_008454420.1 (PREDICTED: F-box protein SKIP22-like [Cucumis melo] >ADN33816.1 F-box family protein [Cucumis melo subsp. melo] >TYK29445.1 F-box protein SKIP22-like [Cucumis melo var. makuwa])

HSP 1 Score: 260.4 bits (664), Expect = 2.7e-65
Identity = 190/460 (41.30%), Postives = 244/460 (53.04%), Query Frame = 0


Query: 1   MELR---LQFKQTIRIQVSDDCTLDNLKQTLLQTLGSSLPPDSVHLSLDRNDELQESPSP 60
           M+LR   L+ KQT+RI+V D  TL++LKQTLLQTL SS   DS+HLSL+R DELQ S   
Sbjct: 1   MKLRLRSLESKQTLRIEVPDPSTLNHLKQTLLQTLSSSFSADSLHLSLNRKDELQAS--- 60

Query: 61  SPENSLRSLGINSNDLIFFSFNRTI----------------------------------- 120
           SPE+SL SLGI S DL+FF+F  +                                    
Sbjct: 61  SPEDSLHSLGITSGDLVFFTFKPSEFSSLGARATPIQSFQPPPLSGSSSLVSSSSLPQVK 120

Query: 121 -KQPQSIDLDLAKLKLENLEPFGVVPEN-------------------------------- 180
            KQ   ID DL K +LEN EP  +VP++                                
Sbjct: 121 GKQLLGIDCDLKKPRLENSEPESMVPDSSGAELTTSSMIEESDCEEMEVEEEPTVVVEKK 180

Query: 181 CPNSILLSRVMKEKLGGGRNAHKLLVIAVHAVLLDSGLLLID--------RLDMAEDWSS 240
           C   I L RV+KE+LG  RNAHKLLV AVHAVLL+SG +LI+           M EDW S
Sbjct: 181 CSRPIFLRRVLKEELGYDRNAHKLLVTAVHAVLLESGFVLINPNLGFEDSPFRMPEDWPS 240

Query: 241 P-FSVTVQYTFRE-------PNTMKEV----------------SINCSRGSNVYRVTLDT 300
           P F++++ YT  E        +TM EV                S+NCSRGS+VYRV+LD 
Sbjct: 241 PSFTMSLWYTLPELLTKRGKNSTMTEVVLLKFQSLGYFVNVYGSLNCSRGSSVYRVSLDE 300

Query: 301 RTFAPNLDSIWVNSMSSNKIIDESEWNIIERKMCKLWKVVKDGLVLPM------------ 332
           R FAPNLD IWV+S+ SN I+DE E N  E+++ + WK+VKD L LP+            
Sbjct: 301 RKFAPNLDLIWVDSV-SNYIMDEKEGN-PEKQVFEFWKIVKDALALPLLIDICEKTGLPP 360

[Close]

BLAST of Sed0016990 vs. NCBI nr
Match: KAA0044316.1 (F-box protein SKIP22-like [Cucumis melo var. makuwa])

HSP 1 Score: 257.7 bits (657), Expect = 1.8e-64
Identity = 188/460 (40.87%), Postives = 244/460 (53.04%), Query Frame = 0


Query: 1   MELR---LQFKQTIRIQVSDDCTLDNLKQTLLQTLGSSLPPDSVHLSLDRNDELQESPSP 60
           M+LR   L+ KQT+RI+V D  TL++LK+TLLQTL SS   DS+HLSL+R DELQ S   
Sbjct: 1   MKLRLRSLESKQTLRIEVPDPSTLNHLKRTLLQTLSSSFSADSLHLSLNRKDELQAS--- 60

Query: 61  SPENSLRSLGINSNDLIFFSFNRTI----------------------------------- 120
           SPE+SL SLGI S DL+FF+F  +                                    
Sbjct: 61  SPEDSLHSLGITSGDLVFFTFKPSEFSSLGARATPIQSFQPPPLSGSSSLVSSSSLPQVK 120

Query: 121 -KQPQSIDLDLAKLKLENLEPFGVVPEN-------------------------------- 180
            K+   ID DL K +LEN EP  +VP++                                
Sbjct: 121 GKELLGIDCDLKKPRLENSEPESMVPDSSGAELTTSSMIEESDCEEMEVEEEPTVVVEKK 180

Query: 181 CPNSILLSRVMKEKLGGGRNAHKLLVIAVHAVLLDSGLLLID--------RLDMAEDWSS 240
           C   I L RV+KE+LG  RNAHKLLV AVHAVLL+SG +LI+           M EDW S
Sbjct: 181 CSRPIFLRRVLKEELGYDRNAHKLLVTAVHAVLLESGFVLINPNLGFEDSPFRMPEDWPS 240

Query: 241 P-FSVTVQYTFRE-------PNTMKEV----------------SINCSRGSNVYRVTLDT 300
           P F++++ YT  E        +TM EV                S+NCSRGS+VYRV+LD 
Sbjct: 241 PSFTMSLWYTLPELLTKRGKNSTMTEVVLLKFQSLGYFVNVYGSLNCSRGSSVYRVSLDE 300

