Sed0016121 (gene) Chayote v1

Overview


Name	Sed0016121
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Vacuolar protein sorting-associated protein 28 homolog
Location	LG10: 1999581 .. 2001353 (-)
RNA-Seq Expression	Sed0016121
Synteny	Sed0016121

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGACATTTTCGCAGACCTTTACGCCATTATCAACGCCGCCGAAAAGCTCGAAAAGGCATACATCCGTGACCTAATCCCTTCCTCCGATTACGAGACCGAATGCTTCGAACTCATCGCCCATTTCAAAACCCTAGCCTCGACGCTCACGGACTCCGTCCCAACCGTCGAGCGATTGGCAGAATCTTACAAAATCGAGTGCCCGGCGGCGATTAACCAGGCCGCCGCCGCTGCCTCCTCCACCGCCTCGGCCGCGATTGTGGCGGAGTGTGTTCAGAACTTCATTACGGCTATGGATTCGGTTAAATTGAATATGGTGGCTGTGGATCAGGTGCATCCGTTGCTATTGGATTTATTGGGTTCTCTGAAGAAATTGAGTATTCTTGGGGCGGATTTTGAAGGGAAGAAGAAGATGAGGGAGTGGCTTGGCCTTTCGAAAACGGGGGCGGGGGAGGAGTTGGCGGAGCAGCAGTCTCGGGAGCTTCACTTTGATCTTGAATCTTCTTATAATTCGTTCATGGCGGCTTTGCCTACTGCTGGTGCTTGAATGTTAATGGTAATCTCTTTCTGTGTGTGTATATATATATATTAGAGCTTGTTGATTTTGTGTACTGATTACTGTGTTAAGGTCACTTAACTTCATGAATTGTGATGCTATTTGCTGTGATATGGATGCCTGTTGAAGTTCATGAACTTTTTTGTTTTCTTTTTTCTCAATATCATATTCAGTTTGAGAGTTCTTTTCAATTCCCATTGCTGGTTTAATTTGTTTGGAAATTGGTGTCTTGAATTGGATATTAATTCTAACATTGGGTTCGGGATTCAAAAGATTATGAGTTCAATCTATCTATTTAGATCACATAATCGGTTTTTCTATGATATCCAAATGTTATATGGAAAGATTGAATGTCTAGTGAAACTAATTGATTTTTGCGTGAGCTTAACACTCACCAAAAAGTTGTGAAAATAATTCTGATAGTTGAAAGATTTCTTTTACTTACGGAAGCAGAGGAAATTGAATAATTACACTGTAATGTTATAGGTCTTGGCTTGTCCTAATGCTTGACCCATGATTTTTTGAACTAGATAGGGTTGCTCTATTACTAATTAGGCTGCCATTCCAAATTCATGGGTTTGTAATGTAATAGTACTTTTTTCAGTAACCTACTACTTTTCATCAAAACATTGTCTGAATTATGCATGTGATTCTGATTCAGATTGTGGTAAGAAAAATCTTACTTTAAAACCAGTAGAAAGTGGAATTTTTTGGGTTACTTTTGGGGTATGGGTTTTCACTTTTCAGTTCCAGAACTGATGGGCTAAAACTTTAATACATTGAAACTGTAATGTGCAGTGAGACACAATTAAGTACAGTTTGAAATAACATTGAATTTCAAACTTAATGTAACCAAACATTCTCAAACACCAATCGTTGAACCCTAAACCTTTATGCCCATTTCTGAATCTCATACTTCCTATCATTCCAAACAAAGACAATATTGTTGTTATTAAGTTTCTGTTCAAACACTCAATTTTTCCTTGAAGGATTAGATTATACTTGAGGATACGAATATTATATCATGAGGTTTGTTATGATTCTACAATATTATAGTTTTCTCGAAATCTTTGAAGCTGTCATATAATATACATAATAAGGATTAGAATATGTGTTCCGAAAAAAAAAATCATTCCTTAAACAGAAAAGGGTGCAGATTCCATTGGAGTGCGCTACACAAGTCCAATAATTGCTATGGAAAAAGTGAAAGGATAA

mRNA sequence

ATGTACGACATTTTCGCAGACCTTTACGCCATTATCAACGCCGCCGAAAAGCTCGAAAAGGCATACATCCGTGACCTAATCCCTTCCTCCGATTACGAGACCGAATGCTTCGAACTCATCGCCCATTTCAAAACCCTAGCCTCGACGCTCACGGACTCCGTCCCAACCGTCGAGCGATTGGCAGAATCTTACAAAATCGAGTGCCCGGCGGCGATTAACCAGGCCGCCGCCGCTGCCTCCTCCACCGCCTCGGCCGCGATTGTGGCGGAGTGTGTTCAGAACTTCATTACGGCTATGGATTCGGTTAAATTGAATATGGTGGCTGTGGATCAGGTGCATCCGTTGCTATTGGATTTATTGGGTTCTCTGAAGAAATTGAGTATTCTTGGGGCGGATTTTGAAGGGAAGAAGAAGATGAGGGAGTGGCTTGGCCTTTCGAAAACGGGGGCGGGGGAGGAGTTGGCGGAGCAGCAGTCTCGGGAGCTTCACTTTGATCTTGAATCTTCTTATAATTCGTTCATGGCGGCTTTGCCTACTGCTGTACTTTTTTCAGTAACCTACTACTTTTCATCAAAACATTGTCTGAATTATGCATGTGATTCTGATTCAGATTGTGGTAAGAAAAATCTTACTTTAAAACCAGTAGAAAGTGGAATTTTTTGGGGTGCAGATTCCATTGGAGTGCGCTACACAAGTCCAATAATTGCTATGGAAAAAGTGAAAGGATAA

