Sed0016760 (gene) Chayote v1

Overview


Name	Sed0016760
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DEAD-box ATP-dependent RNA helicase
Location	LG10: 34552664 .. 34562230 (-)
RNA-Seq Expression	Sed0016760
Synteny	Sed0016760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACTTCCTAAGAACATACGTGAGGCGAGATTTCGCCTACTCTCCTCTCCTCAATCCCAAATCCCAAACACCCCCTCGGAGATAGGAGATCAATGAGGCAGCTTAAACCCTCTATTTCTGCACCCCATTTCACCGATTCATAAAATCGAAAACGCCATGGGAGGCACAGGAAGAACTCTCCTCTCACTTTCCATCTCCACAAATCTCCTTATCAGTTCTCGTCTTTCACCTCCCAAATGTCTCCCACTCTTCAAAATCCCAAAACCCATCACAAATTTCTCACGATTCAGGCCGCTTTGCTCCGCCACCGCCGTTGCAACCACCTCGGAATCCATGGAAACAACCCAGGCGACTGAACCCTTGAAGCATTCTCCTCTGCTTGACAGGCTCAGAGCCAGGCACCTCAAAGAATCTGCTTCTACAACTAAGTTAACGAGGAATAGGGCGTTACAGTCTGTGGATGAAGCGAAGAAGGTAGATAAGCAGAGGAAGAAGTTGGTTGAGAGTTTTGAGGAATTGGGTTTGACTGAGGAGGTGATGGGGGCTGTTAGGGAGATGGGGATTGAGGTTCCTACTGAGATTCAGTGTATTGGAATCCCTGCTGTTTTGGATGGAACCAGTGTGATTTTGGGTTCTCACACTGGGTCTGGTAAAACCCTGGCTTATTTGCTACCCCTTGTTCAGGTACTTTTGGGTTTTCTAATTCAACAGTTTGTTGTGGGGGTTTCTTAAATTTGTTGTAGATTGAATTGTCTTTTAATATGTTACTTGGGTTTAGTTCTAACTAGCGAAAGTATTGTAACCTTGACATATTGTTGAAGTGAAAAAGGAAGTTCTAATATTTGAAGTTTTGTTATGATTATTATGATCTGTTTTGCAGCTGTACAATGTTCTAGGGAGGAGGATATTTTTTAGAAATTACCTCATTCATGGATTTTTGGTTCCCTTTTGAACTTAGGTTGTGTTTGTTTTTGGTAGAAGAAGAGGGGTAAACAATCACTCTTCTAGAACCCCTTGTTTGTATTTGGCGGTAAACAAGAAACAACTGTCCTGAAGCTCTATCAAACCCCACATCAAACAATACATCAACCTTGTTATCCAACCACTACTAACACGAATCCCCAAACTAATAATTAATTATCCAACCACTCCTAACACCAATCCCCAAACAAGTAGTTAATTACCCAACCTCTACTAACACTAATCCCCAAACGACGCTAATTCAACCACGGGTAACAACAATTCCTAAACGAGTAGTTAATTAGTCCAACTACCATTAACCCTTCCACTCCCCTCGACTCCACTCTTTTCTATCAAATCCAAACACACCCTTAATGGATTGCCTGATTCCACATTGAAGAAAATTGCAACAATCTTTTTTTATTTTTTTTCTTTTTTTTGTTTGTGTTGTTGATATTCGCACTGGACTATTGATGAGGAAGTTTATATATCGATTACTCTTTGTTCTTTTATGGTTTATCAGTTAATGACTTAAGTTATACTTGCCATATCTGATTTGTTGATTTGAAGTTGCTGAGGCGGGATGAAGAAATGTTTGGCAAGTTAATGAAGCCTAGGCGTCCTCGAGCTGTTGTGCTATGTCCCACGAGGGAACTATCTGAACAGGTAGCCTTAGGATGACTTGTTTTTATTACGACTATTATGACGTACTTTATGTTGTAACTGATTAAGATCAAATTATCTCAATAGGTATTTCGTGTGTCGAAATCTATCAGTCATCATGCACGTTTCAGGTCTACCATGGTAAGTGGTGGTGGTAGGATAAGGCCACAAGAAGACTCATTAAGTAATCCAATAGACATGGTGGTGGGGACTCCTGGCAGAGTTCTTCAACATATTGAGGCAGGAAACATGGTGTATGGCGACATCAAATACCTGGTGCGGACCTTAAAATATGGTGTTGATTTTTTTTTAAAAAAAAAAGTGTTGTGACATTATTGTGCAGTCCACATGTTGCATTACTTTTGTAATGTCTGCTTTGCTGTGTATATTATCACCTTCATGATTGTGATAACATTTTACTAGGTTCTGGATGAGGCAGACACCATGTTCGATCATGGATTTGGACCTGACATTCGCAAGTTTATTAGCCCACTAAATCATCGTGCCTCATCACATGATGACCAAGGATTTCAAACTATATTGGTCACTGCAACGATGACAAAGGTATATTTAGTTGTTATTGTGAAGTCAAGTCATACATTTCAATGTGATAGAAGTATTTTGTTTTTATAGTTGAGAGTAGTTTTTTCTTCAAATAAATAATCAATATGCATTTGATAATTAGATGTTAGTAAATCTCAACCCAGGCATGTGGAACCAGATGGAACCCTTCTTTGTAATTGTTTTGGTAGAAGGGTATTAAATGTTCTTTGAATCCTCATATTATCGTTTCTTGTTCTTTGAATCCTTTTGACAATATGTTTTATATGTGAGACCAGTTTCCTTTTCTAGTCAACATATTCCGTTTGACAATATGTTGATTTGTGCAAGTGTGGTTGGTCAATCAGAATAGTTTAATCTTATGATTATTCCCCTCAAAATGTATGCGCTCCACTCCACTTGAACTTGAAGAACATAGATATGTTTTTATGGTTGGAGCGGTTTGGCTTTGAATTTGTTTGATCTTTGAACTACTTTTGTTCTTTAAAGAGTGTTCGATTCTCAAGAGTTTGAAGAGTCTTCTACTTTCTAAATTCTCTCTAATTTTTCTTTTCTAGAGTTTCTGACTTCTGTCAACTCTCATGGGCATGTGGGCTTTGGCTTGAATGATTTTTGGGTCCAACCACAGAACTTGGGTCTTATTGTCTTTGAGCTCTCTATTTGGATTGAGTCTTGTTTTTCTGACTCAAATTCCACACAACCCAACTTTGTCCCAAATTAATTTGTGATTGGCTCAAAGGTTTTTAAACCTTTTTTCATTAGTTTAGAATTAATGGCATGACAATTTGTTATTTGCCGAAATTCATCGGTCGACGGTCACTTCGATTTTAAAAAAGTCACTTTGATTCGATTTTCATATTCTGCATTTCTTCTTTCAGTAAACATTTTGGGAATTAAAATTCTCCTGCTCATATGGTCTGGTCATTGCAGGCAGTTCAAAAGCTGATTGATGAGGAGTTCCAAGGCATTGTGCATTTACGCACATCATCCTTGCATAAAAAGATTGCATCTGCTCGGCATGATTTCATCAAACTTTCAGGTGGTGAAAACAAGCTGGAAGCATTATTGCAGGTCTGAATATCAACTTGTTCATTGGATGCACGGATACATATTAGCCTGTGTCTTTAGACCATAATCTCCTTATTTCCATGTAGTTCTAGTCCACGATTTTGTTGTTCGCATGTGAACTGAGATACATTGTTCTTATAATTTAAATGTATGCCCTCTCACGTGGTCCTAAGCCTGGGTTGAGTTCTATAACAAGTAGTTATCGTGTTTAGGCACCATAGTTGAGGTTGAACCCTAAAGAGTCTGCCATCGATAGCTAGAGGATGGTGAATATGATGTTTGGTATGCCTGGACAAAGGATAGTTGGATTGTTTCAAGAGGCAGAGTAGAAAATTTGCAAAGATCTTGTGAGAACCCAAAAATAAGGGAAGAGAGTAAAAAAGGGTCTTATGGTCTCCGTTAGGCTTTTTGGGACCGTGGAGGTATTTTGGGAACTTGTAATTAGTTTAAAAGGGTGGCAAGGGCAAGAAGGAAGGGGAAAATGATTTTGTGGTTAAGTCTGAGGACTTTTGGGAGAGAACTGTTGCTCTCGAATCACTGGATAACGCTCCGTTTGTATTTCATCTTACTTGTTCACGTTATTGAAGAAGTTAAGAACTATTTTTGTTGGATGTTGAGTGAATTATCCTTGTTTGCAGTCATTTCTTTTCCATTTGTGGTTTGTTCTTTGTTTCCTAAATTGTCTGTAGAAGAAGAAAGGTACCCTTTACAGATTCACTCCTGATCTGACCACTTCCTCATTTAACTCCATGCTAGTGGCTACGATTTGGATCCTCTATATTTTGTTTTCAAAACATGTAGGTCAATCATAGATTCTTAACTCTTTTTCTTTTTTCTTTCGAAACAGAGATAAAACTTTTCATTAAGGGAATGAAAAGAGACAAGAGGCTAATACTAAAAATACAAACACAAGCTAGTGAAATTAAGCAAACGGTAGAAGAAAGCTGGTGTATGTAGGGAAATGAAGAGCATGTGGGGGCAATTCTTGATTAATTAGTTATTTCTCTTGAATCTCTATAAATAGATAGCACCTTCTCATATATTCTTCACACTTTCATTCTTTTTTTCCCAATTTCATTCTTAGTAAGATCTTGATAGATTCTTGGAAAACTTTCTCCTTTAAGTTCGTTAGGCTGGCTATATCATCTTTCCACAAACCTGGAAAGGTTTTGAAATTTAACACCTGGAACTGGAACCCACGACCTTGCAAGGTTTGAAATTTAACATCTGGAACCGAATTTGTGCATCCATGAGTTTCGCCTTTTTTTCACATTTGATATAAAATCAAAGATGAGTTTCACCTTTTCTATTTCCTGGTGAAAAATTTCACTGTCACCTCAAGTAAGTCACCCTCTTGAGTTTGTGAGAAGTAATCCGTATAAGATTGATTCTTCAACTATCTTTGCATTGCCAATTGTCCTTTGACATCAGTGTCAGTATTTTCAAATTCCTCCAGCCCCATTGTTCTTTCGATAGTTTCCTATGTACTATGGTTACCAGAAGCAGAAAATTACTTTTTCAGGTTGAAAGTTATTCTTGGTTCTATGTTTTTCAGTCAAGAAGGAACTAGGTTAGGGCTAGTAATTCAAGCATCGAATACTATTGTATCTATAGGACTTATTCTTTAAAGTAATGTGTTAGGATTGGGCCTTATAGAAAATAGGATTATCCTAGGGGTATATGATTAAAATAGTTAGAAATTTTGTCAGGGATTTTAGTTATAAATAGAGAGGTTGGGGGAAAGTATCCATATTTTGGATAATTACATTTGGGCTCAAGAGATATTTCTCTAAAGAGAGGGAGGTTCCAAGTCCTATCAAATACTTGGTTAGTTTGTATTCCTTTTATCCTTTTTTGGATAGAAAACAATTTCATTCATCATGAAATTACAATATAGATATATAGTACTGATGATCATATAAGAGATCTCCAGCAGTTAAGTAATTATTCAAAACTATATGAATAAAAAAGAGAGTTTATTTTACACTAGGATATAACATGATAAGTGATGGTGTCAAAAAACGGTGGTATGAAGTTGATTTGTCTTGAAAGATCCTCTTGTTACGCTCCAACCACAAGTTCCAGCAAAATGCTCTTATAAAATGCTCCCATAAGAGTTTCTTCTCCCTTTTAAATGGGTGGGAAGCTTGGATCAATTGTTTCTTCTCCTTTTATTCCTTTTATCCTTTATTTTTCTTTAGTACGTTATTCTACATCTTGGATCCTACTGTAATAAATAACTGAGAAAAAGACAGCTAAACCTCCACAATTGATAAATAAAGAACCAACCATCTAAATCACTCTCAACAAAATGCATGAACCCAACAGCTTGATGTTTTGAAGCATCACATTATTATCTGCTTGAATTATTATTGTATTGTTTGGATGCAGGTTCTTGAACCAAGTTTGGCGAAAGGGAATAGAGTAATGGTGTTCTGTAACACTTTAAATTCCAGCCGTGCTGTGGATCATTTTCTAAGTGAAAATCAAATTTCGACAGTCAATTACCACGGAGAGGTGCCCGCCCAGAAGAGGTAATGAATTTCCATGACGAACTCCTTTGCAATATTATAAATTTTACGCTAGTGAGTGGCAATAGTTTCTAGCTGTTTCTCCTACGTTGTTTGATACGGTCTTCATATGGTGTACTAGATTCTTGTTTTTTTTTAAGAAAACAATTTTTTGTTAGAATGGAAAATTAAAACTAAAGCTCCGTTTGATAATCATTTGGTTTTTGTTTGTTTGTTTTTGAAATTTAAGCTTGTTTTCCTAAGTATTTGAATCCTAAAAGCCAAAAGAAGTTTTTCAAGTTGTTAGGCCCGCTTGATAACTATTTCGTTTTTTTTTTTTTCTAGTTTTTCATTTTTGGTTTTTGATTTTTTGTTTTAAAAAATAAAAATTGTATATGTTTGATAACTGATTTTAGTTTATGTTTTTAAAAATTAAAAACCAAAAAACATGTTTGATAACTATTTTTTGTTTTCAAACTCAAATTTTGTTTTGATTTTTTAAAATTTTTACTCTTTATTCTTGATTCTTTCCTGCTTTTTTAAAAACAAAAACAAAAACCTGTTTTTAAAAGGTACTTTTTTTAGTTTTTAGAATTCCTTTAATATTTTTAAAATGTTTTAAAATTTTAAAAACAAAAACCAAACTTGGTTATCAAATAAATCTATTTTTAAAAAGTTAAAATAGAAAACAAAAAACAAAAAACGAAATGGTTATCAAATGGGAACTTAGTTTTCAAATTTTGATTTGGTTTAAAAATAAAAGTAAAGAAAGTAGAAAACCATAGATGAAGTTGTTGTAAGCTTATTTTCAAAAACAAAATAGTTATCAAACGAGGTTTATAATTCTGGCATATGTGTTCATTTTTCATTGGTTTTATAGGGCTCGTTTGATAACGTTTCCGTTTCCTGTTTCTCATTCCTGTTTCTTATTTATTGAGAAACAGTCTTGTTTGATAACTGTTCCCGTTTCTTGTTCCCAAAAATACAAGAAACGTTTATCAAATTATGTGAAAAAATGAGAAACTCTCCAAACTTGTTTCTCCTGTTCCGTTCTCTTTTTTCCCTTCTTCTGAAACCCAGTACTGTTTTAGTTTTATATTACGCGTTTCAAAAATTTAATAATATTTGCATGTGGTGTGATGGTTGTGTTGTCAACTTTTTTTTCCAGAATTTGACTCAAGTCCATGGTTCAAATCCCAACTTTGTATTTTTTTTTTCAAATCATTTTTGCAATATTTATATTTTGCAATTTTTAATTCTTTTACTTTCGTATGTTTATTTACCATTTTATTTTTTAGTTTTAAATTTTTTAATCTTTTATTGTTTAAATTTTAAATGGAATTTTTATTTATAATTTATGGGTTGATTTGAAATTTTTTTATATGTGTATTTATTTATTATTTAAGTTAATAATACACTCGGAATCCGTAAAATATTTGTTCACTAAAATATACAACTGACATTACCTTAATATTTTACAATCACAACATTTTTTAAGCACGTCATTTGTGACAAATGATTTATGTGAGAGATAACATATTAAATTTATGGTTAGTTCTATATTAAGATTCTTTTTTTTTTAATTATAAAAGATTTAATTATACTAGAAAATGTAAACTTTCGATGGTCATATTTTAATGCATGTTAAATTTTGTTAGAAGCCTAAATATATACATACATATACATATATATACATACATATACATATAAACAAAAAGCAAGAAATAAGAAACAAGAAACAAGAAATAGTTATCAAACAAGTTTGTTTCTGTTTTTTATATCTTTTAAGAAACAAAAATCAGAAACGGTTATCAGACATATTATTGTTTTTTATTCTCAAAAAATAAGAAACAAGGAACTAGAAACAAAAACTAAAAAACAAGAAACAGAAACGTTATCAAACGAGTCCATAATGTCGTATAACTTTAGACATACTGCTTATTGAAAATCAGGGTCGAAAATCTCAAGAAGTTCAAGAGCGATGATGCTGATTGTCCTACATTAGTTTGCACAGACTTGGCTGCTAGGGGACTGGACTTGGATGTGGATCATGTCATCATGTTTGATTTCCCTTTGAACTCTGTAAGGGTTATTGTCTTTTGATCAATTTGGCCAGCTTATTTCCACCACCATTTTTTGTGAGTGCACTTTTCAATTTTTCTGCTAAGGTAGCTAATAAATGATAATTCGTTTTGCCTTTTAGATCGACTACCTTCATCGCACTGGAAGAACTGCTCGTATGGGTGCAAAAGGTTTGTTATTATTTCATATGGACTCTATGCTGTCCGTTTGTTAGGTAACCAAGGAGGAAACTAGATGAGCCAAGTATTTTCATGGCGGATCCGCCTTTCGTCGCTTATGGCGAGAGGAGAGGTGATGTGCAGAGGTGGAATTGTGCTTCTAAAGAAGTCGAGGCGAGCGTCTTAAATCAGGCGTGCTCGCCTTTCTTCACCATTTTGTGATAGCCATCACTTTCACCTCCTTGTTTTTCTTCTTTTTGAATTTTATTTTATATTTGAATGATGATTTTTTTTGAAACAAGGGTAACCATGCAAGTCTCTAGGCCAAGTACCGTATTTGAATGATGAATTATTTTAAACTTTTTAGCCTACAAAATTATTTTAGAAGTATTTTTTTGTATACTTTTTTGAAGATTCAAACTTTTATTTTTAAATCATGTTTTTCTCTGTTATTTGAATTCTATTTTCTATTTCATTTTTGCTATCTATATATTATTTATTATTTAGTTCTGCATTTATTTATTTACGTATTCTCTTACCTTGAGGCGATTTAGGGGAATGTTGCCTTGCACTTTGAAAACATAGATGGCCTAACCACTAAACCGTTATTTCTTTTAACTTCTGTGCTTGTGCAATGTCATTATGTTTCCTTCTTGGATTGGTAGAGAGAGAATGCCATAAATGTTCTTTTTCTTGTTTCCTTTCCTTTCTTTTTGATGGATCAGCCACCTGAATTTCCTTGCTGATCCTTTATTATTCCCACATCTGTATGTAGGAAAGGTGACAAGTCTGGTCGCCAAAAAGGATGATGTCTTGGCCACTCGCATTGAAGAAGCGATCCGAAAAAACGAGAGCTTGGAATCTCTCACTACAGATAACGTGCGAAGAGACAATGCTCGGGATAATATAACTAGGCAGAAAACGAAAAATGAAAAATTGGTCAAGGTTTCAAGCGAGAGAAGGAGAATGCAATCACAGTCATCAGTAGTAGCAACAACAAGAAGTTCTTCAACAACAAAATCTTCAAGTGTTCATTCCAAGAGTCCATCTGGTAAACCATCATCTCCAGCAAAGACTCGGAAGCCTGCTGTTCGGGTTTCTAAGCCAGTTAAGACGTTGAAAACCATCCCGCAAAAGCCATCTTCTGAGTTGAAGAAGCCAATGACCAACAGAAGGCGGCCTGGGAGCGCCATCAAATCCCCGGGTCAGAAATTAAATGTTGTTGGATTCAGAGGGCGGAGCAGCAGCAGCCAGTCTGATAAGAGACAATCAGTATCCAGATAAGTGAAAGTCTGGTTTTAGATTAGAATTCATAATATAATTATACTAAACTTCTCTGGTAATTTTTTGTTTTGGTTCTTCATTGTGAAATATCTTGATGAGTGAAAATCAGTTTCAATCTTACCAAGTGTTTATTTTCAATCAATCAATTTTCATGAAAATGTAATTTTGTTGTTTTAAGTGTATTTATGTAGGGGCTTTTGCCAGAATAGCAAAAATGAACAAATAAATGTCAAATTTTGAAAGTATTGGTAGAAATGGTAAAAAAGATGGACATTGTAAAA