Query: 301 RTFAPNLDSIWVNSMSSNKIIDESEWNIIERKMCKLWKVVKDGLVLPM------------ 332
           R FAPNLD IWV+S+ SN I+DE E N  E+++ + WK+VKD L LP+            
Sbjct: 301 RKFAPNLDLIWVDSV-SNYIMDEKEGN-PEKQVFEFWKIVKDALALPLLIDICEKTGLPP 360

[Close]

BLAST of Sed0016990 vs. NCBI nr
Match: XP_038905379.1 (F-box protein SKIP22-like [Benincasa hispida])

HSP 1 Score: 256.5 bits (654), Expect = 4.0e-64
Identity = 183/415 (44.10%), Postives = 226/415 (54.46%), Query Frame = 0


Query: 1   MELR---LQFKQTIRIQVSDDCTLDNLKQTLLQTLGSSLPPDSVHLSLDRNDELQESPSP 60
           M+LR   L+ KQT+RI+V D CTLD+LKQTLLQTL SS   DS+HLSL+R DELQ S   
Sbjct: 1   MKLRLRSLESKQTLRIEVPDPCTLDHLKQTLLQTLSSSFSADSLHLSLNRKDELQGS--- 60

Query: 61  SPENSLRSLGINSNDLIFFSFN-------------------------------RTI--KQ 120
           SPE+SL SLGI S DL+FF+F                                R +  KQ
Sbjct: 61  SPEDSLHSLGITSGDLVFFTFKPSEFSSLGGTSIQSFQGLLPCSSSQVSSSSLRLVKGKQ 120

Query: 121 PQSIDLDLAKLKLENL--------------------------------------EPFGVV 180
            Q ID DL K +LE                                        EP  VV
Sbjct: 121 IQGIDCDLKKPRLEESEAKSMGLESLGVEMTTSSMIEEGEKPVESDCEEMEVEEEPTVVV 180

Query: 181 PENCPNSILLSRVMKEKLGGGRNAHKLLVIAVHAVLLDSGLLLID-RLD-------MAED 240
            +     I L RV+KE+LG  RNAHKLLV AVHAVLL+SG +LI+  LD       M ED
Sbjct: 181 EKKFSRPIFLRRVLKEELGYDRNAHKLLVTAVHAVLLESGFVLINPNLDSEDNPFRMPED 240

Query: 241 WSSP-FSVTVQYTFRE-------PNTMKEV----------------SINCSRGSNVYRVT 295
           W SP FS+++ YT  E        +TM EV                S+NCSRGS+VYRV+
Sbjct: 241 WPSPSFSMSLWYTLPELLTKGGKNSTMTEVVLLKFQSLGYFVNVYGSLNCSRGSSVYRVS 300

[Close]

BLAST of Sed0016990 vs. NCBI nr
Match: XP_004150266.1 (F-box protein SKIP22 [Cucumis sativus] >KGN52738.1 hypothetical protein Csa_014631 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 4.4e-63
Identity = 181/432 (41.90%), Postives = 232/432 (53.70%), Query Frame = 0


Query: 1   MELR---LQFKQTIRIQVSDDCTLDNLKQTLLQTLGSSLPPDSVHLSLDRNDELQESPSP 60
           M+LR   L+  Q++RI+V D  TLD+LK TLLQTL SS   DS+HLSL+R DELQ S   
Sbjct: 1   MKLRLRSLESNQSLRIEVPDPSTLDHLKHTLLQTLSSSFSADSLHLSLNRKDELQAS--- 60

Query: 61  SPENSLRSLGINSNDLIFFSFNRTI---------------------------------KQ 120
           SPE+SL SLGI S DL+FF+F                                     KQ
Sbjct: 61  SPEDSLHSLGITSGDLLFFTFKPPEFSSLGATSIQSFQPPLPGSSSQVSSSSLPQVEGKQ 120

Query: 121 PQSIDLDLAKLKLENLEPFGVVPEN--------------------------------CPN 180
              ID DL K +LEN EP  VVPE+                                C  
Sbjct: 121 LLGIDCDLKKPRLENSEPESVVPESSSAELTACSMIEESDCEEMEVEEEPTVVVENRCSR 180

Query: 181 SILLSRVMKEKLGGGRNAHKLLVIAVHAVLLDSGLLLID--------RLDMAEDWSSP-F 240
            I L RV+KE+LG  RNAHKLLV AVHAVLL+SG +LI+           M EDW SP F
Sbjct: 181 PIFLRRVLKEELGYDRNAHKLLVTAVHAVLLESGFVLINPNLGFDDSPFRMPEDWPSPSF 240

Query: 241 SVTVQYTF------REPN-TMKEV----------------SINCSRGSNVYRVTLDTRTF 300
           ++++ YT       RE N TM EV                S++ SRGS+VYRV+LD R F
Sbjct: 241 TMSLWYTIPELLTKREKNSTMTEVVLLKFQSLGYFVNVYGSLSYSRGSSVYRVSLDERKF 300