Coding sequence (CDS)

ATGTACGACATTTTCGCAGACCTTTACGCCATTATCAACGCCGCCGAAAAGCTCGAAAAGGCATACATCCGTGACCTAATCCCTTCCTCCGATTACGAGACCGAATGCTTCGAACTCATCGCCCATTTCAAAACCCTAGCCTCGACGCTCACGGACTCCGTCCCAACCGTCGAGCGATTGGCAGAATCTTACAAAATCGAGTGCCCGGCGGCGATTAACCAGGCCGCCGCCGCTGCCTCCTCCACCGCCTCGGCCGCGATTGTGGCGGAGTGTGTTCAGAACTTCATTACGGCTATGGATTCGGTTAAATTGAATATGGTGGCTGTGGATCAGGTGCATCCGTTGCTATTGGATTTATTGGGTTCTCTGAAGAAATTGAGTATTCTTGGGGCGGATTTTGAAGGGAAGAAGAAGATGAGGGAGTGGCTTGGCCTTTCGAAAACGGGGGCGGGGGAGGAGTTGGCGGAGCAGCAGTCTCGGGAGCTTCACTTTGATCTTGAATCTTCTTATAATTCGTTCATGGCGGCTTTGCCTACTGCTGTACTTTTTTCAGTAACCTACTACTTTTCATCAAAACATTGTCTGAATTATGCATGTGATTCTGATTCAGATTGTGGTAAGAAAAATCTTACTTTAAAACCAGTAGAAAGTGGAATTTTTTGGGGTGCAGATTCCATTGGAGTGCGCTACACAAGTCCAATAATTGCTATGGAAAAAGTGAAAGGATAA

Protein sequence

MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERLAESYKIECPAAINQAAAAASSTASAAIVAECVQNFITAMDSVKLNMVAVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREWLGLSKTGAGEELAEQQSRELHFDLESSYNSFMAALPTAVLFSVTYYFSSKHCLNYACDSDSDCGKKNLTLKPVESGIFWGADSIGVRYTSPIIAMEKVKG

Homology

[Close]

BLAST of Sed0016121 vs. NCBI nr
Match: XP_022142298.1 (vacuolar protein sorting-associated protein 28 homolog 2 [Momordica charantia] >XP_022142299.1 vacuolar protein sorting-associated protein 28 homolog 2 [Momordica charantia])

HSP 1 Score: 271.9 bits (694), Expect = 5.2e-69
Identity = 148/194 (76.29%), Postives = 165/194 (85.05%), Query Frame = 0


Query: 1   MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERL 60
           MYD FA+LYAII A EKLEKAYIRD+IPSSDYETECF+LIAHFKTLASTL D+VP++ER 
Sbjct: 14  MYDNFAELYAIIKATEKLEKAYIRDIIPSSDYETECFKLIAHFKTLASTLKDTVPSIERF 73

Query: 61  AESYKIECPAAIN-------------QAAAAASSTASAAIVAECVQNFITAMDSVKLNMV 120
           A++YK++CPAAIN             +AAAAAS+T SAAIVAECVQNFITAMDS+KLNMV
Sbjct: 74  ADTYKMDCPAAINRLVNSGVPATVEHRAAAAASATTSAAIVAECVQNFITAMDSLKLNMV 133

Query: 121 AVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREWLG-LSKTGAGEELAEQQSRELHFDL 180
           AVDQVHPLL DL  SL KL+IL ADFEGK KMREWLG LSK GA +EL EQQ+R+LHFDL
Sbjct: 134 AVDQVHPLLSDLSASLNKLTILPADFEGKTKMREWLGRLSKMGAADELTEQQARQLHFDL 193

[Close]

BLAST of Sed0016121 vs. NCBI nr
Match: XP_023544381.1 (vacuolar protein sorting-associated protein 28 homolog 2 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544382.1 vacuolar protein sorting-associated protein 28 homolog 2 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 269.2 bits (687), Expect = 3.4e-68
Identity = 145/194 (74.74%), Postives = 164/194 (84.54%), Query Frame = 0


Query: 1   MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERL 60
           MYD FA+LYAII A EKLEKAY+RD+IPSSDYETECF+LIAHFKTLASTL D+VP++ER 
Sbjct: 50  MYDNFAELYAIIKATEKLEKAYVRDIIPSSDYETECFKLIAHFKTLASTLKDTVPSIERF 109

Query: 61  AESYKIECPAAIN-------------QAAAAASSTASAAIVAECVQNFITAMDSVKLNMV 120
           A++YK++CPAAIN             +A+AAASST SAAIVAECVQNFITAMDS+KLNMV
Sbjct: 110 ADTYKMDCPAAINRLVISGVPATVEHRASAAASSTTSAAIVAECVQNFITAMDSLKLNMV 169

Query: 121 AVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREWLG-LSKTGAGEELAEQQSRELHFDL 180
           AVDQVHPLL DL  SL KL+IL  DFEGK KM+EWLG LSK GA +EL EQQ+R+LHFDL
Sbjct: 170 AVDQVHPLLSDLFASLNKLTILPPDFEGKTKMKEWLGRLSKMGAADELTEQQARQLHFDL 229