mRNA sequence

CAACTTCCTAAGAACATACGTGAGGCGAGATTTCGCCTACTCTCCTCTCCTCAATCCCAAATCCCAAACACCCCCTCGGAGATAGGAGATCAATGAGGCAGCTTAAACCCTCTATTTCTGCACCCCATTTCACCGATTCATAAAATCGAAAACGCCATGGGAGGCACAGGAAGAACTCTCCTCTCACTTTCCATCTCCACAAATCTCCTTATCAGTTCTCGTCTTTCACCTCCCAAATGTCTCCCACTCTTCAAAATCCCAAAACCCATCACAAATTTCTCACGATTCAGGCCGCTTTGCTCCGCCACCGCCGTTGCAACCACCTCGGAATCCATGGAAACAACCCAGGCGACTGAACCCTTGAAGCATTCTCCTCTGCTTGACAGGCTCAGAGCCAGGCACCTCAAAGAATCTGCTTCTACAACTAAGTTAACGAGGAATAGGGCGTTACAGTCTGTGGATGAAGCGAAGAAGGTAGATAAGCAGAGGAAGAAGTTGGTTGAGAGTTTTGAGGAATTGGGTTTGACTGAGGAGGTGATGGGGGCTGTTAGGGAGATGGGGATTGAGGTTCCTACTGAGATTCAGTGTATTGGAATCCCTGCTGTTTTGGATGGAACCAGTGTGATTTTGGGTTCTCACACTGGGTCTGGTAAAACCCTGGCTTATTTGCTACCCCTTGTTCAGTTGCTGAGGCGGGATGAAGAAATGTTTGGCAAGTTAATGAAGCCTAGGCGTCCTCGAGCTGTTGTGCTATGTCCCACGAGGGAACTATCTGAACAGGTATTTCGTGTGTCGAAATCTATCAGTCATCATGCACGTTTCAGGTCTACCATGGTAAGTGGTGGTGGTAGGATAAGGCCACAAGAAGACTCATTAAGTAATCCAATAGACATGGTGGTGGGGACTCCTGGCAGAGTTCTTCAACATATTGAGGCAGGAAACATGGTGTATGGCGACATCAAATACCTGGTTCTGGATGAGGCAGACACCATGTTCGATCATGGATTTGGACCTGACATTCGCAAGTTTATTAGCCCACTAAATCATCGTGCCTCATCACATGATGACCAAGGATTTCAAACTATATTGGTCACTGCAACGATGACAAAGGCAGTTCAAAAGCTGATTGATGAGGAGTTCCAAGGCATTGTGCATTTACGCACATCATCCTTGCATAAAAAGATTGCATCTGCTCGGCATGATTTCATCAAACTTTCAGGTGGTGAAAACAAGCTGGAAGCATTATTGCAGGTTCTTGAACCAAGTTTGGCGAAAGGGAATAGAGTAATGGTGTTCTGTAACACTTTAAATTCCAGCCGTGCTGTGGATCATTTTCTAAGTGAAAATCAAATTTCGACAGTCAATTACCACGGAGAGGTGCCCGCCCAGAAGAGGGTCGAAAATCTCAAGAAGTTCAAGAGCGATGATGCTGATTGTCCTACATTAGTTTGCACAGACTTGGCTGCTAGGGGACTGGACTTGGATGTGGATCATGTCATCATGTTTGATTTCCCTTTGAACTCTATCGACTACCTTCATCGCACTGGAAGAACTGCTCGTATGGGTGCAAAAGGAAAGGTGACAAGTCTGGTCGCCAAAAAGGATGATGTCTTGGCCACTCGCATTGAAGAAGCGATCCGAAAAAACGAGAGCTTGGAATCTCTCACTACAGATAACGTGCGAAGAGACAATGCTCGGGATAATATAACTAGGCAGAAAACGAAAAATGAAAAATTGGTCAAGGTTTCAAGCGAGAGAAGGAGAATGCAATCACAGTCATCAGTAGTAGCAACAACAAGAAGTTCTTCAACAACAAAATCTTCAAGTGTTCATTCCAAGAGTCCATCTGGTAAACCATCATCTCCAGCAAAGACTCGGAAGCCTGCTGTTCGGGTTTCTAAGCCAGTTAAGACGTTGAAAACCATCCCGCAAAAGCCATCTTCTGAGTTGAAGAAGCCAATGACCAACAGAAGGCGGCCTGGGAGCGCCATCAAATCCCCGGGTCAGAAATTAAATGTTGTTGGATTCAGAGGGCGGAGCAGCAGCAGCCAGTCTGATAAGAGACAATCAGTATCCAGATAAGTGAAAGTCTGGTTTTAGATTAGAATTCATAATATAATTATACTAAACTTCTCTGGTAATTTTTTGTTTTGGTTCTTCATTGTGAAATATCTTGATGAGTGAAAATCAGTTTCAATCTTACCAAGTGTTTATTTTCAATCAATCAATTTTCATGAAAATGTAATTTTGTTGTTTTAAGTGTATTTATGTAGGGGCTTTTGCCAGAATAGCAAAAATGAACAAATAAATGTCAAATTTTGAAAGTATTGGTAGAAATGGTAAAAAAGATGGACATTGTAAAA