Query: 301 APNLDSIWVNSMSSNKIIDESEWNIIERKMCKLWKVVKDGLVLPM--------------- 317
           APNLD IWV+S+ SN I+DE E N  E+++ + WK+VKD L LP+               
Sbjct: 301 APNLDLIWVDSV-SNYILDEKEGN-PEKQVFEFWKIVKDALALPLLIDICEKTGLPPPAS 360

[Close]

BLAST of Sed0016990 vs. NCBI nr
Match: XP_022149297.1 (F-box protein SKIP22-like [Momordica charantia])

HSP 1 Score: 250.4 bits (638), Expect = 2.8e-62
Identity = 172/415 (41.45%), Postives = 224/415 (53.98%), Query Frame = 0


Query: 1   MELR---LQFKQTIRIQVSDDCTLDNLKQTLLQTLGSSLPPDSVHLSLDRNDELQESPSP 60
           M+LR   L+ K+T+RI+V D  TL +LK+TLLQTL SS   DS+ LSL+R DEL+ S   
Sbjct: 1   MKLRLRSLESKETVRIEVPDQSTLQHLKETLLQTLSSSFSADSLRLSLNRKDELRGS--- 60

Query: 61  SPENSLRSLGINSNDLIFFSFNRT----------------------------IKQPQSID 120
           SPE++L  +GI S DL+FF+FN +                             KQ Q ID
Sbjct: 61  SPEDTLHFMGITSGDLLFFAFNPSGFSSQGGTSIQSPQAPVPGASSSRPQVQGKQIQGID 120

Query: 121 LDLAKLKLENL-------------------------------------------EPFGVV 180
            DL K +LEN                                            EP GVV
Sbjct: 121 CDLKKPRLENCHVVEHPPLSMGPESLGEEMTTGSTVEEGEKILDSDCEEMDVEDEPIGVV 180

Query: 181 PENCPNSILLSRVMKEKLGGGRNAHKLLVIAVHAVLLDSGLLLID--------RLDMAED 240
            + C   I L RV+KE+LG  RNAHKLLV AVHAVLL+SG +LID           M ED
Sbjct: 181 EKKCSRPIFLRRVLKEELGYDRNAHKLLVTAVHAVLLESGFVLIDPNLGAEDNHFHMPED 240

Query: 241 WSSP-FSVTVQYTFRE-------PNTMKEV----------------SINCSRGSNVYRVT 295
           W SP FS+++ YT  E        + M E+                S++CSRGS+VYRV+
Sbjct: 241 WPSPSFSMSLWYTLPELLAEGGKNSAMTEIVLLKFQSLGHFVNVYGSLSCSRGSSVYRVS 300

[Close]

BLAST of Sed0016990 vs. ExPASy Swiss-Prot
Match: Q9ZUB8 (F-box protein SKIP22 OS=Arabidopsis thaliana OX=3702 GN=SKIP22 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-27
Identity = 120/426 (28.17%), Postives = 193/426 (45.31%), Query Frame = 0


Query: 1   MELRL---QFKQTIRIQVSDDCTLDNLKQTLLQTLGSSLPPDSVHLSLDRNDELQESPSP 60
           M+LRL   + ++T++++++D  TL +L++ +  T+     P SVHLSL+R DEL    +P
Sbjct: 1   MKLRLRHHETRETLKLELADADTLHDLRRRINPTV-----PSSVHLSLNRKDEL---ITP 60

Query: 61  SPENSLRSLGINSNDLIFFSF--------------------------------------- 120
           SPE++LRSLG+ S DLI+FS                                        
Sbjct: 61  SPEDTLRSLGLISGDLIYFSLEAGESSNWKLRDSETVASQSESNQTSVHDSIGFAEVDVV 120

Query: 121 --------NRTIKQP---------------QSIDLDLAKLKLENL-EPFGVVPENCPNSI 180
                   N +++ P               + +D++LA    + L EPF           
Sbjct: 121 PDQAKSNPNTSVEDPEGDISGMEGPEPMDVEQLDMELAAAGSKRLSEPF----------- 180

Query: 181 LLSRVMKEKLGGGRNAHKLLVIAVHAVLLDSGLLLIDRLDMAEDWSSP-FSVTVQYTF-- 240
            L  ++ EK  G  +    L ++VHAV+L+SG +L++      ++S    +V+++YT   
Sbjct: 181 FLKNILLEK-SGDTSELTTLALSVHAVMLESGFVLLNHGSDKFNFSKELLTVSLRYTLPE 240

Query: 241 ----REPNTMKEVSINCSR-------------GSNVYRVTLDTRTFAPNLDSIWVNSMSS 300
               ++ NT++ VS+                  S    + LD R F P +D +   S S 
Sbjct: 241 LIKSKDTNTIESVSVKFQNLGPVVVVYGTVGGSSGRVHMNLDKRRFVPVIDLVMDTSTS- 300

Query: 301 NKIIDESEWNIIERKMCKLWKVVKDGLVLPM---------------FMMLPHDIMLKIME 323
               DE   + I R++   W++VKD LV+P+                M LP ++ LKI+E
Sbjct: 301 ----DEEGSSSIYREVFMFWRMVKDRLVIPLLIGICDKAGLEPPPCLMRLPTELKLKILE 360