[Close]

BLAST of Sed0016121 vs. NCBI nr
Match: KAG6603719.1 (Vacuolar protein sorting-associated protein 28-like 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 269.2 bits (687), Expect = 3.4e-68
Identity = 145/194 (74.74%), Postives = 164/194 (84.54%), Query Frame = 0


Query: 1   MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERL 60
           MYD FA+LYAII A EKLEKAY+RD+IPSSDYETECF+LIAHFKTLASTL D+VP++ER 
Sbjct: 14  MYDNFAELYAIIKATEKLEKAYVRDIIPSSDYETECFKLIAHFKTLASTLKDTVPSIERF 73

Query: 61  AESYKIECPAAIN-------------QAAAAASSTASAAIVAECVQNFITAMDSVKLNMV 120
           A++YK++CPAAIN             +A+AAASST SAAIVAECVQNFITAMDS+KLNMV
Sbjct: 74  ADTYKMDCPAAINRLVISGVPATVEHRASAAASSTTSAAIVAECVQNFITAMDSLKLNMV 133

Query: 121 AVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREWLG-LSKTGAGEELAEQQSRELHFDL 180
           AVDQVHPLL DL  SL KL+IL  DFEGK KM+EWLG LSK GA +EL EQQ+R+LHFDL
Sbjct: 134 AVDQVHPLLSDLFASLNKLTILPPDFEGKTKMKEWLGRLSKMGAADELTEQQARQLHFDL 193

[Close]

BLAST of Sed0016121 vs. NCBI nr
Match: XP_022950166.1 (vacuolar protein sorting-associated protein 28 homolog 2 [Cucurbita moschata] >XP_022950167.1 vacuolar protein sorting-associated protein 28 homolog 2 [Cucurbita moschata] >XP_023544383.1 vacuolar protein sorting-associated protein 28 homolog 2 isoform X3 [Cucurbita pepo subsp. pepo] >XP_023544384.1 vacuolar protein sorting-associated protein 28 homolog 2 isoform X3 [Cucurbita pepo subsp. pepo] >KAG7033897.1 Vacuolar protein sorting-associated protein 28-like 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269.2 bits (687), Expect = 3.4e-68
Identity = 145/194 (74.74%), Postives = 164/194 (84.54%), Query Frame = 0


Query: 1   MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERL 60
           MYD FA+LYAII A EKLEKAY+RD+IPSSDYETECF+LIAHFKTLASTL D+VP++ER 
Sbjct: 14  MYDNFAELYAIIKATEKLEKAYVRDIIPSSDYETECFKLIAHFKTLASTLKDTVPSIERF 73

Query: 61  AESYKIECPAAIN-------------QAAAAASSTASAAIVAECVQNFITAMDSVKLNMV 120
           A++YK++CPAAIN             +A+AAASST SAAIVAECVQNFITAMDS+KLNMV
Sbjct: 74  ADTYKMDCPAAINRLVISGVPATVEHRASAAASSTTSAAIVAECVQNFITAMDSLKLNMV 133

Query: 121 AVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREWLG-LSKTGAGEELAEQQSRELHFDL 180
           AVDQVHPLL DL  SL KL+IL  DFEGK KM+EWLG LSK GA +EL EQQ+R+LHFDL
Sbjct: 134 AVDQVHPLLSDLFASLNKLTILPPDFEGKTKMKEWLGRLSKMGAADELTEQQARQLHFDL 193

[Close]

BLAST of Sed0016121 vs. NCBI nr
Match: XP_008439898.1 (PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Cucumis melo] >XP_016899348.1 PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Cucumis melo] >KAA0052713.1 vacuolar protein sorting-associated protein 28-like protein 2 [Cucumis melo var. makuwa] >TYK13111.1 vacuolar protein sorting-associated protein 28-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 266.2 bits (679), Expect = 2.8e-67
Identity = 145/194 (74.74%), Postives = 163/194 (84.02%), Query Frame = 0


Query: 1   MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERL 60
           MYD FA+LYAII A EKLEKAYIRD+I SSDYETECF+LIAHFKTLASTL D+VP++ER 
Sbjct: 14  MYDNFAELYAIIKATEKLEKAYIRDIISSSDYETECFKLIAHFKTLASTLKDTVPSIERF 73

Query: 61  AESYKIECPAAIN-------------QAAAAASSTASAAIVAECVQNFITAMDSVKLNMV 120
           A++YK++CPAAIN             +AAAAAS+T SAAIVAECVQNFITAMDS+KLNMV
Sbjct: 74  ADTYKMDCPAAINRLVITGVPATVEHRAAAAASATTSAAIVAECVQNFITAMDSLKLNMV 133

Query: 121 AVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREWLG-LSKTGAGEELAEQQSRELHFDL 180
           AVDQVHPLL DL  SL KL+IL  DFEGK KM+EWLG LSK GA +EL EQQ+R+LHFDL
Sbjct: 134 AVDQVHPLLSDLAASLNKLTILPPDFEGKTKMKEWLGRLSKMGAADELTEQQARQLHFDL 193

[Close]

