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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGACGAAGAAAGAAAGAGAAAAAAAAGTTCAAGGAAACGAAAGAAAAAGAGAAGTAAGGAAGTGTTTGAGTGGAGTCAAATGGAAGAGTTGAAGCTACTAAAGAAGTTGGTTGAGTTCAGTACGAATGGTATAGCCCACGAAGAACTATACCCGTTTTTGAGAAACGGGACCTCGTTAGCTGAGGCGTCGAAGATTGAAATATTCCACAAAATTCAAGAGCTGAAAAAGAAATATTTGGAGAAATTAAAGACGACGAGTAGTAATGAAGAAGAAGAGATTAGGGATGAGTGTTTTGAATTATCAAAGGTGGTTTGGATGAGTGAAACAACGACGACAACAACAACAACAGAAACAAGTCAAAGAAGAAGAAGTATAAGGAGTGAATCGTTGTCAGGTGCAATTGATGAATGGTATATGGACTGTTTGGAAGGGTTGGTTGAAAGTGAAGGGCTTGAATTGAATCTATTCACCCCATCTTTTTTGGAGCAAACCAAGGACAAGGCCCATCAATTGTTTCATCTTCATAATCACCATTTCTTAACCAAATCTAACTTGACCCAACAAATTGCTCAACTCAAGTACAATGTCAGTCAAAAGTTTCTAAATCCTACTAATTAG mRNA sequence ATGGACGAAGAAAGAAAGAGAAAAAAAAGTTCAAGGAAACGAAAGAAAAAGAGAAGTAAGGAAGTGTTTGAGTGGAGTCAAATGGAAGAGTTGAAGCTACTAAAGAAGTTGGTTGAGTTCAGTACGAATGGTATAGCCCACGAAGAACTATACCCGTTTTTGAGAAACGGGACCTCGTTAGCTGAGGCGTCGAAGATTGAAATATTCCACAAAATTCAAGAGCTGAAAAAGAAATATTTGGAGAAATTAAAGACGACGAGTAGTAATGAAGAAGAAGAGATTAGGGATGAGTGTTTTGAATTATCAAAGGTGGTTTGGATGAGTGAAACAACGACGACAACAACAACAACAGAAACAAGTCAAAGAAGAAGAAGTATAAGGAGTGAATCGTTGTCAGGTGCAATTGATGAATGGTATATGGACTGTTTGGAAGGGTTGGTTGAAAGTGAAGGGCTTGAATTGAATCTATTCACCCCATCTTTTTTGGAGCAAACCAAGGACAAGGCCCATCAATTGTTTCATCTTCATAATCACCATTTCTTAACCAAATCTAACTTGACCCAACAAATTGCTCAACTCAAGTACAATGTCAGTCAAAAGTTTCTAAATCCTACTAATTAG Coding sequence (CDS) ATGGACGAAGAAAGAAAGAGAAAAAAAAGTTCAAGGAAACGAAAGAAAAAGAGAAGTAAGGAAGTGTTTGAGTGGAGTCAAATGGAAGAGTTGAAGCTACTAAAGAAGTTGGTTGAGTTCAGTACGAATGGTATAGCCCACGAAGAACTATACCCGTTTTTGAGAAACGGGACCTCGTTAGCTGAGGCGTCGAAGATTGAAATATTCCACAAAATTCAAGAGCTGAAAAAGAAATATTTGGAGAAATTAAAGACGACGAGTAGTAATGAAGAAGAAGAGATTAGGGATGAGTGTTTTGAATTATCAAAGGTGGTTTGGATGAGTGAAACAACGACGACAACAACAACAACAGAAACAAGTCAAAGAAGAAGAAGTATAAGGAGTGAATCGTTGTCAGGTGCAATTGATGAATGGTATATGGACTGTTTGGAAGGGTTGGTTGAAAGTGAAGGGCTTGAATTGAATCTATTCACCCCATCTTTTTTGGAGCAAACCAAGGACAAGGCCCATCAATTGTTTCATCTTCATAATCACCATTTCTTAACCAAATCTAACTTGACCCAACAAATTGCTCAACTCAAGTACAATGTCAGTCAAAAGTTTCTAAATCCTACTAATTAG Protein sequence MDEERKRKKSSRKRKKKRSKEVFEWSQMEELKLLKKLVEFSTNGIAHEELYPFLRNGTSLAEASKIEIFHKIQELKKKYLEKLKTTSSNEEEEIRDECFELSKVVWMSETTTTTTTTETSQRRRSIRSESLSGAIDEWYMDCLEGLVESEGLELNLFTPSFLEQTKDKAHQLFHLHNHHFLTKSNLTQQIAQLKYNVSQKFLNPTN
Homology
BLAST of Sed0016183 vs. NCBI nr
Match: KAG6585881.1 (hypothetical protein SDJN03_18614, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 142.9 bits (359), Expect = 3.1e-30 Identity = 94/209 (44.98%), Postives = 129/209 (61.72%), Query Frame = 0
Query: 5 RKRKK--SSRKRKKKRSKEVFEWSQMEELKLLKKLVEFSTNGIAHEELYPFLRNGTSLAE 64
RKRK ++K++K +F+WS+ EEL LL KLVEFS N + HE+ YPFLR+G SLA+
Sbjct: 2 RKRKDIIKDTSTRQKKAKTLFQWSEGEELNLLNKLVEFSANNLDHEQFYPFLRSG-SLAD 61
Query: 65 ASKIEIFHKIQELKKKYLEKLKT-----TSSNEEEEIRDECFELSKVVWMSETTTTTTTT 124
KI+IF KIQ+LK+K+LEKL++ + +++E RDE FELS +W T T
Sbjct: 62 VPKIQIFDKIQQLKRKHLEKLESRVQMVSHADDERNERDESFELSNRLWGENEIETET-- 121
Query: 125 ETSQRRRSIRSESLSGAIDEWYMDCLEGLVESEGLELNLFTPSFLEQTKDKAHQLFHLHN 184
++ S S A D W M E L E L L+ FTPSFL+ TK + +L L N
Sbjct: 122 ---------QNVSTSKAFDAWSMSSFEALFEGHSLHLDAFTPSFLKATKKEMDELLDLQN 181
Query: 185 HHFLTKSNLTQQIAQLKYNVSQ-KFLNPT 206
HH L K+NL Q+AQLK++++Q +F N T
Sbjct: 182 HHSLIKANLKAQLAQLKHHLTQTRFENST 198
BLAST of Sed0016183 vs. NCBI nr
Match: KAA0054121.1 (hypothetical protein E6C27_scaffold131G00330 [Cucumis melo var. makuwa]) HSP 1 Score: 141.4 bits (355), Expect = 9.0e-30 Identity = 100/219 (45.66%), Postives = 132/219 (60.27%), Query Frame = 0
Query: 1 MDEERKRKKSS-RKRKKKRSKEVFEWSQMEELKLLKKLVEFSTNGIAHEELYPFLRNGTS 60
M+EE++R+KSS KKKR K +FEWS+ EEL LLKKLVEF++ I+ EE YPFLRNG S
Sbjct: 53 MEEEKERRKSSLGSEKKKRRKSLFEWSKGEELNLLKKLVEFNSKNISREEFYPFLRNG-S 112
Query: 61 LAEASKIEIFHKIQELKKKYLE-----------KLKTTSSNEEEEIRDECFELSKVVWMS 120
LAE SKI+IF KIQ+LK +YLE +K ++ + RDE FELS +W
Sbjct: 113 LAEVSKIQIFDKIQQLKSEYLENKLELRKMRKRNVKLEDDDDYNDKRDEGFELSNQLW-- 172
Query: 121 ETTTTTTTTETSQRRRSIRSESLSGAIDEWYMDCLEGLVESEGLELNLFTPSFLEQTKDK 180
E + R+ S++L +Y EG ES GL++ LF PSF + TK
Sbjct: 173 --------GEVDETERASNSKALEVCSRNYY----EGFFESCGLDVQLFDPSFHDATKKD 232
Query: 181 AHQLFHLHNHHFLTKSNLTQQIAQLKYNVSQ-KFLNPTN 207
LF+L +H L+K+ LT QI QLKY++ Q + NPTN
Sbjct: 233 IDHLFNLEHHVILSKAKLTAQILQLKYDLIQARVNNPTN 256
BLAST of Sed0016183 vs. NCBI nr
Match: KGN49711.1 (hypothetical protein Csa_018385 [Cucumis sativus]) HSP 1 Score: 94.0 bits (232), Expect = 1.6e-15 Identity = 77/211 (36.49%), Postives = 108/211 (51.18%), Query Frame = 0
Query: 1 MDEERK-RKKSSRKRKKKRSKEVFEWSQMEELKLLKKLVEFSTNGIAHEELYPFLRNGTS 60
M+E ++ RK+S+ KKKR K +FEWS+ EEL LLKKLVEF+T I+ EE YPFLRNG S
Sbjct: 1 MEEGKEGRKRSTGSGKKKRRKSLFEWSKGEELNLLKKLVEFNTKNISREEFYPFLRNG-S 60
Query: 61 LAEASKIEIFHKIQELKKKYLEK-----------LKTTSSNEEEEIRDECFELSKVVWMS 120
LAE S+ +IF KIQELK++YL++ +K ++ RDE FELS VW
Sbjct: 61 LAEVSRTQIFEKIQELKREYLKQKLELRKMRKRNVKMEDDDDFNNKRDEGFELSNEVW-- 120
Query: 121 ETTTTTTTTETSQRRRSIRSESLSGAIDEWYMDCLEGLVESEGLELNLFTPSFLEQTKDK 180
G +DE + ++E + K
Sbjct: 121 ------------------------GKVDETERASISKVLE--------------DAAKKD 170
Query: 181 AHQLFHLHNHHFLTKSNLTQQIAQLKYNVSQ 200
+LF+L + FL KS L ++ +LK ++ Q
Sbjct: 181 IDRLFNLEHQAFLFKSKLVSKLVKLKNDIIQ 170
BLAST of Sed0016183 vs. ExPASy TrEMBL
Match: A0A5A7UKP8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00330 PE=3 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 4.4e-30 Identity = 100/219 (45.66%), Postives = 132/219 (60.27%), Query Frame = 0