[Close]

BLAST of Sed0016990 vs. ExPASy Swiss-Prot
Match: Q9ZUB9 (Putative F-box protein At1g23770 OS=Arabidopsis thaliana OX=3702 GN=At1g23770 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.8e-20
Identity = 85/283 (30.04%), Postives = 137/283 (48.41%), Query Frame = 0


Query: 79  NRTIKQPQSIDLDLAKLKLENL-EPFGVVPENCPNSILLSRVMKEKLGGGRNAHKLLVIA 138
           N  I+ P  +D++LA  K + L EPF            L  V+ EK  G  +    L ++
Sbjct: 22  NSGIEGPVPMDVELAAAKSKRLSEPF-----------FLKNVLLEK-SGDTSDLTALALS 81

Query: 139 VHAVLLDSGLLLIDRLDMAEDWSSP-FSVTVQYTF------REPNTMKEVSI-------- 198
           VHAV+L+SG +L+D       +S    SV+++YT       ++ NT++ V++        
Sbjct: 82  VHAVMLESGFVLLDHGSDKFSFSKKLLSVSLRYTLPELITRKDTNTVESVTVRFQNIGPR 141

Query: 199 ---------NCSRGSNVYRVTLDTRTFAPNLDSIWVNSMSSNKIIDESEWNIIERKMCKL 258
                    +C R   V+  +LD   F P +D + V+++   K    S +    R++  L
Sbjct: 142 LVVYGTLGGSCKR---VHMTSLDKSRFLPVIDLV-VDTLKFEKQGSSSYY----REVFML 201

Query: 259 WKVVKDGLVLPM---------------FMMLPHDIMLKIMESLSGVDIGKLQCVCTELCD 318
           W++VKD LV+P+                M+LP ++ LKI+E L GV IG + CVCTE+  
Sbjct: 202 WRMVKDELVIPLLIGLCDKAGLESPPCLMLLPTELKLKILELLPGVSIGYMACVCTEMRY 261

[Close]

BLAST of Sed0016990 vs. ExPASy Swiss-Prot
Match: O64600 (F-box protein At1g70360 OS=Arabidopsis thaliana OX=3702 GN=At1g70360 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.7e-12
Identity = 54/169 (31.95%), Postives = 90/169 (53.25%), Query Frame = 0


Query: 133 LLVIAVHAVLLDSGLLLID-RLDMAEDWSSPFSVTVQYTFREPNTMKEVSINCSR----G 192
           ++++ VHAV+L+SG +L D    M   +S    V++ YT   P+    V +N  +    G
Sbjct: 12  IVIMTVHAVMLESGFVLFDPDSSMRFSFSKKTLVSLNYTL--PSVKGIVGLNFEKEAIVG 71

Query: 193 SNVYRVTLDTRTFAPNLDSIWVNSMSSNKIIDESEWNIIERKMCKLWKVVKDGLVLPM-- 252
           S V  V++D R++   +D +    M + K  +E +   I+ K+   W+++KDG+V P+  
Sbjct: 72  SFVRVVSIDKRSYVHIVDLL----METLKSDEEEDTLSIDCKVLVWWRMIKDGIVTPLLV 131

Query: 253 -------------FMMLPHDIMLKIMESLSGVDIGKLQCVCTELCDLGN 282
                        F+ LP ++  KI+ESL GVDIG L CV +EL D+ +
Sbjct: 132 DLCYKTGLELPPCFISLPRELKHKILESLPGVDIGTLACVSSELRDMAS 174

[Close]

BLAST of Sed0016990 vs. ExPASy TrEMBL
Match: A0A5D3E231 (F-box protein SKIP22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00380 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.3e-65
Identity = 190/460 (41.30%), Postives = 244/460 (53.04%), Query Frame = 0


Query: 1   MELR---LQFKQTIRIQVSDDCTLDNLKQTLLQTLGSSLPPDSVHLSLDRNDELQESPSP 60
           M+LR   L+ KQT+RI+V D  TL++LKQTLLQTL SS   DS+HLSL+R DELQ S   
Sbjct: 1   MKLRLRSLESKQTLRIEVPDPSTLNHLKQTLLQTLSSSFSADSLHLSLNRKDELQAS--- 60

Query: 61  SPENSLRSLGINSNDLIFFSFNRTI----------------------------------- 120
           SPE+SL SLGI S DL+FF+F  +                                    
Sbjct: 61  SPEDSLHSLGITSGDLVFFTFKPSEFSSLGARATPIQSFQPPPLSGSSSLVSSSSLPQVK 120

Query: 121 -KQPQSIDLDLAKLKLENLEPFGVVPEN-------------------------------- 180
            KQ   ID DL K +LEN EP  +VP++                                
Sbjct: 121 GKQLLGIDCDLKKPRLENSEPESMVPDSSGAELTTSSMIEESDCEEMEVEEEPTVVVEKK 180