BLAST of Sed0016121 vs. ExPASy Swiss-Prot
Match: O65421 (Vacuolar protein sorting-associated protein 28 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=VPS28-1 PE=1 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 7.0e-61
Identity = 129/194 (66.49%), Postives = 156/194 (80.41%), Query Frame = 0


Query: 1   MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERL 60
           MY+ FA+LYAII A EKLEKAYIRDLI  S+YETEC +LI HFKTL+++L D VP +ER 
Sbjct: 14  MYENFAELYAIIKATEKLEKAYIRDLISPSEYETECQKLIVHFKTLSASLKDMVPNIERF 73

Query: 61  AESYKIECPAAI-------------NQAAAAASSTASAAIVAECVQNFITAMDSVKLNMV 120
           AE+YK++C AA+             ++AAA+AS+++SA++VAECVQNFIT+MDS+KLNMV
Sbjct: 74  AETYKMDCSAAVYRLVTSGVPATVEHRAAASASTSSSASVVAECVQNFITSMDSLKLNMV 133

Query: 121 AVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREW-LGLSKTGAGEELAEQQSRELHFDL 180
           AVDQV+PLL DL  SL KLSIL  DFEGK KM+EW L LSK GA +EL EQQ+R+LHFDL
Sbjct: 134 AVDQVYPLLSDLSASLNKLSILPPDFEGKIKMKEWLLRLSKMGASDELTEQQARQLHFDL 193

[Close]

BLAST of Sed0016121 vs. ExPASy Swiss-Prot
Match: Q9S9T7 (Vacuolar protein sorting-associated protein 28 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=VPS28-2 PE=1 SV=2)

HSP 1 Score: 235.3 bits (599), Expect = 7.0e-61
Identity = 129/194 (66.49%), Postives = 155/194 (79.90%), Query Frame = 0


Query: 1   MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERL 60
           MY+ FA+L+AII A EKLEKAYIRDLI  S+YE+EC +LI HFKTL++TL D+VP +ER 
Sbjct: 15  MYENFAELFAIIKATEKLEKAYIRDLINPSEYESECQKLIVHFKTLSATLKDTVPNIERF 74

Query: 61  AESYKIECPAAI-------------NQAAAAASSTASAAIVAECVQNFITAMDSVKLNMV 120
           A++YK++CPAA+             ++A  AAS++ SA+IVAECVQNFIT+MDS+KLNMV
Sbjct: 75  ADTYKMDCPAALYRLVTSGLPATVEHRATVAASTSNSASIVAECVQNFITSMDSLKLNMV 134

Query: 121 AVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREWLG-LSKTGAGEELAEQQSRELHFDL 180
           AVDQV+PLL DL  SL KLSIL  DFEGK KM+EWL  LSK GA +EL EQQSR+LHFDL
Sbjct: 135 AVDQVYPLLSDLSASLNKLSILPPDFEGKTKMKEWLSRLSKMGAADELTEQQSRQLHFDL 194

[Close]

BLAST of Sed0016121 vs. ExPASy Swiss-Prot
Match: Q54NF1 (Vacuolar protein sorting-associated protein 28 OS=Dictyostelium discoideum OX=44689 GN=vps28 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.5e-31
Identity = 82/191 (42.93%), Postives = 117/191 (61.26%), Query Frame = 0


Query: 1   MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERL 60
           MY+  A+LY+II   E LEKAYIRD +   DY T C +LIA FK+  + L D V  V + 
Sbjct: 96  MYENLAELYSIIKVTEHLEKAYIRDDVSPKDYTTACSKLIAQFKSSQTLLKDQVSNVGQF 155

Query: 61  AESYKIECPAAINQAA-------------AAASSTASAAIVAECVQNFITAMDSVKLNMV 120
            + Y + C AA ++                +++ +A A  VAE VQ FIT MDS++L +V
Sbjct: 156 MKDYDLNCKAAFDRLVIKGFPSTLEHNTNESSTDSAMAKNVAEAVQLFITTMDSIRLKLV 215

Query: 121 AVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREWLG-LSKTGAGEELAEQQSRELHFDL 178
           +VD ++PLL DL+ SL K   LG  FEGK+K++ W+  L++  A +EL + QSR+L FDL
Sbjct: 216 SVDGIYPLLSDLMESLNKNQWLGPTFEGKEKIKNWISILNQMKATDELDDDQSRQLLFDL 275

[Close]

BLAST of Sed0016121 vs. ExPASy Swiss-Prot
Match: Q9V359 (Vacuolar protein sorting-associated protein 28 homolog OS=Drosophila melanogaster OX=7227 GN=Vps28 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.3e-24
Identity = 67/180 (37.22%), Postives = 104/180 (57.78%), Query Frame = 0


Query: 2   YDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFK-TLASTLTDSVPTVERL 61
           YD  ADLYAIIN  ++LEKAYIRD I   +Y   C + +  +K        D  P+VE  
Sbjct: 24  YDNMADLYAIINTIQQLEKAYIRDCITPQEYTAACSKYLVQYKVAFKQVQCDEFPSVETF 83

Query: 62  AESYKIECPAAINQAAAAASSTA------SAAIVAECVQNFITAMDSVKLNMVAVDQVHP 121
            + ++++CPAA+ +       T       ++  +AE V  FIT MD ++L +  +D + P
Sbjct: 84  VKKFRLDCPAALERIREDRPITIRDDKGNTSKCIAEIVSLFITIMDKLRLQINTMDALQP 143