Coding sequence (CDS)

ATGGGAGGCACAGGAAGAACTCTCCTCTCACTTTCCATCTCCACAAATCTCCTTATCAGTTCTCGTCTTTCACCTCCCAAATGTCTCCCACTCTTCAAAATCCCAAAACCCATCACAAATTTCTCACGATTCAGGCCGCTTTGCTCCGCCACCGCCGTTGCAACCACCTCGGAATCCATGGAAACAACCCAGGCGACTGAACCCTTGAAGCATTCTCCTCTGCTTGACAGGCTCAGAGCCAGGCACCTCAAAGAATCTGCTTCTACAACTAAGTTAACGAGGAATAGGGCGTTACAGTCTGTGGATGAAGCGAAGAAGGTAGATAAGCAGAGGAAGAAGTTGGTTGAGAGTTTTGAGGAATTGGGTTTGACTGAGGAGGTGATGGGGGCTGTTAGGGAGATGGGGATTGAGGTTCCTACTGAGATTCAGTGTATTGGAATCCCTGCTGTTTTGGATGGAACCAGTGTGATTTTGGGTTCTCACACTGGGTCTGGTAAAACCCTGGCTTATTTGCTACCCCTTGTTCAGTTGCTGAGGCGGGATGAAGAAATGTTTGGCAAGTTAATGAAGCCTAGGCGTCCTCGAGCTGTTGTGCTATGTCCCACGAGGGAACTATCTGAACAGGTATTTCGTGTGTCGAAATCTATCAGTCATCATGCACGTTTCAGGTCTACCATGGTAAGTGGTGGTGGTAGGATAAGGCCACAAGAAGACTCATTAAGTAATCCAATAGACATGGTGGTGGGGACTCCTGGCAGAGTTCTTCAACATATTGAGGCAGGAAACATGGTGTATGGCGACATCAAATACCTGGTTCTGGATGAGGCAGACACCATGTTCGATCATGGATTTGGACCTGACATTCGCAAGTTTATTAGCCCACTAAATCATCGTGCCTCATCACATGATGACCAAGGATTTCAAACTATATTGGTCACTGCAACGATGACAAAGGCAGTTCAAAAGCTGATTGATGAGGAGTTCCAAGGCATTGTGCATTTACGCACATCATCCTTGCATAAAAAGATTGCATCTGCTCGGCATGATTTCATCAAACTTTCAGGTGGTGAAAACAAGCTGGAAGCATTATTGCAGGTTCTTGAACCAAGTTTGGCGAAAGGGAATAGAGTAATGGTGTTCTGTAACACTTTAAATTCCAGCCGTGCTGTGGATCATTTTCTAAGTGAAAATCAAATTTCGACAGTCAATTACCACGGAGAGGTGCCCGCCCAGAAGAGGGTCGAAAATCTCAAGAAGTTCAAGAGCGATGATGCTGATTGTCCTACATTAGTTTGCACAGACTTGGCTGCTAGGGGACTGGACTTGGATGTGGATCATGTCATCATGTTTGATTTCCCTTTGAACTCTATCGACTACCTTCATCGCACTGGAAGAACTGCTCGTATGGGTGCAAAAGGAAAGGTGACAAGTCTGGTCGCCAAAAAGGATGATGTCTTGGCCACTCGCATTGAAGAAGCGATCCGAAAAAACGAGAGCTTGGAATCTCTCACTACAGATAACGTGCGAAGAGACAATGCTCGGGATAATATAACTAGGCAGAAAACGAAAAATGAAAAATTGGTCAAGGTTTCAAGCGAGAGAAGGAGAATGCAATCACAGTCATCAGTAGTAGCAACAACAAGAAGTTCTTCAACAACAAAATCTTCAAGTGTTCATTCCAAGAGTCCATCTGGTAAACCATCATCTCCAGCAAAGACTCGGAAGCCTGCTGTTCGGGTTTCTAAGCCAGTTAAGACGTTGAAAACCATCCCGCAAAAGCCATCTTCTGAGTTGAAGAAGCCAATGACCAACAGAAGGCGGCCTGGGAGCGCCATCAAATCCCCGGGTCAGAAATTAAATGTTGTTGGATTCAGAGGGCGGAGCAGCAGCAGCCAGTCTGATAAGAGACAATCAGTATCCAGATAA

Protein sequence

MGGTGRTLLSLSISTNLLISSRLSPPKCLPLFKIPKPITNFSRFRPLCSATAVATTSESMETTQATEPLKHSPLLDRLRARHLKESASTTKLTRNRALQSVDEAKKVDKQRKKLVESFEELGLTEEVMGAVREMGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTLAYLLPLVQLLRRDEEMFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRIRPQEDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFISPLNHRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARHDFIKLSGGENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPAQKRVENLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDDVLATRIEEAIRKNESLESLTTDNVRRDNARDNITRQKTKNEKLVKVSSERRRMQSQSSVVATTRSSSTTKSSSVHSKSPSGKPSSPAKTRKPAVRVSKPVKTLKTIPQKPSSELKKPMTNRRRPGSAIKSPGQKLNVVGFRGRSSSSQSDKRQSVSR

Homology

[Close]

BLAST of Sed0016760 vs. NCBI nr
Match: XP_022143665.1 (DEAD-box ATP-dependent RNA helicase 39 [Momordica charantia])

HSP 1 Score: 997.7 bits (2578), Expect = 4.7e-287
Identity = 544/646 (84.21%), Postives = 578/646 (89.47%), Query Frame = 0


Query: 1   MGGTGRTLLSLSISTNLLISSRLSPPKCLPLFKIPKPITNFSRFRPLCSATAVATTSESM 60
           MGGTGRTLLSLSISTNLL+ SR+SPPKC PL KIPKP+  FS FRPLCSATA  T +ESM
Sbjct: 1   MGGTGRTLLSLSISTNLLLMSRVSPPKCFPLLKIPKPVRIFSGFRPLCSATADTTPTESM 60

Query: 61  ETTQATEPLKHSPLLDRLRARHLKESASTTKLTRNRALQSV----DEAKKVDKQRKK-LV 120
           ETTQ  EPLKHS LL+RLRARHLKESAS TK  R+    SV    DE  K +K++KK LV
Sbjct: 61  ETTQVIEPLKHSLLLERLRARHLKESASKTKQARSTLSPSVGGAEDEMNKAEKKKKKNLV 120

Query: 121 ESFEELGLTEEVMGAVREMGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTLAYLLPLV 180
           ESFEELGL EEVMGAVREMGIEVPTEIQCIGIPAVL+G SVILGSHTGSGKTLAYLLPLV
Sbjct: 121 ESFEELGLNEEVMGAVREMGIEVPTEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLV 180

Query: 181 QLLRRDEEMFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRIRP 240
           QLLRRDEE+FGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGR+RP
Sbjct: 181 QLLRRDEELFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRP 240

Query: 241 QEDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFISPL 300
           QEDSLSNPI+MVVGTPGRVLQHIEAGN+VYGDIKYLVLDEADTMFDHGFGPDIRKFISPL
Sbjct: 241 QEDSLSNPIEMVVGTPGRVLQHIEAGNIVYGDIKYLVLDEADTMFDHGFGPDIRKFISPL 300

Query: 301 NHRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARHDFIKLSG 360
            HRASSH+DQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTS+LHKKIASARHDFIKLSG
Sbjct: 301 KHRASSHEDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSG 360

Query: 361 GENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPAQKRVE 420
            ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPAQKRVE
Sbjct: 361 SENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQKRVE 420

Query: 421 NLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 480
           NLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV
Sbjct: 421 NLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 480

Query: 481 TSLVAKKDDVLATRIEEAIRKNESLESLTTDNVRRDNARDNITRQKTKNEKLVKVSSERR 540
           TSLVAKKD +LATRIEEAIRKNESLESLT DNVRRD ARD IT QKTK  KLV+VSSE+ 
Sbjct: 481 TSLVAKKDAILATRIEEAIRKNESLESLTADNVRRDIARDRITEQKTKTAKLVRVSSEKS 540

Query: 541 RMQSQSSVVATTRSSSTTKSSSVHSKSPSGKPSSPAKTRKPAVRVSKPVKTLKTIPQKPS 600
           + +S S       +++TTKSSS+ S+  SGK  SPAK++K AVRVSK V + +  P+KPS
Sbjct: 541 KAKSSS-------AAATTKSSSIRSQGSSGKAPSPAKSQKSAVRVSKSVDSSRNNPRKPS 600

Query: 601 SELKKPM-TNRRRPGSAIKSPGQKLNVVGFRGRSSSSQSDKRQSVS 641
           S  KKPM ++RRRPG AIKS G KLNVVGFRGR  S+QSDKRQSVS
Sbjct: 601 SGSKKPMASSRRRPGIAIKSTGPKLNVVGFRGR--SNQSDKRQSVS 637

[Close]

BLAST of Sed0016760 vs. NCBI nr
Match: TYK14098.1 (DEAD-box ATP-dependent RNA helicase 39 [Cucumis melo var. makuwa])

HSP 1 Score: 994.6 bits (2570), Expect = 4.0e-286
Identity = 538/645 (83.41%), Postives = 566/645 (87.75%), Query Frame = 0


Query: 1   MGGTGRTLLSLSISTNLLISSRLSPPKCLPLFKIPKPITNFSRFRPLCSATAVATTSESM 60
           MGGTGRTLLSLSISTNLLISSRLSPPKCLPL KIPKP  NFS FRPL SAT   T++ES 
Sbjct: 1   MGGTGRTLLSLSISTNLLISSRLSPPKCLPLLKIPKPFRNFSGFRPLSSATTATTSTEST 60

Query: 61  ETTQATEPLKHSPLLDRLRARHLKESASTTKLTRNRALQSV----DEAKKVDKQRKKLVE 120
           E  Q  EPLKHS LL+RLR RHLKESA  TK TRN   QSV    DE KK +K+ KKLVE
Sbjct: 61  EAIQVIEPLKHSQLLERLRTRHLKESAPKTKPTRNTLSQSVGSAEDEMKKSEKKNKKLVE 120

Query: 121 SFEELGLTEEVMGAVREMGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTLAYLLPLVQ 180
           SFEELGL EEVMGAVREMGI+VPTEIQCIGIPAVL+G SVILGSHTGSGKTLAYLLPLVQ
Sbjct: 121 SFEELGLNEEVMGAVREMGIQVPTEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQ 180

Query: 181 LLRRDEEMFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRIRPQ 240
           LLRRDEE+FGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGR+RPQ
Sbjct: 181 LLRRDEELFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQ 240

Query: 241 EDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFISPLN 300
           EDSLSNPIDMVVGTPGRVLQHI+AGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFI PL 
Sbjct: 241 EDSLSNPIDMVVGTPGRVLQHIQAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFIGPLK 300

Query: 301 HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARHDFIKLSGG 360
           HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTS+LHKKIASARHDFIKLSG 
Sbjct: 301 HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGS 360

Query: 361 ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPAQKRVEN 420
           ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPAQKRVEN
Sbjct: 361 ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQKRVEN 420

Query: 421 LKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 480
           LKKFKSDD DCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 421 LKKFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 480