Query: 181 CPNSILLSRVMKEKLGGGRNAHKLLVIAVHAVLLDSGLLLID--------RLDMAEDWSS 240
           C   I L RV+KE+LG  RNAHKLLV AVHAVLL+SG +LI+           M EDW S
Sbjct: 181 CSRPIFLRRVLKEELGYDRNAHKLLVTAVHAVLLESGFVLINPNLGFEDSPFRMPEDWPS 240

Query: 241 P-FSVTVQYTFRE-------PNTMKEV----------------SINCSRGSNVYRVTLDT 300
           P F++++ YT  E        +TM EV                S+NCSRGS+VYRV+LD 
Sbjct: 241 PSFTMSLWYTLPELLTKRGKNSTMTEVVLLKFQSLGYFVNVYGSLNCSRGSSVYRVSLDE 300

Query: 301 RTFAPNLDSIWVNSMSSNKIIDESEWNIIERKMCKLWKVVKDGLVLPM------------ 332
           R FAPNLD IWV+S+ SN I+DE E N  E+++ + WK+VKD L LP+            
Sbjct: 301 RKFAPNLDLIWVDSV-SNYIMDEKEGN-PEKQVFEFWKIVKDALALPLLIDICEKTGLPP 360

[Close]

BLAST of Sed0016990 vs. ExPASy TrEMBL
Match: E5GBH4 (F-box family protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.3e-65
Identity = 190/460 (41.30%), Postives = 244/460 (53.04%), Query Frame = 0


Query: 1   MELR---LQFKQTIRIQVSDDCTLDNLKQTLLQTLGSSLPPDSVHLSLDRNDELQESPSP 60
           M+LR   L+ KQT+RI+V D  TL++LKQTLLQTL SS   DS+HLSL+R DELQ S   
Sbjct: 1   MKLRLRSLESKQTLRIEVPDPSTLNHLKQTLLQTLSSSFSADSLHLSLNRKDELQAS--- 60

Query: 61  SPENSLRSLGINSNDLIFFSFNRTI----------------------------------- 120
           SPE+SL SLGI S DL+FF+F  +                                    
Sbjct: 61  SPEDSLHSLGITSGDLVFFTFKPSEFSSLGARATPIQSFQPPPLSGSSSLVSSSSLPQVK 120

Query: 121 -KQPQSIDLDLAKLKLENLEPFGVVPEN-------------------------------- 180
            KQ   ID DL K +LEN EP  +VP++                                
Sbjct: 121 GKQLLGIDCDLKKPRLENSEPESMVPDSSGAELTTSSMIEESDCEEMEVEEEPTVVVEKK 180

Query: 181 CPNSILLSRVMKEKLGGGRNAHKLLVIAVHAVLLDSGLLLID--------RLDMAEDWSS 240
           C   I L RV+KE+LG  RNAHKLLV AVHAVLL+SG +LI+           M EDW S
Sbjct: 181 CSRPIFLRRVLKEELGYDRNAHKLLVTAVHAVLLESGFVLINPNLGFEDSPFRMPEDWPS 240

Query: 241 P-FSVTVQYTFRE-------PNTMKEV----------------SINCSRGSNVYRVTLDT 300
           P F++++ YT  E        +TM EV                S+NCSRGS+VYRV+LD 
Sbjct: 241 PSFTMSLWYTLPELLTKRGKNSTMTEVVLLKFQSLGYFVNVYGSLNCSRGSSVYRVSLDE 300

Query: 301 RTFAPNLDSIWVNSMSSNKIIDESEWNIIERKMCKLWKVVKDGLVLPM------------ 332
           R FAPNLD IWV+S+ SN I+DE E N  E+++ + WK+VKD L LP+            
Sbjct: 301 RKFAPNLDLIWVDSV-SNYIMDEKEGN-PEKQVFEFWKIVKDALALPLLIDICEKTGLPP 360

[Close]

BLAST of Sed0016990 vs. ExPASy TrEMBL
Match: A0A1S3BZC5 (F-box protein SKIP22-like OS=Cucumis melo OX=3656 GN=LOC103494830 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.3e-65
Identity = 190/460 (41.30%), Postives = 244/460 (53.04%), Query Frame = 0


Query: 1   MELR---LQFKQTIRIQVSDDCTLDNLKQTLLQTLGSSLPPDSVHLSLDRNDELQESPSP 60
           M+LR   L+ KQT+RI+V D  TL++LKQTLLQTL SS   DS+HLSL+R DELQ S   
Sbjct: 1   MKLRLRSLESKQTLRIEVPDPSTLNHLKQTLLQTLSSSFSADSLHLSLNRKDELQAS--- 60

Query: 61  SPENSLRSLGINSNDLIFFSFNRTI----------------------------------- 120
           SPE+SL SLGI S DL+FF+F  +                                    
Sbjct: 61  SPEDSLHSLGITSGDLVFFTFKPSEFSSLGARATPIQSFQPPPLSGSSSLVSSSSLPQVK 120

Query: 121 -KQPQSIDLDLAKLKLENLEPFGVVPEN-------------------------------- 180
            KQ   ID DL K +LEN EP  +VP++                                
Sbjct: 121 GKQLLGIDCDLKKPRLENSEPESMVPDSSGAELTTSSMIEESDCEEMEVEEEPTVVVEKK 180