Query: 122 LLLDLLGSLKKLSILGADFEGKKKMREWLG-LSKTGAGEELAEQQSRELHFDLESSYNSF 174
            + DL  ++ +LS++  DF+ K K+ +WLG L++  A +EL+E Q R+  FDLES+Y  F
Sbjct: 144 DVKDLADNMNRLSLIPEDFDAKLKVEKWLGSLNEMQASDELSEGQVRQFLFDLESAYADF 203

[Close]

BLAST of Sed0016121 vs. ExPASy Swiss-Prot
Match: A8XWB7 (Vacuolar protein sorting-associated protein 28 homolog OS=Caenorhabditis briggsae OX=6238 GN=vps-28 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.5e-21
Identity = 61/179 (34.08%), Postives = 103/179 (57.54%), Query Frame = 0


Query: 6   ADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERLAESYK 65
           ++L+A++NA E LEK + RD + + +Y+TECF+LI  +K +   L     ++E  A+ Y+
Sbjct: 27  SELFAVLNALEHLEKMFSRDHVTADEYKTECFKLIDQYK-VTMRLVHGATSIEEFAKKYR 86

Query: 66  IECPAAINQAAAAASSTAS------AAIVAECVQNFITAMDSVKLNMVAVDQVHPLLLDL 125
           + CPAAI +       T           +A  V+ FIT +DS++LN  AVD ++P+L DL
Sbjct: 87  LHCPAAIERIREGRPITVKDDQGNVLKHIASIVEQFITFLDSLRLNTRAVDDLYPVLDDL 146

Query: 126 LGSLKKLSILGADFEGKKKMREWLG-LSKTGAGEELAEQQSRELHFDLESSYNSFMAAL 178
             ++   S +  D     K+++W   LS   A +E+++ ++R++ FD E +Y SF  AL
Sbjct: 147 YNAINSTSRVPIDANVTTKVKKWHDRLSSMAATDEISDDEARQMIFDTEGAYQSFQKAL 204

[Close]

BLAST of Sed0016121 vs. ExPASy TrEMBL
Match: A0A6J1CL71 (Vacuolar protein sorting-associated protein 28 homolog OS=Momordica charantia OX=3673 GN=LOC111012452 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 2.5e-69
Identity = 148/194 (76.29%), Postives = 165/194 (85.05%), Query Frame = 0


Query: 1   MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERL 60
           MYD FA+LYAII A EKLEKAYIRD+IPSSDYETECF+LIAHFKTLASTL D+VP++ER 
Sbjct: 14  MYDNFAELYAIIKATEKLEKAYIRDIIPSSDYETECFKLIAHFKTLASTLKDTVPSIERF 73

Query: 61  AESYKIECPAAIN-------------QAAAAASSTASAAIVAECVQNFITAMDSVKLNMV 120
           A++YK++CPAAIN             +AAAAAS+T SAAIVAECVQNFITAMDS+KLNMV
Sbjct: 74  ADTYKMDCPAAINRLVNSGVPATVEHRAAAAASATTSAAIVAECVQNFITAMDSLKLNMV 133

Query: 121 AVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREWLG-LSKTGAGEELAEQQSRELHFDL 180
           AVDQVHPLL DL  SL KL+IL ADFEGK KMREWLG LSK GA +EL EQQ+R+LHFDL
Sbjct: 134 AVDQVHPLLSDLSASLNKLTILPADFEGKTKMREWLGRLSKMGAADELTEQQARQLHFDL 193

[Close]

BLAST of Sed0016121 vs. ExPASy TrEMBL
Match: A0A6J1GE20 (Vacuolar protein sorting-associated protein 28 homolog OS=Cucurbita moschata OX=3662 GN=LOC111453341 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.6e-68
Identity = 145/194 (74.74%), Postives = 164/194 (84.54%), Query Frame = 0


Query: 1   MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERL 60
           MYD FA+LYAII A EKLEKAY+RD+IPSSDYETECF+LIAHFKTLASTL D+VP++ER 
Sbjct: 14  MYDNFAELYAIIKATEKLEKAYVRDIIPSSDYETECFKLIAHFKTLASTLKDTVPSIERF 73

Query: 61  AESYKIECPAAIN-------------QAAAAASSTASAAIVAECVQNFITAMDSVKLNMV 120
           A++YK++CPAAIN             +A+AAASST SAAIVAECVQNFITAMDS+KLNMV
Sbjct: 74  ADTYKMDCPAAINRLVISGVPATVEHRASAAASSTTSAAIVAECVQNFITAMDSLKLNMV 133

Query: 121 AVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREWLG-LSKTGAGEELAEQQSRELHFDL 180
           AVDQVHPLL DL  SL KL+IL  DFEGK KM+EWLG LSK GA +EL EQQ+R+LHFDL
Sbjct: 134 AVDQVHPLLSDLFASLNKLTILPPDFEGKTKMKEWLGRLSKMGAADELTEQQARQLHFDL 193

[Close]

BLAST of Sed0016121 vs. ExPASy TrEMBL
Match: A0A6J1IJT1 (Vacuolar protein sorting-associated protein 28 homolog OS=Cucurbita maxima OX=3661 GN=LOC111478075 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.4e-67
Identity = 144/194 (74.23%), Postives = 163/194 (84.02%), Query Frame = 0