Query: 481 SLVAKKDDVLATRIEEAIRKNESLESLTTDNVRRDNARDNITRQKTKNEKLVKVSSERRR 540
           SLV KKDD+LATRIEEAI+KNESLESLT D+VRRD ARD IT  KTKN KL+K S+  R 
Sbjct: 481 SLVGKKDDILATRIEEAIQKNESLESLTADSVRRDIARDRITEHKTKNAKLIKASTGSR- 540

Query: 541 MQSQSSVVATTRSSSTTKSSSVHSKSPSGKPSSPAKTRKPAVRVSKPVKTLKTIPQKPSS 600
                       ++S  KSSSVHSK  +GK S   +T+KP V VSK VK+ + IP+KPSS
Sbjct: 541 ---------AKSATSAPKSSSVHSKGETGKASYSERTQKPGVPVSKLVKSSRNIPRKPSS 600

Query: 601 ELKKPMTNRRRPGSAIKSPGQKLNVVGFRGRSSSSQSDKRQSVSR 642
           E KK + +RRRPGSAIKS GQKLNVVGFRGR  S+Q DKR+SVSR
Sbjct: 601 ETKKQVASRRRPGSAIKSSGQKLNVVGFRGR--SNQFDKRRSVSR 633

[Close]

BLAST of Sed0016760 vs. NCBI nr
Match: XP_008461901.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Cucumis melo])

HSP 1 Score: 993.0 bits (2566), Expect = 1.2e-285
Identity = 537/644 (83.39%), Postives = 565/644 (87.73%), Query Frame = 0


Query: 1   MGGTGRTLLSLSISTNLLISSRLSPPKCLPLFKIPKPITNFSRFRPLCSATAVATTSESM 60
           MGGTGRTLLSLSISTNLLISSRLSPPKCLPL KIPKP  NFS FRPL SAT   T++ES 
Sbjct: 1   MGGTGRTLLSLSISTNLLISSRLSPPKCLPLLKIPKPFRNFSGFRPLSSATTATTSTEST 60

Query: 61  ETTQATEPLKHSPLLDRLRARHLKESASTTKLTRNRALQSV----DEAKKVDKQRKKLVE 120
           E  Q  EPLKHS LL+RLR RHLKESA  TK TRN   QSV    DE KK +K+ KKLVE
Sbjct: 61  EAIQVIEPLKHSQLLERLRTRHLKESAPKTKPTRNTLSQSVGSAEDEMKKSEKKNKKLVE 120

Query: 121 SFEELGLTEEVMGAVREMGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTLAYLLPLVQ 180
           SFEELGL EEVMGAVREMGI+VPTEIQCIGIPAVL+G SVILGSHTGSGKTLAYLLPLVQ
Sbjct: 121 SFEELGLNEEVMGAVREMGIQVPTEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQ 180

Query: 181 LLRRDEEMFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRIRPQ 240
           LLRRDEE+FGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGR+RPQ
Sbjct: 181 LLRRDEELFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQ 240

Query: 241 EDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFISPLN 300
           EDSLSNPIDMVVGTPGRVLQHI+AGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFI PL 
Sbjct: 241 EDSLSNPIDMVVGTPGRVLQHIQAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFIGPLK 300

Query: 301 HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARHDFIKLSGG 360
           HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTS+LHKKIASARHDFIKLSG 
Sbjct: 301 HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGS 360

Query: 361 ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPAQKRVEN 420
           ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPAQKRVEN
Sbjct: 361 ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQKRVEN 420

Query: 421 LKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 480
           LKKFKSDD DCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 421 LKKFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 480

Query: 481 SLVAKKDDVLATRIEEAIRKNESLESLTTDNVRRDNARDNITRQKTKNEKLVKVSSERRR 540
           SLV KKDD+LATRIEEAI+KNESLESLT D+VRRD ARD IT  KTKN KL+K S+  R 
Sbjct: 481 SLVGKKDDILATRIEEAIQKNESLESLTADSVRRDIARDRITEHKTKNAKLIKASTGSR- 540

Query: 541 MQSQSSVVATTRSSSTTKSSSVHSKSPSGKPSSPAKTRKPAVRVSKPVKTLKTIPQKPSS 600
                       ++S  KSSSVHSK  +GK S   +T+KP V VSK VK+ + IP+KPSS
Sbjct: 541 ---------AKSATSAPKSSSVHSKGETGKASYSERTQKPGVPVSKLVKSSRNIPRKPSS 600

Query: 601 ELKKPMTNRRRPGSAIKSPGQKLNVVGFRGRSSSSQSDKRQSVS 641
           E KK + +RRRPGSAIKS GQKLNVVGFRGR  S+Q DKR+SVS
Sbjct: 601 ETKKQVASRRRPGSAIKSSGQKLNVVGFRGR--SNQFDKRRSVS 632

[Close]

BLAST of Sed0016760 vs. NCBI nr
Match: XP_004139692.1 (DEAD-box ATP-dependent RNA helicase 39 [Cucumis sativus] >XP_011659101.1 DEAD-box ATP-dependent RNA helicase 39 [Cucumis sativus] >KAE8646174.1 hypothetical protein Csa_016020 [Cucumis sativus])

HSP 1 Score: 991.1 bits (2561), Expect = 4.4e-285
Identity = 535/644 (83.07%), Postives = 568/644 (88.20%), Query Frame = 0


Query: 1   MGGTGRTLLSLSISTNLLISSRLSPPKCLPLFKIPKPITNFSRFRPLCSATAVATTSESM 60
           MGGTGRTLLSLS+STNLLISSRLSPPKCLPL KIPKP  NFS FRP+ SATA  T++ES 
Sbjct: 1   MGGTGRTLLSLSVSTNLLISSRLSPPKCLPLLKIPKPFRNFSGFRPISSATAATTSTEST 60

Query: 61  ETTQATEPLKHSPLLDRLRARHLKESASTTKLTRNRALQSV----DEAKKVDKQRKKLVE 120
           ET Q  EPLKHS LL+RLR RHLKESA  TK TRN   QSV    DE KK +K++KKL E
Sbjct: 61  ETIQVIEPLKHSQLLERLRTRHLKESAPKTKPTRNTLSQSVGSAEDEMKKSEKKKKKLDE 120

Query: 121 SFEELGLTEEVMGAVREMGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTLAYLLPLVQ 180
           SFEELGL EEVMGAVREMGI+VP+EIQCIGIPAVL+G SVILGSHTGSGKTLAYLLPLVQ
Sbjct: 121 SFEELGLNEEVMGAVREMGIQVPSEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQ 180

Query: 181 LLRRDEEMFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRIRPQ 240
           LLRRDEE+FG+LMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGR+RPQ
Sbjct: 181 LLRRDEELFGRLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQ 240

Query: 241 EDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFISPLN 300
           EDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFI PL 
Sbjct: 241 EDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFIGPLK 300

Query: 301 HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARHDFIKLSGG 360
           HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTS+LHKKIASARHDFIKLSG 
Sbjct: 301 HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGS 360

Query: 361 ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPAQKRVEN 420
           ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPAQKRVEN
Sbjct: 361 ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQKRVEN 420

Query: 421 LKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 480
           LKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 421 LKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 480

Query: 481 SLVAKKDDVLATRIEEAIRKNESLESLTTDNVRRDNARDNITRQKTKNEKLVKVSSERRR 540
           SLV KKD++LATRIEEAIRKNESLESLT D+V RD AR+ IT  KTKN KL+K S+ R  
Sbjct: 481 SLVGKKDNILATRIEEAIRKNESLESLTADSVWRDVARNRITEHKTKNAKLIKASTGRSG 540

Query: 541 MQSQSSVVATTRSSSTTKSSSVHSKSPSGKPSSPAKTRKPAVRVSKPVKTLKTIPQKPSS 600
            +S         ++S  KSSSVHSK   GK S   +TRKP V VSKPVK+ + IP+KPSS
Sbjct: 541 AKS---------ATSAPKSSSVHSKGEPGKASYSERTRKPGVSVSKPVKSSRNIPRKPSS 600

Query: 601 ELKKPMTNRRRPGSAIKSPGQKLNVVGFRGRSSSSQSDKRQSVS 641
           E KK + +R+RPGSAIKS GQKLNVVGFRGR  S+QS  R+SVS
Sbjct: 601 ETKKQVASRKRPGSAIKSSGQKLNVVGFRGR--SNQSGNRRSVS 633

[Close]

BLAST of Sed0016760 vs. NCBI nr
Match: XP_038898304.1 (DEAD-box ATP-dependent RNA helicase 39 [Benincasa hispida])

HSP 1 Score: 989.2 bits (2556), Expect = 1.7e-284
Identity = 539/640 (84.22%), Postives = 565/640 (88.28%), Query Frame = 0


Query: 1   MGGTGRTLLSLSISTNLLISSRLSPPKCLPLFKIPKPITNFSRFRPLCSATAVATTSESM 60
           MGGTGR LLSLSISTNLLISSRLSPPKCL L +IPKP  NFS FRPLCSAT   T++ES+
Sbjct: 1   MGGTGRALLSLSISTNLLISSRLSPPKCLSLLEIPKPFRNFSGFRPLCSATTATTSTESV 60

Query: 61  ETTQATEPLKHSPLLDRLRARHLKESASTTKLTRNRALQSVDEAKKVDKQRKKLVESFEE 120
           ET Q  EPLKHS LL+RLR RHLKESAS  K       ++ DE KK +K++KKLVE FEE
Sbjct: 61  ETAQVIEPLKHSQLLERLRTRHLKESAS--KTMPKSVGRAEDEMKKSEKKKKKLVERFEE 120

Query: 121 LGLTEEVMGAVREMGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTLAYLLPLVQLLRR 180
           LGL EEVMGAVREMGIEVPTEIQCIGIPAVL+  SVILGSHTGSGKTLAYLLPLVQLLRR
Sbjct: 121 LGLNEEVMGAVREMGIEVPTEIQCIGIPAVLEEKSVILGSHTGSGKTLAYLLPLVQLLRR 180

Query: 181 DEEMFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRIRPQEDSL 240
           DEE+FGKLM+PRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGR+RPQEDSL
Sbjct: 181 DEELFGKLMRPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQEDSL 240

Query: 241 SNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFISPLNHRAS 300
           SNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFI PL HRAS
Sbjct: 241 SNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFIGPLKHRAS 300

Query: 301 SHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARHDFIKLSGGENKL 360
           SHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARHDFIKLSG ENKL
Sbjct: 301 SHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARHDFIKLSGSENKL 360

Query: 361 EALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPAQKRVENLKKF 420
           EALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPAQKRVENLKKF
Sbjct: 361 EALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQKRVENLKKF 420

Query: 421 KSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 480
           KSDD DCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVTSLVA
Sbjct: 421 KSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTSLVA 480

Query: 481 KKDDVLATRIEEAIRKNESLESLTTDNVRRDNARDNITRQKTKNEKLVKVSSERRRMQSQ 540
           KKDD+LATRIEEAIRKNESLESLT DNVRRD ARD I  QKTKN KLVK SSER R +S 
Sbjct: 481 KKDDILATRIEEAIRKNESLESLTADNVRRDIARDRIMEQKTKNAKLVKASSERSRAKS- 540

Query: 541 SSVVATTRSSSTTKSSSVHSKSPSGKPSSPAKTRKPAVRVSKPVKTLKTIPQKPSSELKK 600
                   S+S  KSSSVHSK  SGK SS  +T+KP V VSK  K+ + I +KPSSE KK
Sbjct: 541 --------STSALKSSSVHSKGESGKASSTPRTQKPGVPVSKS-KSSRNIQRKPSSESKK 600

Query: 601 PMTNRRRPGSAIKSPGQKLNVVGFRGRSSSSQSDKRQSVS 641
            + +RRRPGSAIKS  QKLNVVGFRGR  S+QSDKR+SVS
Sbjct: 601 HVASRRRPGSAIKSTSQKLNVVGFRGR--SNQSDKRRSVS 626

[Close]

BLAST of Sed0016760 vs. ExPASy Swiss-Prot
Match: Q56X76 (DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana OX=3702 GN=RH39 PE=2 SV=2)

HSP 1 Score: 759.6 bits (1960), Expect = 2.8e-218
Identity = 422/636 (66.35%), Postives = 507/636 (79.72%), Query Frame = 0