Query: 181 CPNSILLSRVMKEKLGGGRNAHKLLVIAVHAVLLDSGLLLID--------RLDMAEDWSS 240
           C   I L RV+KE+LG  RNAHKLLV AVHAVLL+SG +LI+           M EDW S
Sbjct: 181 CSRPIFLRRVLKEELGYDRNAHKLLVTAVHAVLLESGFVLINPNLGFEDSPFRMPEDWPS 240

Query: 241 P-FSVTVQYTFRE-------PNTMKEV----------------SINCSRGSNVYRVTLDT 300
           P F++++ YT  E        +TM EV                S+NCSRGS+VYRV+LD 
Sbjct: 241 PSFTMSLWYTLPELLTKRGKNSTMTEVVLLKFQSLGYFVNVYGSLNCSRGSSVYRVSLDE 300

Query: 301 RTFAPNLDSIWVNSMSSNKIIDESEWNIIERKMCKLWKVVKDGLVLPM------------ 332
           R FAPNLD IWV+S+ SN I+DE E N  E+++ + WK+VKD L LP+            
Sbjct: 301 RKFAPNLDLIWVDSV-SNYIMDEKEGN-PEKQVFEFWKIVKDALALPLLIDICEKTGLPP 360

[Close]

BLAST of Sed0016990 vs. ExPASy TrEMBL
Match: A0A5A7TQD4 (F-box protein SKIP22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00380 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 8.6e-65
Identity = 188/460 (40.87%), Postives = 244/460 (53.04%), Query Frame = 0


Query: 1   MELR---LQFKQTIRIQVSDDCTLDNLKQTLLQTLGSSLPPDSVHLSLDRNDELQESPSP 60
           M+LR   L+ KQT+RI+V D  TL++LK+TLLQTL SS   DS+HLSL+R DELQ S   
Sbjct: 1   MKLRLRSLESKQTLRIEVPDPSTLNHLKRTLLQTLSSSFSADSLHLSLNRKDELQAS--- 60

Query: 61  SPENSLRSLGINSNDLIFFSFNRTI----------------------------------- 120
           SPE+SL SLGI S DL+FF+F  +                                    
Sbjct: 61  SPEDSLHSLGITSGDLVFFTFKPSEFSSLGARATPIQSFQPPPLSGSSSLVSSSSLPQVK 120

Query: 121 -KQPQSIDLDLAKLKLENLEPFGVVPEN-------------------------------- 180
            K+   ID DL K +LEN EP  +VP++                                
Sbjct: 121 GKELLGIDCDLKKPRLENSEPESMVPDSSGAELTTSSMIEESDCEEMEVEEEPTVVVEKK 180

Query: 181 CPNSILLSRVMKEKLGGGRNAHKLLVIAVHAVLLDSGLLLID--------RLDMAEDWSS 240
           C   I L RV+KE+LG  RNAHKLLV AVHAVLL+SG +LI+           M EDW S
Sbjct: 181 CSRPIFLRRVLKEELGYDRNAHKLLVTAVHAVLLESGFVLINPNLGFEDSPFRMPEDWPS 240

Query: 241 P-FSVTVQYTFRE-------PNTMKEV----------------SINCSRGSNVYRVTLDT 300
           P F++++ YT  E        +TM EV                S+NCSRGS+VYRV+LD 
Sbjct: 241 PSFTMSLWYTLPELLTKRGKNSTMTEVVLLKFQSLGYFVNVYGSLNCSRGSSVYRVSLDE 300

Query: 301 RTFAPNLDSIWVNSMSSNKIIDESEWNIIERKMCKLWKVVKDGLVLPM------------ 332
           R FAPNLD IWV+S+ SN I+DE E N  E+++ + WK+VKD L LP+            
Sbjct: 301 RKFAPNLDLIWVDSV-SNYIMDEKEGN-PEKQVFEFWKIVKDALALPLLIDICEKTGLPP 360

[Close]

BLAST of Sed0016990 vs. ExPASy TrEMBL
Match: A0A0A0KT22 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G000590 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.1e-63
Identity = 181/432 (41.90%), Postives = 232/432 (53.70%), Query Frame = 0


Query: 1   MELR---LQFKQTIRIQVSDDCTLDNLKQTLLQTLGSSLPPDSVHLSLDRNDELQESPSP 60
           M+LR   L+  Q++RI+V D  TLD+LK TLLQTL SS   DS+HLSL+R DELQ S   
Sbjct: 1   MKLRLRSLESNQSLRIEVPDPSTLDHLKHTLLQTLSSSFSADSLHLSLNRKDELQAS--- 60

Query: 61  SPENSLRSLGINSNDLIFFSFNRTI---------------------------------KQ 120
           SPE+SL SLGI S DL+FF+F                                     KQ
Sbjct: 61  SPEDSLHSLGITSGDLLFFTFKPPEFSSLGATSIQSFQPPLPGSSSQVSSSSLPQVEGKQ 120