Query: 1   MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERL 60
           MYD FA+LYAII A EKLEKAY+RD+I SSDYETECF+LIAHFKTLASTL D+VP++ER 
Sbjct: 14  MYDNFAELYAIIKATEKLEKAYVRDIISSSDYETECFKLIAHFKTLASTLKDTVPSIERF 73

Query: 61  AESYKIECPAAIN-------------QAAAAASSTASAAIVAECVQNFITAMDSVKLNMV 120
           A++YK++CPAAIN             +A+AAASST SAAIVAECVQNFITAMDS+KLNMV
Sbjct: 74  ADTYKMDCPAAINRLVISGVPATVEHRASAAASSTTSAAIVAECVQNFITAMDSLKLNMV 133

Query: 121 AVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREWLG-LSKTGAGEELAEQQSRELHFDL 180
           AVDQVHPLL DL  SL KL+IL  DFEGK KM+EWLG LSK GA +EL EQQ+R+LHFDL
Sbjct: 134 AVDQVHPLLSDLFASLNKLTILPPDFEGKTKMKEWLGRLSKMGAADELTEQQARQLHFDL 193

[Close]

BLAST of Sed0016121 vs. ExPASy TrEMBL
Match: A0A1S3B0K8 (Vacuolar protein sorting-associated protein 28 homolog OS=Cucumis melo OX=3656 GN=LOC103484547 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.4e-67
Identity = 145/194 (74.74%), Postives = 163/194 (84.02%), Query Frame = 0


Query: 1   MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERL 60
           MYD FA+LYAII A EKLEKAYIRD+I SSDYETECF+LIAHFKTLASTL D+VP++ER 
Sbjct: 14  MYDNFAELYAIIKATEKLEKAYIRDIISSSDYETECFKLIAHFKTLASTLKDTVPSIERF 73

Query: 61  AESYKIECPAAIN-------------QAAAAASSTASAAIVAECVQNFITAMDSVKLNMV 120
           A++YK++CPAAIN             +AAAAAS+T SAAIVAECVQNFITAMDS+KLNMV
Sbjct: 74  ADTYKMDCPAAINRLVITGVPATVEHRAAAAASATTSAAIVAECVQNFITAMDSLKLNMV 133

Query: 121 AVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREWLG-LSKTGAGEELAEQQSRELHFDL 180
           AVDQVHPLL DL  SL KL+IL  DFEGK KM+EWLG LSK GA +EL EQQ+R+LHFDL
Sbjct: 134 AVDQVHPLLSDLAASLNKLTILPPDFEGKTKMKEWLGRLSKMGAADELTEQQARQLHFDL 193

[Close]

BLAST of Sed0016121 vs. ExPASy TrEMBL
Match: A0A5D3CMS3 (Vacuolar protein sorting-associated protein 28 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007210 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.4e-67
Identity = 145/194 (74.74%), Postives = 163/194 (84.02%), Query Frame = 0


Query: 1   MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERL 60
           MYD FA+LYAII A EKLEKAYIRD+I SSDYETECF+LIAHFKTLASTL D+VP++ER 
Sbjct: 14  MYDNFAELYAIIKATEKLEKAYIRDIISSSDYETECFKLIAHFKTLASTLKDTVPSIERF 73

Query: 61  AESYKIECPAAIN-------------QAAAAASSTASAAIVAECVQNFITAMDSVKLNMV 120
           A++YK++CPAAIN             +AAAAAS+T SAAIVAECVQNFITAMDS+KLNMV
Sbjct: 74  ADTYKMDCPAAINRLVITGVPATVEHRAAAAASATTSAAIVAECVQNFITAMDSLKLNMV 133

Query: 121 AVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREWLG-LSKTGAGEELAEQQSRELHFDL 180
           AVDQVHPLL DL  SL KL+IL  DFEGK KM+EWLG LSK GA +EL EQQ+R+LHFDL
Sbjct: 134 AVDQVHPLLSDLAASLNKLTILPPDFEGKTKMKEWLGRLSKMGAADELTEQQARQLHFDL 193

[Close]

BLAST of Sed0016121 vs. TAIR 10
Match: AT4G05000.1 (Vacuolar protein sorting-associated protein VPS28 family protein )

HSP 1 Score: 235.3 bits (599), Expect = 5.0e-62
Identity = 129/194 (66.49%), Postives = 155/194 (79.90%), Query Frame = 0


Query: 1   MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERL 60
           MY+ FA+L+AII A EKLEKAYIRDLI  S+YE+EC +LI HFKTL++TL D+VP +ER 
Sbjct: 15  MYENFAELFAIIKATEKLEKAYIRDLINPSEYESECQKLIVHFKTLSATLKDTVPNIERF 74

Query: 61  AESYKIECPAAI-------------NQAAAAASSTASAAIVAECVQNFITAMDSVKLNMV 120
           A++YK++CPAA+             ++A  AAS++ SA+IVAECVQNFIT+MDS+KLNMV
Sbjct: 75  ADTYKMDCPAALYRLVTSGLPATVEHRATVAASTSNSASIVAECVQNFITSMDSLKLNMV 134

Query: 121 AVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREWLG-LSKTGAGEELAEQQSRELHFDL 180
           AVDQV+PLL DL  SL KLSIL  DFEGK KM+EWL  LSK GA +EL EQQSR+LHFDL
Sbjct: 135 AVDQVYPLLSDLSASLNKLSILPPDFEGKTKMKEWLSRLSKMGAADELTEQQSRQLHFDL 194