Query: 1 MDEERKRKKSS-RKRKKKRSKEVFEWSQMEELKLLKKLVEFSTNGIAHEELYPFLRNGTS 60
M+EE++R+KSS KKKR K +FEWS+ EEL LLKKLVEF++ I+ EE YPFLRNG S
Sbjct: 53 MEEEKERRKSSLGSEKKKRRKSLFEWSKGEELNLLKKLVEFNSKNISREEFYPFLRNG-S 112
Query: 61 LAEASKIEIFHKIQELKKKYLE-----------KLKTTSSNEEEEIRDECFELSKVVWMS 120
LAE SKI+IF KIQ+LK +YLE +K ++ + RDE FELS +W
Sbjct: 113 LAEVSKIQIFDKIQQLKSEYLENKLELRKMRKRNVKLEDDDDYNDKRDEGFELSNQLW-- 172
Query: 121 ETTTTTTTTETSQRRRSIRSESLSGAIDEWYMDCLEGLVESEGLELNLFTPSFLEQTKDK 180
E + R+ S++L +Y EG ES GL++ LF PSF + TK
Sbjct: 173 --------GEVDETERASNSKALEVCSRNYY----EGFFESCGLDVQLFDPSFHDATKKD 232
Query: 181 AHQLFHLHNHHFLTKSNLTQQIAQLKYNVSQ-KFLNPTN 207
LF+L +H L+K+ LT QI QLKY++ Q + NPTN
Sbjct: 233 IDHLFNLEHHVILSKAKLTAQILQLKYDLIQARVNNPTN 256
BLAST of Sed0016183 vs. ExPASy TrEMBL
Match: A0A0A0KPQ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G078280 PE=3 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 8.0e-16 Identity = 77/211 (36.49%), Postives = 108/211 (51.18%), Query Frame = 0
Query: 1 MDEERK-RKKSSRKRKKKRSKEVFEWSQMEELKLLKKLVEFSTNGIAHEELYPFLRNGTS 60
M+E ++ RK+S+ KKKR K +FEWS+ EEL LLKKLVEF+T I+ EE YPFLRNG S
Sbjct: 1 MEEGKEGRKRSTGSGKKKRRKSLFEWSKGEELNLLKKLVEFNTKNISREEFYPFLRNG-S 60
Query: 61 LAEASKIEIFHKIQELKKKYLEK-----------LKTTSSNEEEEIRDECFELSKVVWMS 120
LAE S+ +IF KIQELK++YL++ +K ++ RDE FELS VW
Sbjct: 61 LAEVSRTQIFEKIQELKREYLKQKLELRKMRKRNVKMEDDDDFNNKRDEGFELSNEVW-- 120
Query: 121 ETTTTTTTTETSQRRRSIRSESLSGAIDEWYMDCLEGLVESEGLELNLFTPSFLEQTKDK 180
G +DE + ++E + K
Sbjct: 121 ------------------------GKVDETERASISKVLE--------------DAAKKD 170
Query: 181 AHQLFHLHNHHFLTKSNLTQQIAQLKYNVSQ 200
+LF+L + FL KS L ++ +LK ++ Q
Sbjct: 181 IDRLFNLEHQAFLFKSKLVSKLVKLKNDIIQ 170
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG6585881.1 | 3.1e-30 | 44.98 | hypothetical protein SDJN03_18614, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAA0054121.1 | 9.0e-30 | 45.66 | hypothetical protein E6C27_scaffold131G00330 [Cucumis melo var. makuwa] | [more] |
| KGN49711.1 | 1.6e-15 | 36.49 | hypothetical protein Csa_018385 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UKP8 | 4.4e-30 | 45.66 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A0A0KPQ5 | 8.0e-16 | 36.49 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G078280 PE=3 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR007592 | GLABROUS1 enhancer-binding protein family | PFAM | PF04504 | DUF573 | coord: 25..106
e-value: 6.5E-10
score: 39.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..20 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
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