Query: 121 PQSIDLDLAKLKLENLEPFGVVPEN--------------------------------CPN 180
              ID DL K +LEN EP  VVPE+                                C  
Sbjct: 121 LLGIDCDLKKPRLENSEPESVVPESSSAELTACSMIEESDCEEMEVEEEPTVVVENRCSR 180

Query: 181 SILLSRVMKEKLGGGRNAHKLLVIAVHAVLLDSGLLLID--------RLDMAEDWSSP-F 240
            I L RV+KE+LG  RNAHKLLV AVHAVLL+SG +LI+           M EDW SP F
Sbjct: 181 PIFLRRVLKEELGYDRNAHKLLVTAVHAVLLESGFVLINPNLGFDDSPFRMPEDWPSPSF 240

Query: 241 SVTVQYTF------REPN-TMKEV----------------SINCSRGSNVYRVTLDTRTF 300
           ++++ YT       RE N TM EV                S++ SRGS+VYRV+LD R F
Sbjct: 241 TMSLWYTIPELLTKREKNSTMTEVVLLKFQSLGYFVNVYGSLSYSRGSSVYRVSLDERKF 300

Query: 301 APNLDSIWVNSMSSNKIIDESEWNIIERKMCKLWKVVKDGLVLPM--------------- 317
           APNLD IWV+S+ SN I+DE E N  E+++ + WK+VKD L LP+               
Sbjct: 301 APNLDLIWVDSV-SNYILDEKEGN-PEKQVFEFWKIVKDALALPLLIDICEKTGLPPPAS 360

[Close]

BLAST of Sed0016990 vs. TAIR 10
Match: AT1G23780.1 (F-box family protein )

HSP 1 Score: 125.6 bits (314), Expect = 9.8e-29
Identity = 120/426 (28.17%), Postives = 193/426 (45.31%), Query Frame = 0


Query: 1   MELRL---QFKQTIRIQVSDDCTLDNLKQTLLQTLGSSLPPDSVHLSLDRNDELQESPSP 60
           M+LRL   + ++T++++++D  TL +L++ +  T+     P SVHLSL+R DEL    +P
Sbjct: 1   MKLRLRHHETRETLKLELADADTLHDLRRRINPTV-----PSSVHLSLNRKDEL---ITP 60

Query: 61  SPENSLRSLGINSNDLIFFSF--------------------------------------- 120
           SPE++LRSLG+ S DLI+FS                                        
Sbjct: 61  SPEDTLRSLGLISGDLIYFSLEAGESSNWKLRDSETVASQSESNQTSVHDSIGFAEVDVV 120

Query: 121 --------NRTIKQP---------------QSIDLDLAKLKLENL-EPFGVVPENCPNSI 180
                   N +++ P               + +D++LA    + L EPF           
Sbjct: 121 PDQAKSNPNTSVEDPEGDISGMEGPEPMDVEQLDMELAAAGSKRLSEPF----------- 180

Query: 181 LLSRVMKEKLGGGRNAHKLLVIAVHAVLLDSGLLLIDRLDMAEDWSSP-FSVTVQYTF-- 240
            L  ++ EK  G  +    L ++VHAV+L+SG +L++      ++S    +V+++YT   
Sbjct: 181 FLKNILLEK-SGDTSELTTLALSVHAVMLESGFVLLNHGSDKFNFSKELLTVSLRYTLPE 240

Query: 241 ----REPNTMKEVSINCSR-------------GSNVYRVTLDTRTFAPNLDSIWVNSMSS 300
               ++ NT++ VS+                  S    + LD R F P +D +   S S 
Sbjct: 241 LIKSKDTNTIESVSVKFQNLGPVVVVYGTVGGSSGRVHMNLDKRRFVPVIDLVMDTSTS- 300

Query: 301 NKIIDESEWNIIERKMCKLWKVVKDGLVLPM---------------FMMLPHDIMLKIME 323
               DE   + I R++   W++VKD LV+P+                M LP ++ LKI+E
Sbjct: 301 ----DEEGSSSIYREVFMFWRMVKDRLVIPLLIGICDKAGLEPPPCLMRLPTELKLKILE 360

[Close]

BLAST of Sed0016990 vs. TAIR 10
Match: AT1G23770.1 (F-box family protein )

HSP 1 Score: 100.5 bits (249), Expect = 3.4e-21
Identity = 85/283 (30.04%), Postives = 137/283 (48.41%), Query Frame = 0


Query: 79  NRTIKQPQSIDLDLAKLKLENL-EPFGVVPENCPNSILLSRVMKEKLGGGRNAHKLLVIA 138
           N  I+ P  +D++LA  K + L EPF            L  V+ EK  G  +    L ++
Sbjct: 22  NSGIEGPVPMDVELAAAKSKRLSEPF-----------FLKNVLLEK-SGDTSDLTALALS 81

Query: 139 VHAVLLDSGLLLIDRLDMAEDWSSP-FSVTVQYTF------REPNTMKEVSI-------- 198
           VHAV+L+SG +L+D       +S    SV+++YT       ++ NT++ V++        
Sbjct: 82  VHAVMLESGFVLLDHGSDKFSFSKKLLSVSLRYTLPELITRKDTNTVESVTVRFQNIGPR 141