[Close]

BLAST of Sed0016121 vs. TAIR 10
Match: AT4G21560.1 (vacuolar protein sorting-associated protein 28 homolog 1 )

HSP 1 Score: 235.3 bits (599), Expect = 5.0e-62
Identity = 129/194 (66.49%), Postives = 156/194 (80.41%), Query Frame = 0


Query: 1   MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERL 60
           MY+ FA+LYAII A EKLEKAYIRDLI  S+YETEC +LI HFKTL+++L D VP +ER 
Sbjct: 14  MYENFAELYAIIKATEKLEKAYIRDLISPSEYETECQKLIVHFKTLSASLKDMVPNIERF 73

Query: 61  AESYKIECPAAI-------------NQAAAAASSTASAAIVAECVQNFITAMDSVKLNMV 120
           AE+YK++C AA+             ++AAA+AS+++SA++VAECVQNFIT+MDS+KLNMV
Sbjct: 74  AETYKMDCSAAVYRLVTSGVPATVEHRAAASASTSSSASVVAECVQNFITSMDSLKLNMV 133

Query: 121 AVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREW-LGLSKTGAGEELAEQQSRELHFDL 180
           AVDQV+PLL DL  SL KLSIL  DFEGK KM+EW L LSK GA +EL EQQ+R+LHFDL
Sbjct: 134 AVDQVYPLLSDLSASLNKLSILPPDFEGKIKMKEWLLRLSKMGASDELTEQQARQLHFDL 193

[Close]

BLAST of Sed0016121 vs. TAIR 10
Match: AT4G21560.2 (vacuolar protein sorting-associated protein 28 homolog 1 )

HSP 1 Score: 235.3 bits (599), Expect = 5.0e-62
Identity = 129/194 (66.49%), Postives = 156/194 (80.41%), Query Frame = 0


Query: 1   MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERL 60
           MY+ FA+LYAII A EKLEKAYIRDLI  S+YETEC +LI HFKTL+++L D VP +ER 
Sbjct: 14  MYENFAELYAIIKATEKLEKAYIRDLISPSEYETECQKLIVHFKTLSASLKDMVPNIERF 73

Query: 61  AESYKIECPAAI-------------NQAAAAASSTASAAIVAECVQNFITAMDSVKLNMV 120
           AE+YK++C AA+             ++AAA+AS+++SA++VAECVQNFIT+MDS+KLNMV
Sbjct: 74  AETYKMDCSAAVYRLVTSGVPATVEHRAAASASTSSSASVVAECVQNFITSMDSLKLNMV 133

Query: 121 AVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREW-LGLSKTGAGEELAEQQSRELHFDL 180
           AVDQV+PLL DL  SL KLSIL  DFEGK KM+EW L LSK GA +EL EQQ+R+LHFDL
Sbjct: 134 AVDQVYPLLSDLSASLNKLSILPPDFEGKIKMKEWLLRLSKMGASDELTEQQARQLHFDL 193

[Close]

BLAST of Sed0016121 vs. TAIR 10
Match: AT4G21560.3 (vacuolar protein sorting-associated protein 28 homolog 1 )

HSP 1 Score: 235.3 bits (599), Expect = 5.0e-62
Identity = 129/194 (66.49%), Postives = 156/194 (80.41%), Query Frame = 0


Query: 1   MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERL 60
           MY+ FA+LYAII A EKLEKAYIRDLI  S+YETEC +LI HFKTL+++L D VP +ER 
Sbjct: 14  MYENFAELYAIIKATEKLEKAYIRDLISPSEYETECQKLIVHFKTLSASLKDMVPNIERF 73

Query: 61  AESYKIECPAAI-------------NQAAAAASSTASAAIVAECVQNFITAMDSVKLNMV 120
           AE+YK++C AA+             ++AAA+AS+++SA++VAECVQNFIT+MDS+KLNMV
Sbjct: 74  AETYKMDCSAAVYRLVTSGVPATVEHRAAASASTSSSASVVAECVQNFITSMDSLKLNMV 133

Query: 121 AVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREW-LGLSKTGAGEELAEQQSRELHFDL 180
           AVDQV+PLL DL  SL KLSIL  DFEGK KM+EW L LSK GA +EL EQQ+R+LHFDL
Sbjct: 134 AVDQVYPLLSDLSASLNKLSILPPDFEGKIKMKEWLLRLSKMGASDELTEQQARQLHFDL 193

[Close]

BLAST of Sed0016121 vs. TAIR 10
Match: AT4G05000.2 (Vacuolar protein sorting-associated protein VPS28 family protein )

HSP 1 Score: 235.3 bits (599), Expect = 5.0e-62
Identity = 129/194 (66.49%), Postives = 155/194 (79.90%), Query Frame = 0


Query: 1   MYDIFADLYAIINAAEKLEKAYIRDLIPSSDYETECFELIAHFKTLASTLTDSVPTVERL 60
           MY+ FA+L+AII A EKLEKAYIRDLI  S+YE+EC +LI HFKTL++TL D+VP +ER 
Sbjct: 15  MYENFAELFAIIKATEKLEKAYIRDLINPSEYESECQKLIVHFKTLSATLKDTVPNIERF 74

Query: 61  AESYKIECPAAI-------------NQAAAAASSTASAAIVAECVQNFITAMDSVKLNMV 120
           A++YK++CPAA+             ++A  AAS++ SA+IVAECVQNFIT+MDS+KLNMV
Sbjct: 75  ADTYKMDCPAALYRLVTSGLPATVEHRATVAASTSNSASIVAECVQNFITSMDSLKLNMV 134

Query: 121 AVDQVHPLLLDLLGSLKKLSILGADFEGKKKMREWLG-LSKTGAGEELAEQQSRELHFDL 180
           AVDQV+PLL DL  SL KLSIL  DFEGK KM+EWL  LSK GA +EL EQQSR+LHFDL
Sbjct: 135 AVDQVYPLLSDLSASLNKLSILPPDFEGKTKMKEWLSRLSKMGAADELTEQQSRQLHFDL 194

The following BLAST results are available for this feature:

BLAST of Sed0016121 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142298.1	5.2e-69	76.29	vacuolar protein sorting-associated protein 28 homolog 2 [Momordica charantia] >...	[more]
XP_023544381.1	3.4e-68	74.74	vacuolar protein sorting-associated protein 28 homolog 2 isoform X1 [Cucurbita p...	[more]
KAG6603719.1	3.4e-68	74.74	Vacuolar protein sorting-associated protein 28-like 2, partial [Cucurbita argyro...	[more]
XP_022950166.1	3.4e-68	74.74	vacuolar protein sorting-associated protein 28 homolog 2 [Cucurbita moschata] >X...	[more]
XP_008439898.1	2.8e-67	74.74	PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Cucumis mel...	[more]

BLAST of Sed0016121 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65421	7.0e-61	66.49	Vacuolar protein sorting-associated protein 28 homolog 1 OS=Arabidopsis thaliana...	[more]
Q9S9T7	7.0e-61	66.49	Vacuolar protein sorting-associated protein 28 homolog 2 OS=Arabidopsis thaliana...	[more]
Q54NF1	4.5e-31	42.93	Vacuolar protein sorting-associated protein 28 OS=Dictyostelium discoideum OX=44...	[more]
Q9V359	5.3e-24	37.22	Vacuolar protein sorting-associated protein 28 homolog OS=Drosophila melanogaste...	[more]
A8XWB7	5.5e-21	34.08	Vacuolar protein sorting-associated protein 28 homolog OS=Caenorhabditis briggsa...	[more]

BLAST of Sed0016121 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CL71	2.5e-69	76.29	Vacuolar protein sorting-associated protein 28 homolog OS=Momordica charantia OX...	[more]
A0A6J1GE20	1.6e-68	74.74	Vacuolar protein sorting-associated protein 28 homolog OS=Cucurbita moschata OX=...	[more]
A0A6J1IJT1	1.4e-67	74.23	Vacuolar protein sorting-associated protein 28 homolog OS=Cucurbita maxima OX=36...	[more]
A0A1S3B0K8	1.4e-67	74.74	Vacuolar protein sorting-associated protein 28 homolog OS=Cucumis melo OX=3656 G...	[more]
A0A5D3CMS3	1.4e-67	74.74	Vacuolar protein sorting-associated protein 28 homolog OS=Cucumis melo var. maku...	[more]

BLAST of Sed0016121 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G05000.1	5.0e-62	66.49	Vacuolar protein sorting-associated protein VPS28 family protein	[more]
AT4G21560.1	5.0e-62	66.49	vacuolar protein sorting-associated protein 28 homolog 1	[more]
AT4G21560.2	5.0e-62	66.49	vacuolar protein sorting-associated protein 28 homolog 1	[more]
AT4G21560.3	5.0e-62	66.49	vacuolar protein sorting-associated protein 28 homolog 1	[more]
AT4G05000.2	5.0e-62	66.49	Vacuolar protein sorting-associated protein VPS28 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007143	Vacuolar protein sorting-associated Vps28	PFAM	PF03997	VPS28	coord: 5..177 e-value: 1.0E-50 score: 172.1
IPR007143	Vacuolar protein sorting-associated Vps28	PANTHER	PTHR12937	VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28	coord: 1..180
IPR037206	VPS28, C-terminal domain superfamily	GENE3D	1.20.120.1130		coord: 80..178 e-value: 6.2E-33 score: 114.7
IPR037206	VPS28, C-terminal domain superfamily	SUPERFAMILY	140427	VPS28 C-terminal domain-like	coord: 85..177
IPR038358	VPS28, N-terminal domain superfamily	GENE3D	1.20.1440.200		coord: 1..76 e-value: 2.6E-19 score: 71.5
None	No IPR available	PANTHER	PTHR12937:SF3	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1	coord: 1..180
IPR017898	Vacuolar protein sorting-associated, VPS28, N-terminal	PROSITE	PS51313	VPS28_N	coord: 1..85 score: 19.693989
IPR017899	Vacuolar protein sorting-associated, VPS28, C-terminal	PROSITE	PS51310	VPS28_C	coord: 83..178 score: 33.83886
IPR037202	ESCRT assembly domain	SUPERFAMILY	140111	Endosomal sorting complex assembly domain	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016121.1	Sed0016121.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043328	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
biological_process	GO:0032509	endosome transport via multivesicular body sorting pathway
cellular_component	GO:0000813	ESCRT I complex
molecular_function	GO:0044877	protein-containing complex binding