Query: 1   MGGTGRTLLSLSISTNLLISSRLSPPKCLPLFKIPKPITNFSRFRPLCSATAVATTSESM 60
           M G  RT+LSLS+S++L   S++  P   P  ++ KP  + + FRPL S  A ATTS   
Sbjct: 1   MVGASRTILSLSLSSSLFTFSKI--PHVFPFLRLHKPRFHHA-FRPLYS--AAATTSSPT 60

Query: 61  ETTQATEP--LKHSPLLDRLRARHLKESASTTKLTRNRALQSVDEAKKVDKQRKKLVESF 120
             T  T+P  LKH+ LL+RLR RHLKESA   +  R  ++  V+E   + K+ KKLVE+F
Sbjct: 61  TETNVTDPDQLKHTILLERLRLRHLKESAKPPQ-QRPSSVVGVEEESSIRKKSKKLVENF 120

Query: 121 EELGLTEEVMGAVREMGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTLAYLLPLVQLL 180
           +ELGL+EEVMGA++E+ IEVPTEIQCIGIPAV++  SV+LGSHTGSGKTLAYLLP+VQL+
Sbjct: 121 QELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQLM 180

Query: 181 RRDEEMFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRIRPQED 240
           R DE   GK  KPRRPR VVLCPTRELSEQV+RV+KSISHHARFRS +VSGG RIRPQED
Sbjct: 181 REDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQED 240

Query: 241 SLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFISPLNHR 300
           SL+N IDMVVGTPGR+LQHIE GNMVYGDI YLVLDEADTMFD GFGP+IRKF++PLN R
Sbjct: 241 SLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQR 300

Query: 301 ASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARHDFIKLSGGEN 360
           A   +DQGFQT+LVTATMT AVQKL+DEEFQGI HLRTS+LHKKIA+ARHDFIKLSGGE+
Sbjct: 301 ALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGGED 360

Query: 361 KLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPAQKRVENLK 420
           KLEALLQVLEPSLAKG++VMVFCNTLNSSRAVDH+LSENQISTVNYHGEVPA++RVENLK
Sbjct: 361 KLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLK 420

Query: 421 KFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 480
           KFK ++ DCPTLVCTDLAARGLDLDVDHV+MFDFP NSIDYLHRTGRTARMGAKGKVTSL
Sbjct: 421 KFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVTSL 480

Query: 481 VAKKDDVLATRIEEAIRKNESLESLTTDNVRRDNARDNITRQKTKNEKLVKVSSERRRMQ 540
           V++KD +LA RIEEA+R NESLESLTTDNVRRD AR +IT++K ++ K ++  S++R  +
Sbjct: 481 VSRKDQMLAARIEEAMRNNESLESLTTDNVRRDAARTHITQEKGRSVKQIREVSKQRNSR 540

Query: 541 SQSSVVATTRSSSTTKSSSVHSKSPSGKPSSPAKTRKPAVRVSKPV-KTLKTIPQKPSSE 600
            + S  +++  + +T   +   KS S   S P K   P  + SKP  K LKT+  +  + 
Sbjct: 541 DKPS--SSSPPARSTGGKTPVRKSSSSSFSKPRKASSPPEKSSKPKRKILKTVGSRSIAA 600

Query: 601 LKKPMTNRRRPGSAIKSPGQKLNVVGFRGRSSSSQS 634
             K  ++RR        PG+KL+VVGFRG+SSS+++
Sbjct: 601 RGKTGSDRR--------PGKKLSVVGFRGKSSSARA 620

[Close]

BLAST of Sed0016760 vs. ExPASy Swiss-Prot
Match: Q5VRY0 (DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0184500 PE=2 SV=1)

HSP 1 Score: 713.8 bits (1841), Expect = 1.8e-204
Identity = 401/626 (64.06%), Postives = 467/626 (74.60%), Query Frame = 0


Query: 27  KCLPLFKIPKPITNFSRFRPLCSATAVATTSESM---------ETTQATEPLKHSPLLDR 86
           +CL L + P P+      R   + T   TT+            ETT    P +H  LL+R
Sbjct: 9   RCLMLTR-PSPLLRLRLLRAALATTTTTTTAAGASAVTAPTEPETTAREAPSRHELLLER 68

Query: 87  LRARHLKESASTT----KLTRNRALQSVDEAKKVDKQRKKLVESFEELGLTEEVMGAVRE 146
           LR RHLK   + T    +  + R        +   K+R ++V+SFEELGL EEVM A+ E
Sbjct: 69  LRQRHLKGVPAATPRPAQREKGRGGGGGGAQELQQKRRVEVVDSFEELGLGEEVMAALGE 128

Query: 147 MGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTLAYLLPLVQLLRRDEEMFGKLMKPRR 206
           MGI  PTEIQC+G+PAVL GTSV+LGSHTGSGKTLAYLLPLVQLLRRDE M G  MKPRR
Sbjct: 129 MGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQLLRRDEAMLGMSMKPRR 188

Query: 207 PRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRIRPQEDSLSNPIDMVVGTPGR 266
           PRAVVLCPTREL+EQVFRV+KSISHHARFRSTMVSGG RIRPQEDSL+ P+DMVVGTPGR
Sbjct: 189 PRAVVLCPTRELTEQVFRVAKSISHHARFRSTMVSGGSRIRPQEDSLNMPVDMVVGTPGR 248

Query: 267 VLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFISPLNHRASSHDDQGFQTILVT 326
           +L HI+ GNMVYGDIKYLVLDEADTMFD GFGPDIRKF++PL +RA+   DQGFQT+LVT
Sbjct: 249 ILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLKNRAAKPGDQGFQTVLVT 308

Query: 327 ATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARHDFIKLSGGENKLEALLQVLEPSLAK 386
           ATMTKAVQKLIDEEF+GIVHLRT++  K++A+ARHDFIKLSG ENKLEALLQVLEPSLAK
Sbjct: 309 ATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDFIKLSGSENKLEALLQVLEPSLAK 368

Query: 387 GNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPAQKRVENLKKFKSDDADCPTLVCT 446
           GN+VMVFCNTLNSSRAVDHFL+ENQISTVNYHGEVPA++RVENL KF++++ DCPTLVCT
Sbjct: 369 GNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVENLNKFRNEEGDCPTLVCT 428

Query: 447 DLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDDVLATRIEEA 506
           DLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVTSLVAKKD  LATRIEEA
Sbjct: 429 DLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTSLVAKKDVTLATRIEEA 488

Query: 507 IRKNESLESLTTDNVRRDNARDNITRQKTKNEKLVKVSSERRR---MQSQSSVVATTRSS 566
           ++KNESLE+LTT+NVRR       T  K +   L  V+ + RR   +Q++SS +    +S
Sbjct: 489 MKKNESLEALTTNNVRRAAVNPQYTSTKGRPSALKVVNQKGRRGVALQTKSSRIVKDTTS 548

Query: 567 STTKS---SSVHSKSPSGKPSSPAKTRKPAVRVSKPVKTLKTIPQKPSSELKKPMTNRRR 626
           S  +S   S   SKS S   + P ++ KP+   S   K  K+ P+              R
Sbjct: 549 SRRRSPIRSQPRSKSTSSGKAKPVRSAKPSKSSSPSPKVAKSRPRPEG-----------R 608

Query: 627 PGSAIKSPGQKLNVVGFRGRSSSSQS 634
            G A+   G KL+VVGFRGRSS   +
Sbjct: 609 KGDALNKLGSKLSVVGFRGRSSGKSA 622

[Close]

BLAST of Sed0016760 vs. ExPASy Swiss-Prot
Match: Q0DVX2 (DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0108600 PE=2 SV=2)

HSP 1 Score: 210.3 bits (534), Expect = 6.4e-53
Identity = 137/410 (33.41%), Postives = 217/410 (52.93%), Query Frame = 0


Query: 117 SFEELGLTEEVMGAVREMGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTLAYLLPLVQ 176
           SF+E+G ++E++GA+R  G   P+ IQ +    VL+G S I+G  +GSGKTLAYL P+VQ
Sbjct: 241 SFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQ 300

Query: 177 LLRRDEEMFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHH-ARFRSTMVSGGGRIRP 236
            LR++E        PR PR VVL PT EL+ QV    +SIS     FRS + +GG R + 
Sbjct: 301 NLRKEEVEGLHRSSPRNPRVVVLTPTAELASQVLNNCRSISKSGVPFRSMVATGGFRQKT 360

Query: 237 QEDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMF-DHGFGPDIRKFI-- 296
           Q +SL   +D+++ TPGR L  ++ G +   +++ +VLDE D ++ +  F   + + I  
Sbjct: 361 QLESLDQELDVLIATPGRFLYLLQEGFVQLNNLRCVVLDEVDILYGEESFEQVLHQLITV 420

Query: 297 SPLNHRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARHDFIK 356
           +PL            Q + VTAT+   +   + E F     +    +H+  +      + 
Sbjct: 421 APLT----------TQYLFVTATLPLDIYNKVVETFPDCELIMGPGVHRTSSRLEEILVD 480

Query: 357 LSGGE-----------NKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL-----SE 416
            SG +           NK  AL++++E S  +  + ++FCN + + R V++ L       
Sbjct: 481 CSGDDNEEKNPETAFSNKKSALVKIIEESPVR--KTIIFCNKIETCRKVENALRRVDRKA 540

Query: 417 NQISTVNYHGEVPAQKRVENLKKF-KSDDADCPTLVCTDLAARGLDL-DVDHVIMFDFPL 476
           +QI  + +H  +  Q+R+ N+K+F     AD   LVCTD A+RG+D  +V+HV++FD+P 
Sbjct: 541 SQIKVLPFHAALDQQQRIANIKEFLNKQTADSMFLVCTDRASRGIDFANVNHVVLFDYPR 600

Query: 477 NSIDYLHRTGRTAR-MGAKGKVTSLVAKKDDVLATRIEEAIRKNESLESL 504
           +  +Y+ R GRTAR     GK       K   LA R+ E   K   L  +
Sbjct: 601 DPSEYVRRVGRTARGASGNGKAFVFAVGKQVSLARRVMERNIKGHPLHDV 638

[Close]

BLAST of Sed0016760 vs. ExPASy Swiss-Prot
Match: Q2U070 (ATP-dependent RNA helicase dbp2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp2 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.3e-50
Identity = 133/388 (34.28%), Postives = 204/388 (52.58%), Query Frame = 0


Query: 95  NRALQSVDEAKK---VDKQRKKL---VESFEELGLTEEVMGAVREMGIEVPTEIQCIGIP 154
           NR+ + VDE +K   +  Q K +   VE+F+E G  + V+  V+  G E PT IQ  G P
Sbjct: 103 NRSQRDVDEFRKKFEMSVQGKNIPRPVETFDEAGFPQYVLSEVKAQGFERPTAIQSQGWP 162

Query: 155 AVLDGTSVILGSHTGSGKTLAYLLPLVQLLRRDEEMFGKLMKP-RRPRAVVLCPTRELSE 214
             L G  V+  + TGSGKTL+Y LP +  +         L+ P   P  +VL PTREL+ 
Sbjct: 163 MALSGRDVVGIAETGSGKTLSYCLPAIVHINAQ-----PLLAPGDGPIVLVLAPTRELAV 222

Query: 215 QVFRVSKSISHHARFRSTMVSGGGRIRPQEDSLSNPIDMVVGTPGRVLQHIEAGNMVYGD 274
           Q+          +R R+T V GG    PQ   LS  +++ + TPGR++  +EAG      
Sbjct: 223 QIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRR 282

Query: 275 IKYLVLDEADTMFDHGFGPDIRKFISPLNHRASSHDDQGFQTILVTATMTKAVQKLIDEE 334
           + YLVLDEAD M D GF P IRK IS +            QT + +AT  K V++L  + 
Sbjct: 283 VTYLVLDEADRMLDMGFEPQIRKIISQIR--------PDRQTCMWSATWPKEVRQLASDF 342

Query: 335 FQGIVHLRTSSLHKKIASARHDFIKLSGGENKLEALLQVLEPSLA-KGNRVMVFCNTLNS 394
               + +   S+           +++     K + +++ LE  +  +GN+ ++F  T   
Sbjct: 343 LNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMENRGNKCLIFTGTKRI 402

Query: 395 SRAVDHFLSENQISTVNYHGEVPAQKRVENLKKFKSDDADCPTLVCTDLAARGLDL-DVD 454
           +  +  FL ++    ++ HG+   Q+R   L +FK+  +  P +V TD+A+RG+D+ D+ 
Sbjct: 403 ADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKS--PIMVATDVASRGIDVRDIT 462

Query: 455 HVIMFDFPLNSIDYLHRTGRTARMGAKG 474
           HV+ +D+P NS DY+HR GRT R GAKG
Sbjct: 463 HVLNYDYPNNSEDYVHRIGRTGRAGAKG 475

[Close]

BLAST of Sed0016760 vs. ExPASy Swiss-Prot
Match: Q5B0J9 (ATP-dependent RNA helicase dbp2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=dbp2 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.1e-49
Identity = 138/411 (33.58%), Postives = 211/411 (51.34%), Query Frame = 0


Query: 96  RALQSVDEAKK------VDKQRKKLVESFEELGLTEEVMGAVREMGIEVPTEIQCIGIPA 155
           R+ + VDE +K        +   + VE+F+E G  + V+  V+  G E PT IQ  G P 
Sbjct: 114 RSQREVDEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPM 173

Query: 156 VLDGTSVILGSHTGSGKTLAYLLPLVQLLRRDEEMFGKLMKP-RRPRAVVLCPTRELSEQ 215
            L G  V+  + TGSGKTL+Y LP +  +         L+ P   P  ++L PTREL+ Q
Sbjct: 174 ALSGRDVVGIAETGSGKTLSYCLPAIVHINAQ-----PLLAPGDGPIVLILAPTRELAVQ 233

Query: 216 VFRVSKSISHHARFRSTMVSGGGRIRPQEDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDI 275
           +          +R R+T V GG    PQ   LS  +++ + TPGR++  +EAG      +
Sbjct: 234 IQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRV 293

Query: 276 KYLVLDEADTMFDHGFGPDIRKFISPLNHRASSHDDQGFQTILVTATMTKAVQKLIDEEF 335
            YLVLDEAD M D GF P IRK IS +            QT + +AT  K V++L  +  
Sbjct: 294 TYLVLDEADRMLDMGFEPQIRKIISQIR--------PDRQTCMWSATWPKEVRQLASDFL 353

Query: 336 QGIVHLRTSSLHKKIASARHDFIKLSGGENKLEALLQVLEPSLA-KGNRVMVFCNTLNSS 395
              + +   S+           +++     K + +++ LE  +  +GN+ +VF  T   +
Sbjct: 354 NNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIKHLEKIMENRGNKCLVFTGTKRIA 413

Query: 396 RAVDHFLSENQISTVNYHGEVPAQKRVENLKKFKSDDADCPTLVCTDLAARGLDL-DVDH 455
             +  FL ++    ++ HG+   Q+R   L +FK+  +  P +V TD+A+RG+D+ D+ H
Sbjct: 414 DEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKS--PIMVATDVASRGIDVRDITH 473

Query: 456 VIMFDFPLNSIDYLHRTGRTARMGAKGKV----TSLVAKKDDVLATRIEEA 494
           VI +D+P NS DY+HR GRT R GAKG      T+  AK+   L T + EA
Sbjct: 474 VINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQARDLVTILSEA 509

[Close]

BLAST of Sed0016760 vs. ExPASy TrEMBL
Match: A0A6J1CPE5 (DEAD-box ATP-dependent RNA helicase 39 OS=Momordica charantia OX=3673 GN=LOC111013516 PE=4 SV=1)

HSP 1 Score: 997.7 bits (2578), Expect = 2.3e-287
Identity = 544/646 (84.21%), Postives = 578/646 (89.47%), Query Frame = 0


Query: 1   MGGTGRTLLSLSISTNLLISSRLSPPKCLPLFKIPKPITNFSRFRPLCSATAVATTSESM 60
           MGGTGRTLLSLSISTNLL+ SR+SPPKC PL KIPKP+  FS FRPLCSATA  T +ESM
Sbjct: 1   MGGTGRTLLSLSISTNLLLMSRVSPPKCFPLLKIPKPVRIFSGFRPLCSATADTTPTESM 60

Query: 61  ETTQATEPLKHSPLLDRLRARHLKESASTTKLTRNRALQSV----DEAKKVDKQRKK-LV 120
           ETTQ  EPLKHS LL+RLRARHLKESAS TK  R+    SV    DE  K +K++KK LV
Sbjct: 61  ETTQVIEPLKHSLLLERLRARHLKESASKTKQARSTLSPSVGGAEDEMNKAEKKKKKNLV 120

Query: 121 ESFEELGLTEEVMGAVREMGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTLAYLLPLV 180
           ESFEELGL EEVMGAVREMGIEVPTEIQCIGIPAVL+G SVILGSHTGSGKTLAYLLPLV
Sbjct: 121 ESFEELGLNEEVMGAVREMGIEVPTEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLV 180

Query: 181 QLLRRDEEMFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRIRP 240
           QLLRRDEE+FGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGR+RP
Sbjct: 181 QLLRRDEELFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRP 240

Query: 241 QEDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFISPL 300
           QEDSLSNPI+MVVGTPGRVLQHIEAGN+VYGDIKYLVLDEADTMFDHGFGPDIRKFISPL
Sbjct: 241 QEDSLSNPIEMVVGTPGRVLQHIEAGNIVYGDIKYLVLDEADTMFDHGFGPDIRKFISPL 300

Query: 301 NHRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARHDFIKLSG 360
            HRASSH+DQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTS+LHKKIASARHDFIKLSG
Sbjct: 301 KHRASSHEDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSG 360

Query: 361 GENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPAQKRVE 420
            ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPAQKRVE
Sbjct: 361 SENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQKRVE 420

Query: 421 NLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 480
           NLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV
Sbjct: 421 NLKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 480

Query: 481 TSLVAKKDDVLATRIEEAIRKNESLESLTTDNVRRDNARDNITRQKTKNEKLVKVSSERR 540
           TSLVAKKD +LATRIEEAIRKNESLESLT DNVRRD ARD IT QKTK  KLV+VSSE+ 
Sbjct: 481 TSLVAKKDAILATRIEEAIRKNESLESLTADNVRRDIARDRITEQKTKTAKLVRVSSEKS 540

Query: 541 RMQSQSSVVATTRSSSTTKSSSVHSKSPSGKPSSPAKTRKPAVRVSKPVKTLKTIPQKPS 600
           + +S S       +++TTKSSS+ S+  SGK  SPAK++K AVRVSK V + +  P+KPS
Sbjct: 541 KAKSSS-------AAATTKSSSIRSQGSSGKAPSPAKSQKSAVRVSKSVDSSRNNPRKPS 600

Query: 601 SELKKPM-TNRRRPGSAIKSPGQKLNVVGFRGRSSSSQSDKRQSVS 641
           S  KKPM ++RRRPG AIKS G KLNVVGFRGR  S+QSDKRQSVS
Sbjct: 601 SGSKKPMASSRRRPGIAIKSTGPKLNVVGFRGR--SNQSDKRQSVS 637

[Close]

BLAST of Sed0016760 vs. ExPASy TrEMBL
Match: A0A5D3CSB8 (DEAD-box ATP-dependent RNA helicase 39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G00130 PE=4 SV=1)

HSP 1 Score: 994.6 bits (2570), Expect = 1.9e-286
Identity = 538/645 (83.41%), Postives = 566/645 (87.75%), Query Frame = 0


Query: 1   MGGTGRTLLSLSISTNLLISSRLSPPKCLPLFKIPKPITNFSRFRPLCSATAVATTSESM 60
           MGGTGRTLLSLSISTNLLISSRLSPPKCLPL KIPKP  NFS FRPL SAT   T++ES 
Sbjct: 1   MGGTGRTLLSLSISTNLLISSRLSPPKCLPLLKIPKPFRNFSGFRPLSSATTATTSTEST 60

Query: 61  ETTQATEPLKHSPLLDRLRARHLKESASTTKLTRNRALQSV----DEAKKVDKQRKKLVE 120
           E  Q  EPLKHS LL+RLR RHLKESA  TK TRN   QSV    DE KK +K+ KKLVE
Sbjct: 61  EAIQVIEPLKHSQLLERLRTRHLKESAPKTKPTRNTLSQSVGSAEDEMKKSEKKNKKLVE 120

Query: 121 SFEELGLTEEVMGAVREMGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTLAYLLPLVQ 180
           SFEELGL EEVMGAVREMGI+VPTEIQCIGIPAVL+G SVILGSHTGSGKTLAYLLPLVQ
Sbjct: 121 SFEELGLNEEVMGAVREMGIQVPTEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQ 180

Query: 181 LLRRDEEMFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRIRPQ 240
           LLRRDEE+FGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGR+RPQ
Sbjct: 181 LLRRDEELFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQ 240

Query: 241 EDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFISPLN 300
           EDSLSNPIDMVVGTPGRVLQHI+AGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFI PL 
Sbjct: 241 EDSLSNPIDMVVGTPGRVLQHIQAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFIGPLK 300

Query: 301 HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARHDFIKLSGG 360
           HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTS+LHKKIASARHDFIKLSG 
Sbjct: 301 HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGS 360

Query: 361 ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPAQKRVEN 420
           ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPAQKRVEN
Sbjct: 361 ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQKRVEN 420

Query: 421 LKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 480
           LKKFKSDD DCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 421 LKKFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 480

Query: 481 SLVAKKDDVLATRIEEAIRKNESLESLTTDNVRRDNARDNITRQKTKNEKLVKVSSERRR 540
           SLV KKDD+LATRIEEAI+KNESLESLT D+VRRD ARD IT  KTKN KL+K S+  R 
Sbjct: 481 SLVGKKDDILATRIEEAIQKNESLESLTADSVRRDIARDRITEHKTKNAKLIKASTGSR- 540

Query: 541 MQSQSSVVATTRSSSTTKSSSVHSKSPSGKPSSPAKTRKPAVRVSKPVKTLKTIPQKPSS 600
                       ++S  KSSSVHSK  +GK S   +T+KP V VSK VK+ + IP+KPSS
Sbjct: 541 ---------AKSATSAPKSSSVHSKGETGKASYSERTQKPGVPVSKLVKSSRNIPRKPSS 600

Query: 601 ELKKPMTNRRRPGSAIKSPGQKLNVVGFRGRSSSSQSDKRQSVSR 642
           E KK + +RRRPGSAIKS GQKLNVVGFRGR  S+Q DKR+SVSR
Sbjct: 601 ETKKQVASRRRPGSAIKSSGQKLNVVGFRGR--SNQFDKRRSVSR 633

[Close]

BLAST of Sed0016760 vs. ExPASy TrEMBL
Match: A0A1S3CFM7 (DEAD-box ATP-dependent RNA helicase 39 OS=Cucumis melo OX=3656 GN=LOC103500395 PE=4 SV=1)

HSP 1 Score: 993.0 bits (2566), Expect = 5.6e-286
Identity = 537/644 (83.39%), Postives = 565/644 (87.73%), Query Frame = 0


Query: 1   MGGTGRTLLSLSISTNLLISSRLSPPKCLPLFKIPKPITNFSRFRPLCSATAVATTSESM 60
           MGGTGRTLLSLSISTNLLISSRLSPPKCLPL KIPKP  NFS FRPL SAT   T++ES 
Sbjct: 1   MGGTGRTLLSLSISTNLLISSRLSPPKCLPLLKIPKPFRNFSGFRPLSSATTATTSTEST 60

Query: 61  ETTQATEPLKHSPLLDRLRARHLKESASTTKLTRNRALQSV----DEAKKVDKQRKKLVE 120
           E  Q  EPLKHS LL+RLR RHLKESA  TK TRN   QSV    DE KK +K+ KKLVE
Sbjct: 61  EAIQVIEPLKHSQLLERLRTRHLKESAPKTKPTRNTLSQSVGSAEDEMKKSEKKNKKLVE 120

Query: 121 SFEELGLTEEVMGAVREMGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTLAYLLPLVQ 180
           SFEELGL EEVMGAVREMGI+VPTEIQCIGIPAVL+G SVILGSHTGSGKTLAYLLPLVQ
Sbjct: 121 SFEELGLNEEVMGAVREMGIQVPTEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQ 180

Query: 181 LLRRDEEMFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRIRPQ 240
           LLRRDEE+FGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGR+RPQ
Sbjct: 181 LLRRDEELFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQ 240

Query: 241 EDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFISPLN 300
           EDSLSNPIDMVVGTPGRVLQHI+AGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFI PL 
Sbjct: 241 EDSLSNPIDMVVGTPGRVLQHIQAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFIGPLK 300

Query: 301 HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARHDFIKLSGG 360
           HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTS+LHKKIASARHDFIKLSG 
Sbjct: 301 HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGS 360

Query: 361 ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPAQKRVEN 420
           ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPAQKRVEN
Sbjct: 361 ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQKRVEN 420

Query: 421 LKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 480
           LKKFKSDD DCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 421 LKKFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 480

Query: 481 SLVAKKDDVLATRIEEAIRKNESLESLTTDNVRRDNARDNITRQKTKNEKLVKVSSERRR 540
           SLV KKDD+LATRIEEAI+KNESLESLT D+VRRD ARD IT  KTKN KL+K S+  R 
Sbjct: 481 SLVGKKDDILATRIEEAIQKNESLESLTADSVRRDIARDRITEHKTKNAKLIKASTGSR- 540

Query: 541 MQSQSSVVATTRSSSTTKSSSVHSKSPSGKPSSPAKTRKPAVRVSKPVKTLKTIPQKPSS 600
                       ++S  KSSSVHSK  +GK S   +T+KP V VSK VK+ + IP+KPSS
Sbjct: 541 ---------AKSATSAPKSSSVHSKGETGKASYSERTQKPGVPVSKLVKSSRNIPRKPSS 600

Query: 601 ELKKPMTNRRRPGSAIKSPGQKLNVVGFRGRSSSSQSDKRQSVS 641
           E KK + +RRRPGSAIKS GQKLNVVGFRGR  S+Q DKR+SVS
Sbjct: 601 ETKKQVASRRRPGSAIKSSGQKLNVVGFRGR--SNQFDKRRSVS 632

[Close]

BLAST of Sed0016760 vs. ExPASy TrEMBL
Match: A0A6J1F9C3 (DEAD-box ATP-dependent RNA helicase 39 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443261 PE=4 SV=1)

HSP 1 Score: 981.1 bits (2535), Expect = 2.2e-282
Identity = 532/641 (83.00%), Postives = 568/641 (88.61%), Query Frame = 0


Query: 1   MGGTGRTLLSLSISTNLLISSRLSPPKCLPLFKIPKPITNFSRFRPLCSATAVATTSESM 60
           MGGTGRTLLSLS+STNLLIS+R+SPPKCL L KIPKPI NFS FRPLCSAT+ AT++ES 
Sbjct: 1   MGGTGRTLLSLSVSTNLLISARVSPPKCLSLLKIPKPIRNFSGFRPLCSATSAATSAEST 60

Query: 61  ETTQATEPLKHSPLLDRLRARHLKESASTTKLTRNRALQSVDEAKKVDKQRKKLVESFEE 120
           ETTQA EPLKHS LL+RLR RHL ESAS TKL    A+ S +E  K  +++KKLVESFEE
Sbjct: 61  ETTQAIEPLKHSILLERLRTRHLNESASKTKL----AVGSGEEKMKKPEKKKKLVESFEE 120

Query: 121 LGLTEEVMGAVREMGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTLAYLLPLVQLLRR 180
           LGL EEVMGA+REM IEVPTEIQ IGIPAVL+G SVILGSHTGSGKTLAYLLPLVQLLRR
Sbjct: 121 LGLNEEVMGALREMNIEVPTEIQSIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQLLRR 180

Query: 181 DEEMFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRIRPQEDSL 240
           DEE+FGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRIRPQEDSL
Sbjct: 181 DEELFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRIRPQEDSL 240

Query: 241 SNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFISPLNHRAS 300
           SNPIDMVVGTPGRVLQHI+AGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFI PL HRAS
Sbjct: 241 SNPIDMVVGTPGRVLQHIDAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFIGPLKHRAS 300

Query: 301 SHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARHDFIKLSGGENKL 360
           SHD QGFQTIL+TATMTKAVQKLIDEEFQGIVHLRTS+LHKKIASARHDFIKLSG ENK+
Sbjct: 301 SHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKM 360

Query: 361 EALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPAQKRVENLKKF 420
           EALLQVLEPSLAKGNR+MVFCNTLNSSRAVDHFL ENQISTVNYHGEVPAQ+RVENLKKF
Sbjct: 361 EALLQVLEPSLAKGNRIMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQQRVENLKKF 420

Query: 421 KSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 480
           KSDDADCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKG VTSLV 
Sbjct: 421 KSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGNVTSLVT 480

Query: 481 KKDDVLATRIEEAIRKNESLESLTTDNVRRDNARDN-ITRQKTKNEKLVKVSSERRRMQS 540
           KKD++LATRIEEAIRKNESLESLT DNVRRD AR+  IT QKTKNEK VKVS ER R +S
Sbjct: 481 KKDNILATRIEEAIRKNESLESLTADNVRRDIARERMITEQKTKNEKFVKVSKERNRAKS 540

Query: 541 QSSVVATTRSSSTTKSSSVHSKSPSGKPSSPAKTRKPAVRVSKPVKTLKTIPQKPSSELK 600
            +S  A        K SSVHSK  SGK +SPAKT+K  VRVSK  K  + +P+KPSSE K
Sbjct: 541 STSPAA--------KPSSVHSKDESGK-ASPAKTQKSGVRVSKSTKPSRNVPRKPSSEPK 600

Query: 601 KPMTNRRRPGSAIKSPGQKLNVVGFRGRSSSSQSDKRQSVS 641
           K + +RR+P + IK  GQKLNVVGFRGR  SSQSDKR+SVS
Sbjct: 601 KQVASRRQPRNGIKPSGQKLNVVGFRGR--SSQSDKRRSVS 626

[Close]

BLAST of Sed0016760 vs. ExPASy TrEMBL
Match: A0A6J1IQ01 (DEAD-box ATP-dependent RNA helicase 39 OS=Cucurbita maxima OX=3661 GN=LOC111477141 PE=4 SV=1)

HSP 1 Score: 975.3 bits (2520), Expect = 1.2e-280
Identity = 531/641 (82.84%), Postives = 562/641 (87.68%), Query Frame = 0


Query: 1   MGGTGRTLLSLSISTNLLISSRLSPPKCLPLFKIPKPITNFSRFRPLCSATAVATTSESM 60
           MGGTGRTLLSLS+STNLLIS+R+SPPKCL L KIPKPI NFS FRPLCSAT+  T +ES 
Sbjct: 1   MGGTGRTLLSLSVSTNLLISARVSPPKCLSLLKIPKPIRNFSGFRPLCSATSATTNAEST 60

Query: 61  ETTQATEPLKHSPLLDRLRARHLKESASTTKLTRNRALQSVDEAKKVDKQRKKLVESFEE 120
           ETTQA EPLKHS LL+RLR RHL ESAS TK      + S +E  K  +++KKLVESFEE
Sbjct: 61  ETTQAIEPLKHSILLERLRTRHLNESASKTK----PVVGSGEEKMKKPEKKKKLVESFEE 120

Query: 121 LGLTEEVMGAVREMGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTLAYLLPLVQLLRR 180
           LGL EEVMGA+REM IEVPTEIQ IGIPAVL+G SVILGSHTGSGKTLAYLLPLVQLLRR
Sbjct: 121 LGLNEEVMGALREMNIEVPTEIQSIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQLLRR 180

Query: 181 DEEMFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRIRPQEDSL 240
           DEE+FGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRIRPQEDSL
Sbjct: 181 DEELFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRIRPQEDSL 240

Query: 241 SNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFISPLNHRAS 300
           SNPIDMVVGTPGRVLQHI+AGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFI PL HRAS
Sbjct: 241 SNPIDMVVGTPGRVLQHIDAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFIGPLKHRAS 300

Query: 301 SHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARHDFIKLSGGENKL 360
           SHD QGFQTIL+TATMTKAVQKLIDEEFQGIVHLRTS+LHKKIASARHDFIKLSG ENK+
Sbjct: 301 SHDGQGFQTILITATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKM 360

Query: 361 EALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPAQKRVENLKKF 420
           EALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPAQ+RVENLKKF
Sbjct: 361 EALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQQRVENLKKF 420

Query: 421 KSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 480
           KSDDADCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKG VTSLV 
Sbjct: 421 KSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGNVTSLVT 480

Query: 481 KKDDVLATRIEEAIRKNESLESLTTDNVRRDNARDN-ITRQKTKNEKLVKVSSERRRMQS 540
           KKD +LATRIEEAIRKNESLESLT DNVRRD ARD  IT QK KNEKLVKVS ER R +S
Sbjct: 481 KKDHILATRIEEAIRKNESLESLTADNVRRDIARDRMITEQKMKNEKLVKVSKERTRAKS 540

Query: 541 QSSVVATTRSSSTTKSSSVHSKSPSGKPSSPAKTRKPAVRVSKPVKTLKTIPQKPSSELK 600
                    S+S  K SSVHSK  SGK SSP KT+K  VRVSK  K  + +P+KPSSE K
Sbjct: 541 ---------STSAAKPSSVHSKDESGKASSPVKTQKSGVRVSKLTKPSRNVPRKPSSEPK 600

Query: 601 KPMTNRRRPGSAIKSPGQKLNVVGFRGRSSSSQSDKRQSVS 641
           K +T+RR+  + IK  GQKLNVVGFRGR  SSQSDKR+SVS
Sbjct: 601 KQVTSRRQSRNGIKPSGQKLNVVGFRGR--SSQSDKRRSVS 626

[Close]

BLAST of Sed0016760 vs. TAIR 10
Match: AT4G09730.1 (RH39 )

HSP 1 Score: 759.6 bits (1960), Expect = 2.0e-219
Identity = 422/636 (66.35%), Postives = 507/636 (79.72%), Query Frame = 0


Query: 1   MGGTGRTLLSLSISTNLLISSRLSPPKCLPLFKIPKPITNFSRFRPLCSATAVATTSESM 60
           M G  RT+LSLS+S++L   S++  P   P  ++ KP  + + FRPL S  A ATTS   
Sbjct: 1   MVGASRTILSLSLSSSLFTFSKI--PHVFPFLRLHKPRFHHA-FRPLYS--AAATTSSPT 60

Query: 61  ETTQATEP--LKHSPLLDRLRARHLKESASTTKLTRNRALQSVDEAKKVDKQRKKLVESF 120
             T  T+P  LKH+ LL+RLR RHLKESA   +  R  ++  V+E   + K+ KKLVE+F
Sbjct: 61  TETNVTDPDQLKHTILLERLRLRHLKESAKPPQ-QRPSSVVGVEEESSIRKKSKKLVENF 120

Query: 121 EELGLTEEVMGAVREMGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTLAYLLPLVQLL 180
           +ELGL+EEVMGA++E+ IEVPTEIQCIGIPAV++  SV+LGSHTGSGKTLAYLLP+VQL+
Sbjct: 121 QELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQLM 180

Query: 181 RRDEEMFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRIRPQED 240
           R DE   GK  KPRRPR VVLCPTRELSEQV+RV+KSISHHARFRS +VSGG RIRPQED
Sbjct: 181 REDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQED 240

Query: 241 SLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFISPLNHR 300
           SL+N IDMVVGTPGR+LQHIE GNMVYGDI YLVLDEADTMFD GFGP+IRKF++PLN R
Sbjct: 241 SLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQR 300

Query: 301 ASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARHDFIKLSGGEN 360
           A   +DQGFQT+LVTATMT AVQKL+DEEFQGI HLRTS+LHKKIA+ARHDFIKLSGGE+
Sbjct: 301 ALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGGED 360

Query: 361 KLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPAQKRVENLK 420
           KLEALLQVLEPSLAKG++VMVFCNTLNSSRAVDH+LSENQISTVNYHGEVPA++RVENLK
Sbjct: 361 KLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLK 420

Query: 421 KFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 480
           KFK ++ DCPTLVCTDLAARGLDLDVDHV+MFDFP NSIDYLHRTGRTARMGAKGKVTSL
Sbjct: 421 KFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVTSL 480

Query: 481 VAKKDDVLATRIEEAIRKNESLESLTTDNVRRDNARDNITRQKTKNEKLVKVSSERRRMQ 540
           V++KD +LA RIEEA+R NESLESLTTDNVRRD AR +IT++K ++ K ++  S++R  +
Sbjct: 481 VSRKDQMLAARIEEAMRNNESLESLTTDNVRRDAARTHITQEKGRSVKQIREVSKQRNSR 540

Query: 541 SQSSVVATTRSSSTTKSSSVHSKSPSGKPSSPAKTRKPAVRVSKPV-KTLKTIPQKPSSE 600
            + S  +++  + +T   +   KS S   S P K   P  + SKP  K LKT+  +  + 
Sbjct: 541 DKPS--SSSPPARSTGGKTPVRKSSSSSFSKPRKASSPPEKSSKPKRKILKTVGSRSIAA 600

Query: 601 LKKPMTNRRRPGSAIKSPGQKLNVVGFRGRSSSSQS 634
             K  ++RR        PG+KL+VVGFRG+SSS+++
Sbjct: 601 RGKTGSDRR--------PGKKLSVVGFRGKSSSARA 620

[Close]

BLAST of Sed0016760 vs. TAIR 10
Match: AT3G06980.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 199.5 bits (506), Expect = 8.1e-51
Identity = 134/410 (32.68%), Postives = 217/410 (52.93%), Query Frame = 0


Query: 116 ESFEELGLTEEVMGAVREMGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTLAYLLPLV 175
           ++F E+G +E++M A++E   + P  IQ +    V+DG S I+   +GSGKTLAYL+P++
Sbjct: 374 KTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433

Query: 176 QLLRRDEEMFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHH-ARFRSTMVSGGGRIR 235
           Q LR +E        P  PR +VL PT EL+ QV    +SIS     FRS +V+GG R R
Sbjct: 434 QRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQR 493

Query: 236 PQEDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFISP 295
            Q ++L   +D+++ TPGR    +  G +   +++  +LDE D +    FG D  +F + 
Sbjct: 494 TQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDIL----FGDD--EFEAA 553

Query: 296 LNHRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARHDFIKLS 355
           L +  +S      Q + VTAT+   +   + E F     +    +H ++++A  +F+   
Sbjct: 554 LQNLINSSPVTA-QYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVH-RVSNALEEFLVDC 613

Query: 356 GG------------ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL-----SEN 415
            G            +NK  ALLQ++E +    ++ ++FCN + + R V++        E 
Sbjct: 614 SGDDNAEKTPETAFQNKKTALLQIMEENPV--SKTIIFCNKIETCRKVENIFKRVDRKER 673

Query: 416 QISTVNYHGEVPAQKRVENLKKFKSD--DADCPTLVCTDLAARGLDLD-VDHVIMFDFPL 475
           Q+  + +H  +  + R+ N+++F S   + +   LVCTD A+RG+D   VDHV++FDFP 
Sbjct: 674 QLHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPR 733

Query: 476 NSIDYLHRTGRTAR-MGAKGKVTSLVAKKDDVLATRIEEAIRKNESLESL 504
           +  +Y+ R GRTAR    KGK    V  K   LA RI E   K   +  +
Sbjct: 734 DPSEYVRRVGRTARGARGKGKAFIFVVGKQVGLARRIIERNEKGHPVHDV 773

[Close]

BLAST of Sed0016760 vs. TAIR 10
Match: AT1G55150.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 184.5 bits (467), Expect = 2.7e-46
Identity = 123/366 (33.61%), Postives = 188/366 (51.37%), Query Frame = 0


Query: 109 KQRKKLVESFEELGLTEEVMGAVREMGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTL 168
           K   K V+SF ++G  + V+  V++ G   PT IQ  G P  + G  +I  + TGSGKTL
Sbjct: 92  KDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTL 151

Query: 169 AYLLPLVQLLRRDEEMFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVS 228
           +YLLP +  +         L     P  +VL PTREL+ Q+ + +      ++ ++T + 
Sbjct: 152 SYLLPAIVHVNAQP----MLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIY 211

Query: 229 GGGRIRPQEDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDI 288
           GG    PQ   L   +++V+ TPGR++  +E+ N     + YLVLDEAD M D GF P I
Sbjct: 212 GGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQI 271

Query: 289 RKFISPLNHRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIASARH 348
           RK +        SH     QT+  +AT  K V++L  +       +   S   K   A  
Sbjct: 272 RKIV--------SHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIR 331

Query: 349 DFIKLSGGENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGEV 408
             + +     K   L+++LE  +  G+R++VF +T      +   L  +    ++ HG+ 
Sbjct: 332 QIVDVISESQKYNKLVKLLE-DIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDK 391

Query: 409 PAQKRVENLKKFKSDDADCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTA 468
              +R   L +F+S  +  P +  TD+AARGLD+ DV +VI +DFP +  DY+HR GRT 
Sbjct: 392 SQAERDWVLSEFRSGKS--PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTG 442

Query: 469 RMGAKG 474
           R GAKG
Sbjct: 452 RAGAKG 442

[Close]

BLAST of Sed0016760 vs. TAIR 10
Match: AT3G01540.2 (DEAD box RNA helicase 1 )

HSP 1 Score: 182.2 bits (461), Expect = 1.3e-45
Identity = 124/375 (33.07%), Postives = 184/375 (49.07%), Query Frame = 0


Query: 117 SFEELGLTEEVMGAVREMGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTLAYLLP--- 176
           SFE  G   E++  V   G   PT IQ    P  + G  ++  + TGSGKTL YL+P   
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218

Query: 177 LVQLLRRDEEMFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRI 236
            +Q +R D  M         P  +VL PTREL+ Q+   +      +R   T + GG   
Sbjct: 219 HLQRIRNDSRM--------GPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPK 278

Query: 237 RPQEDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFIS 296
            PQ   L    D+VV TPGR+   +E   +    I YLVLDEAD M D GF P IRK + 
Sbjct: 279 GPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVK 338

Query: 297 PLNHRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIAS---ARH-D 356
            +  +         QT++ TAT  K V+K+  +       +   ++ + +A+    +H +
Sbjct: 339 EIPTKR--------QTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIE 398

Query: 357 FIKLSGGENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVP 416
            +     + +LE +L+  EP    G++V++FC+T      +   L+  Q      HG+  
Sbjct: 399 VVAPMEKQRRLEQILRSQEP----GSKVIIFCSTKRMCDQLTRNLT-RQFGAAAIHGDKS 458

Query: 417 AQKRVENLKKFKSDDADCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTAR 476
             +R   L +F+S     P LV TD+AARGLD+ D+  V+ +DFP    DY+HR GRT R
Sbjct: 459 QPERDNVLNQFRS--GRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGR 510

Query: 477 MGAKGKVTSLVAKKD 484
            GA G+  +    +D
Sbjct: 519 AGATGQAFTFFGDQD 510

[Close]

BLAST of Sed0016760 vs. TAIR 10
Match: AT3G01540.1 (DEAD box RNA helicase 1 )

HSP 1 Score: 182.2 bits (461), Expect = 1.3e-45
Identity = 124/375 (33.07%), Postives = 184/375 (49.07%), Query Frame = 0


Query: 117 SFEELGLTEEVMGAVREMGIEVPTEIQCIGIPAVLDGTSVILGSHTGSGKTLAYLLP--- 176
           SFE  G   E++  V   G   PT IQ    P  + G  ++  + TGSGKTL YL+P   
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218

Query: 177 LVQLLRRDEEMFGKLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRI 236
            +Q +R D  M         P  +VL PTREL+ Q+   +      +R   T + GG   
Sbjct: 219 HLQRIRNDSRM--------GPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPK 278

Query: 237 RPQEDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFIS 296
            PQ   L    D+VV TPGR+   +E   +    I YLVLDEAD M D GF P IRK + 
Sbjct: 279 GPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVK 338

Query: 297 PLNHRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSSLHKKIAS---ARH-D 356
            +  +         QT++ TAT  K V+K+  +       +   ++ + +A+    +H +
Sbjct: 339 EIPTKR--------QTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIE 398

Query: 357 FIKLSGGENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVP 416
            +     + +LE +L+  EP    G++V++FC+T      +   L+  Q      HG+  
Sbjct: 399 VVAPMEKQRRLEQILRSQEP----GSKVIIFCSTKRMCDQLTRNLT-RQFGAAAIHGDKS 458

Query: 417 AQKRVENLKKFKSDDADCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTAR 476
             +R   L +F+S     P LV TD+AARGLD+ D+  V+ +DFP    DY+HR GRT R
Sbjct: 459 QPERDNVLNQFRS--GRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGR 510

Query: 477 MGAKGKVTSLVAKKD 484
            GA G+  +    +D
Sbjct: 519 AGATGQAFTFFGDQD 510

The following BLAST results are available for this feature:

BLAST of Sed0016760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143665.1	4.7e-287	84.21	DEAD-box ATP-dependent RNA helicase 39 [Momordica charantia]	[more]
TYK14098.1	4.0e-286	83.41	DEAD-box ATP-dependent RNA helicase 39 [Cucumis melo var. makuwa]	[more]
XP_008461901.1	1.2e-285	83.39	PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Cucumis melo]	[more]
XP_004139692.1	4.4e-285	83.07	DEAD-box ATP-dependent RNA helicase 39 [Cucumis sativus] >XP_011659101.1 DEAD-bo...	[more]
XP_038898304.1	1.7e-284	84.22	DEAD-box ATP-dependent RNA helicase 39 [Benincasa hispida]	[more]

BLAST of Sed0016760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56X76	2.8e-218	66.35	DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana OX=3702 GN=RH39 P...	[more]
Q5VRY0	1.8e-204	64.06	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q0DVX2	6.4e-53	33.41	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q2U070	2.3e-50	34.28	ATP-dependent RNA helicase dbp2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 4...	[more]
Q5B0J9	1.1e-49	33.58	ATP-dependent RNA helicase dbp2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38...	[more]

BLAST of Sed0016760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CPE5	2.3e-287	84.21	DEAD-box ATP-dependent RNA helicase 39 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A5D3CSB8	1.9e-286	83.41	DEAD-box ATP-dependent RNA helicase 39 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3CFM7	5.6e-286	83.39	DEAD-box ATP-dependent RNA helicase 39 OS=Cucumis melo OX=3656 GN=LOC103500395 P...	[more]
A0A6J1F9C3	2.2e-282	83.00	DEAD-box ATP-dependent RNA helicase 39 isoform X2 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1IQ01	1.2e-280	82.84	DEAD-box ATP-dependent RNA helicase 39 OS=Cucurbita maxima OX=3661 GN=LOC1114771...	[more]

BLAST of Sed0016760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09730.1	2.0e-219	66.35	RH39	[more]
AT3G06980.1	8.1e-51	32.68	DEA(D/H)-box RNA helicase family protein	[more]
AT1G55150.1	2.7e-46	33.61	DEA(D/H)-box RNA helicase family protein	[more]
AT3G01540.2	1.3e-45	33.07	DEAD box RNA helicase 1	[more]
AT3G01540.1	1.3e-45	33.07	DEAD box RNA helicase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 135..354 e-value: 2.8E-46 score: 169.8
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 147..334 score: 26.881474
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 388..470 e-value: 3.0E-25 score: 99.9
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 359..470 e-value: 4.8E-24 score: 84.8
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 359..509 score: 16.728199
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 340..563 e-value: 1.2E-40 score: 141.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 79..335 e-value: 2.2E-67 score: 228.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 147..481
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 140..323 e-value: 2.1E-40 score: 138.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 534..569
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 623..641
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 505..533
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 505..641
None	No IPR available	PANTHER	PTHR47960	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	coord: 32..546
None	No IPR available	PANTHER	PTHR47960:SF19	DEAD-BOX ATP-DEPENDENT RNA HELICASE 39	coord: 32..546
None	No IPR available	CDD	cd00268	DEADc	coord: 127..326 e-value: 6.22483E-74 score: 233.873
None	No IPR available	CDD	cd18787	SF2_C_DEAD	coord: 347..479 e-value: 1.74603E-40 score: 142.261
IPR014014	RNA helicase, DEAD-box type, Q motif	PROSITE	PS51195	Q_MOTIF	coord: 116..144 score: 11.720348

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016760.1	Sed0016760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
biological_process	GO:1902775	mitochondrial large ribosomal subunit assembly
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0070180	large ribosomal subunit rRNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003724	RNA helicase activity
molecular_function	GO:0003676	nucleic acid binding