Query: 199 ---------NCSRGSNVYRVTLDTRTFAPNLDSIWVNSMSSNKIIDESEWNIIERKMCKL 258
                    +C R   V+  +LD   F P +D + V+++   K    S +    R++  L
Sbjct: 142 LVVYGTLGGSCKR---VHMTSLDKSRFLPVIDLV-VDTLKFEKQGSSSYY----REVFML 201

Query: 259 WKVVKDGLVLPM---------------FMMLPHDIMLKIMESLSGVDIGKLQCVCTELCD 318
           W++VKD LV+P+                M+LP ++ LKI+E L GV IG + CVCTE+  
Sbjct: 202 WRMVKDELVIPLLIGLCDKAGLESPPCLMLLPTELKLKILELLPGVSIGYMACVCTEMRY 261

[Close]

BLAST of Sed0016990 vs. TAIR 10
Match: AT1G70360.1 (F-box family protein )

HSP 1 Score: 74.3 bits (181), Expect = 2.6e-13
Identity = 54/169 (31.95%), Postives = 90/169 (53.25%), Query Frame = 0


Query: 133 LLVIAVHAVLLDSGLLLID-RLDMAEDWSSPFSVTVQYTFREPNTMKEVSINCSR----G 192
           ++++ VHAV+L+SG +L D    M   +S    V++ YT   P+    V +N  +    G
Sbjct: 12  IVIMTVHAVMLESGFVLFDPDSSMRFSFSKKTLVSLNYTL--PSVKGIVGLNFEKEAIVG 71

Query: 193 SNVYRVTLDTRTFAPNLDSIWVNSMSSNKIIDESEWNIIERKMCKLWKVVKDGLVLPM-- 252
           S V  V++D R++   +D +    M + K  +E +   I+ K+   W+++KDG+V P+  
Sbjct: 72  SFVRVVSIDKRSYVHIVDLL----METLKSDEEEDTLSIDCKVLVWWRMIKDGIVTPLLV 131

Query: 253 -------------FMMLPHDIMLKIMESLSGVDIGKLQCVCTELCDLGN 282
                        F+ LP ++  KI+ESL GVDIG L CV +EL D+ +
Sbjct: 132 DLCYKTGLELPPCFISLPRELKHKILESLPGVDIGTLACVSSELRDMAS 174

The following BLAST results are available for this feature:

BLAST of Sed0016990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454420.1	2.7e-65	41.30	PREDICTED: F-box protein SKIP22-like [Cucumis melo] >ADN33816.1 F-box family pro...	[more]
KAA0044316.1	1.8e-64	40.87	F-box protein SKIP22-like [Cucumis melo var. makuwa]	[more]
XP_038905379.1	4.0e-64	44.10	F-box protein SKIP22-like [Benincasa hispida]	[more]
XP_004150266.1	4.4e-63	41.90	F-box protein SKIP22 [Cucumis sativus] >KGN52738.1 hypothetical protein Csa_0146...	[more]
XP_022149297.1	2.8e-62	41.45	F-box protein SKIP22-like [Momordica charantia]	[more]

BLAST of Sed0016990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZUB8	1.4e-27	28.17	F-box protein SKIP22 OS=Arabidopsis thaliana OX=3702 GN=SKIP22 PE=1 SV=1	[more]
Q9ZUB9	4.8e-20	30.04	Putative F-box protein At1g23770 OS=Arabidopsis thaliana OX=3702 GN=At1g23770 PE...	[more]
O64600	3.7e-12	31.95	F-box protein At1g70360 OS=Arabidopsis thaliana OX=3702 GN=At1g70360 PE=2 SV=1	[more]

BLAST of Sed0016990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E231	1.3e-65	41.30	F-box protein SKIP22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
E5GBH4	1.3e-65	41.30	F-box family protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3BZC5	1.3e-65	41.30	F-box protein SKIP22-like OS=Cucumis melo OX=3656 GN=LOC103494830 PE=4 SV=1	[more]
A0A5A7TQD4	8.6e-65	40.87	F-box protein SKIP22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A0A0KT22	2.1e-63	41.90	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G000590 PE=4 ...	[more]

BLAST of Sed0016990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23780.1	9.8e-29	28.17	F-box family protein	[more]
AT1G23770.1	3.4e-21	30.04	F-box family protein	[more]
AT1G70360.1	2.6e-13	31.95	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 249..289 e-value: 1.4E-5 score: 34.5
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 248..289 e-value: 3.9E-5 score: 23.4
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 243..289 score: 9.603447
None	No IPR available	GENE3D	3.40.1000.30		coord: 113..262 e-value: 2.6E-11 score: 45.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 406..426
None	No IPR available	PANTHER	PTHR47602	F-BOX PROTEIN SKIP22	coord: 3..317
None	No IPR available	PANTHER	PTHR47602:SF2	F-BOX PROTEIN SKIP22	coord: 3..317
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 237..314

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016990.1	Sed0016990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding