Sed0015467 (gene) Chayote v1

Overview


Name	Sed0015467
Type	gene
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L16, chloroplastic
Location	Contig00297: 37675 .. 39425 (-)
RNA-Seq Expression	Sed0015467
Synteny	Sed0015467

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAGAGAAGGAAGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTGCTATCCAGTTAGAACTATCTATGGGGTATTAGGCATAAAAATTTGGATATTTGTAGACGAACAATAATAAGCCCTTACTCAACTTGTGTTTACGTTTTATTCAATGATAGAGCGCGAAATGACAAATCAGTCTTTTTCGTTTAAATAAAAAATGAGCAATTCTATAAGGTTAAATAAAAATAAAATTAATCATTTGAGATAATTGCTATGCTTAGTGTGCGACTCGTCGGTTTTTTTAAGGTTAGGATTAAAACGAAAACGAAGGATCAGCCCATACAGAATCTGAACTAATAATTATAAAACTAATAACCAACTCATCGCTTCGCATTATCTGGATCTAAAAAACCAACCAGGCAAGATATGTTATATTGGTCATATCATTGTAGCAACTGAAATTTTTTTGCATAAAAAAAACAATACGATTATGAGTTGTGAAGCAAGAAAAGTATGCGGATAAATGGAAGGGTGAAAGAAAGATAGAAAAAAAATATGAATGATATATAATTCCAATATGGAATATGTAAGGTCTATGGGTCATCTCATAAAAGGTAGTGTAATAAAGCATTAAGACTGATGGATTCATAATTAGATGAATCTGTTCATAGAACAAAAAAGCCAAGAGCCCCGAGACAATAAAGACTGAGAAGATTGACTCAAGAACAAATTTTATTCAGGGCTCCATTGTATAATTAAGACCTAAACATTAATCGAGAGGCGATGGGAACGAGGGAACCCCTGAATACATAATATTCTATTGAAAACGAATCCTAATAATTCATTGGGTAGGATGGCGGAAGGAACCCAAGACCAATCCATTTATTATGAGAGGTCGGTTCATGGGCTAATTAACCCGCGAACCCAAACACATATAAAAAGAGTAAATATTCGCCCGCGAACGTTTCCATTTTATTAGATTTCTAAATTTGGGTCGTATAATCAAATAATAGATAAAAAAAGAAAAGGCAAAACAAAATAAGGATTTATTATAACTGTATAATAAAAGAAAAAATAACAAAACGAGATTCTATATATCTATAATTTTTTAGAAAACTCTAATAAAAAAATTATTCTAGAATCTATAAAGAGTTTCGTTTTCTATCAAAAGAAGATATAAAAATTTCTAATAGATGGATTAAATGGAATCTCAAAGAATCCCACGATTCAATCTATTATTGAATAAATACATGTATATTTTTTTGAATCGTTTCATTCGCGAGGAGCTGGATGAGAAGAAACTCTCATGTCCGGTTCTGTAGTAGAGATGGAATTGAGAAATAACCATCAACTATAACCCCAAAAGAACCAGATTTCGTAAACACCATAGAGGAAGAATGAAAGGAATGTCTTATCGAGGCAATCGTATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTATTAAACCAGGTAGAATACTTTATGAAATGGGTGGAGTAGCAGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCGTCCAAACTGCCTATACGAACCCAATTCATTACTTCGGCATAA

mRNA sequence

ATGGATCAGAGAAGGAAGGGAAGAATGAAAGGAATGTCTTATCGAGGCAATCGTATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTATTAAACCAGGTAGAATACTTTATGAAATGGGTGGAGTAGCAGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCGTCCAAACTGCCTATACGAACCCAATTCATTACTTCGGCATAA

Coding sequence (CDS)

ATGGATCAGAGAAGGAAGGGAAGAATGAAAGGAATGTCTTATCGAGGCAATCGTATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTATTAAACCAGGTAGAATACTTTATGAAATGGGTGGAGTAGCAGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCGTCCAAACTGCCTATACGAACCCAATTCATTACTTCGGCATAA

Protein sequence

MDQRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQFITSA

Homology

[Close]

BLAST of Sed0015467 vs. NCBI nr
Match: QIT04170.1 (ribosomal protein L16 [Sechium edule])

HSP 1 Score: 247.3 bits (630), Expect = 7.2e-62
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 3   QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 62
           +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP
Sbjct: 11  KHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 70

Query: 63  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ 122
           DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ
Sbjct: 71  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ 130

Query: 123 FITSA 128
           FITSA
Sbjct: 131 FITSA 135

[Close]

BLAST of Sed0015467 vs. NCBI nr
Match: YP_009751943.1 (ribosomal protein L16 [Cyclanthera pedata] >QIT04761.1 ribosomal protein L16 [Cyclanthera pedata] >QWQ50120.1 50S ribosomal protein L16 [Cyclanthera pedata])

HSP 1 Score: 245.0 bits (624), Expect = 3.6e-61
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 3   QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 62
           +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP
Sbjct: 11  KHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 70

Query: 63  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ 122
           DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASK+PIRTQ
Sbjct: 71  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKMPIRTQ 130

Query: 123 FITS 127
           FITS
Sbjct: 131 FITS 134

[Close]

BLAST of Sed0015467 vs. NCBI nr
Match: YP_009752280.1 (ribosomal protein L16 [Trichosanthes baviensis] >YP_009752449.1 ribosomal protein L16 [Trichosanthes tricuspidata] >YP_009752618.1 ribosomal protein L16 [Trichosanthes homophylla] >YP_009753211.1 ribosomal protein L16 [Trichosanthes truncata] >YP_009753657.1 ribosomal protein L16 [Trichosanthes wallichiana] >YP_009753742.1 ribosomal protein L16 [Trichosanthes nervifolia] >YP_009753826.1 ribosomal protein L16 [Trichosanthes pilosa] >YP_009753911.1 ribosomal protein L16 [Trichosanthes lobata] >QJD26507.1 ribosomal protein L16 [Trichosanthes kirilowii var. japonica] >QJD26681.1 ribosomal protein L16 [Trichosanthes rosthornii] >QIT04254.1 ribosomal protein L16 [Trichosanthes baviensis] >QIT04676.1 ribosomal protein L16 [Trichosanthes wallichiana] >QIT04845.1 ribosomal protein L16 [Trichosanthes tricuspidata])

HSP 1 Score: 244.6 bits (623), Expect = 4.6e-61
Identity = 118/124 (95.16%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 3   QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 62
           +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP
Sbjct: 11  KHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 70

Query: 63  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ 122
           DKPVTLRPTETRMGSGKGSPEYWVAV+KPGRILYEMGGVAENIARKAISIAASK+PIRTQ
Sbjct: 71  DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQ 130

Query: 123 FITS 127
           FITS
Sbjct: 131 FITS 134

[Close]

BLAST of Sed0015467 vs. NCBI nr
Match: YP_009560873.1 (ribosomal protein L16 [Trichosanthes kirilowii] >QAB33224.1 ribosomal protein L16 [Trichosanthes kirilowii])

HSP 1 Score: 244.6 bits (623), Expect = 4.6e-61
Identity = 118/124 (95.16%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 3   QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 62
           +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP
Sbjct: 12  KHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 71

Query: 63  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ 122
           DKPVTLRPTETRMGSGKGSPEYWVAV+KPGRILYEMGGVAENIARKAISIAASK+PIRTQ
Sbjct: 72  DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQ 131

Query: 123 FITS 127
           FITS
Sbjct: 132 FITS 135

[Close]

BLAST of Sed0015467 vs. NCBI nr
Match: YP_009752195.1 (ribosomal protein L16 [Linnaeosicyos amara] >QIT05605.1 ribosomal protein L16 [Linnaeosicyos amara])

HSP 1 Score: 243.8 bits (621), Expect = 7.9e-61
Identity = 117/124 (94.35%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 3   QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 62
           +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP
Sbjct: 11  KHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 70

Query: 63  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ 122
           DKPVTLRPTETRMGSGKGSPEYWVAV+KPGRILYEMGGVAENIARKA+SIAASK+PIRTQ
Sbjct: 71  DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKALSIAASKMPIRTQ 130

Query: 123 FITS 127
           FITS
Sbjct: 131 FITS 134

[Close]

BLAST of Sed0015467 vs. ExPASy Swiss-Prot
Match: Q4VZN1 (50S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 4.4e-62
Identity = 115/124 (92.74%), Postives = 120/124 (96.77%), Query Frame = 0


Query: 3   QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 62
           +  +GRMKG+SYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP
Sbjct: 11  KHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 70

Query: 63  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ 122
           DKPVTLRPTETRMGSGKGSPEYWVAV+KPGRILYEM GVAENIARKAISIAASK+PIRTQ
Sbjct: 71  DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQ 130

Query: 123 FITS 127
           FITS
Sbjct: 131 FITS 134

[Close]

BLAST of Sed0015467 vs. ExPASy Swiss-Prot
Match: B1NWI7 (50S ribosomal protein L16, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 7.4e-62
Identity = 113/124 (91.13%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 3   QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 62
           ++ +GRMKG+++RGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP
Sbjct: 11  KQHRGRMKGIAFRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 70

Query: 63  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ 122
           DKPVTLRPTETRMGSGKGSPEYWVAV+KPGRILYEMGGVAENIARKAISIAASK+PIRTQ
Sbjct: 71  DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQ 130

Query: 123 FITS 127
           FI S
Sbjct: 131 FIIS 134

[Close]

BLAST of Sed0015467 vs. ExPASy Swiss-Prot
Match: Q0ZIY1 (50S ribosomal protein L16, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 7.4e-62
Identity = 113/124 (91.13%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 3   QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 62
           ++ +GRMKG+SYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFP
Sbjct: 11  KQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFP 70

Query: 63  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ 122
           DKPVT+RPTETRMGSGKGSPEYWVAV+KPGRILYEMGGVAENIARKAISIAASK+PIRTQ
Sbjct: 71  DKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQ 130

Query: 123 FITS 127
           FI S
Sbjct: 131 FIIS 134

[Close]

BLAST of Sed0015467 vs. ExPASy Swiss-Prot
Match: Q49KW1 (50S ribosomal protein L16, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.7e-61
Identity = 112/124 (90.32%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 3   QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 62
           ++ +GRMKG+SYRGNRICFG+YA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFP
Sbjct: 11  KQHRGRMKGISYRGNRICFGKYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFP 70

Query: 63  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ 122
           DKPVT+RPTETRMGSGKGSPEYWVAV+KPGRILYEMGGVAENIARKAISIAASK+PIRTQ
Sbjct: 71  DKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQ 130

Query: 123 FITS 127
           FI S
Sbjct: 131 FIIS 134

[Close]

BLAST of Sed0015467 vs. ExPASy Swiss-Prot
Match: Q09ME0 (50S ribosomal protein L16, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 6.3e-61
Identity = 112/124 (90.32%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 3   QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 62
           ++ +GRMKG+SYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFP
Sbjct: 12  KQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFP 71

Query: 63  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ 122
           DKPVTLRPTETRMGSGKGSPEYWVAV+KPGRILYEM GVAENIARKAISIAASK+PIRTQ
Sbjct: 72  DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQ 131

Query: 123 FITS 127
           FI S
Sbjct: 132 FIIS 135

[Close]

BLAST of Sed0015467 vs. ExPASy TrEMBL
Match: A0A6H0EQ66 (50S ribosomal protein L16, chloroplastic OS=Sechium edule OX=184140 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.5e-62
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 3   QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 62
           +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP
Sbjct: 11  KHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 70

Query: 63  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ 122
           DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ
Sbjct: 71  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ 130

Query: 123 FITSA 128
           FITSA
Sbjct: 131 FITSA 135

[Close]

BLAST of Sed0015467 vs. ExPASy TrEMBL
Match: A0A6H0ER52 (50S ribosomal protein L16, chloroplastic OS=Cyclanthera pedata OX=198836 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.7e-61
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 3   QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 62
           +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP
Sbjct: 11  KHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 70

Query: 63  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ 122
           DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASK+PIRTQ
Sbjct: 71  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKMPIRTQ 130

Query: 123 FITS 127
           FITS
Sbjct: 131 FITS 134

[Close]

BLAST of Sed0015467 vs. ExPASy TrEMBL
Match: A0A6M3RTV2 (50S ribosomal protein L16, chloroplastic OS=Trichosanthes kirilowii var. japonica OX=61011 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.3e-61
Identity = 118/124 (95.16%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 3   QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 62
           +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP
Sbjct: 11  KHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 70

Query: 63  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ 122
           DKPVTLRPTETRMGSGKGSPEYWVAV+KPGRILYEMGGVAENIARKAISIAASK+PIRTQ
Sbjct: 71  DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQ 130

Query: 123 FITS 127
           FITS
Sbjct: 131 FITS 134

[Close]

BLAST of Sed0015467 vs. ExPASy TrEMBL
Match: A0A6H0ESK3 (50S ribosomal protein L16, chloroplastic OS=Trichosanthes tricuspidata OX=654837 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.3e-61
Identity = 118/124 (95.16%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 3   QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 62
           +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP
Sbjct: 11  KHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 70

Query: 63  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ 122
           DKPVTLRPTETRMGSGKGSPEYWVAV+KPGRILYEMGGVAENIARKAISIAASK+PIRTQ
Sbjct: 71  DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQ 130

Query: 123 FITS 127
           FITS
Sbjct: 131 FITS 134

[Close]

BLAST of Sed0015467 vs. ExPASy TrEMBL
Match: A0A6H0ERE0 (50S ribosomal protein L16, chloroplastic OS=Trichosanthes baviensis OX=1054457 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.3e-61
Identity = 118/124 (95.16%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 3   QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 62
           +  +GRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP
Sbjct: 11  KHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 70

Query: 63  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ 122
           DKPVTLRPTETRMGSGKGSPEYWVAV+KPGRILYEMGGVAENIARKAISIAASK+PIRTQ
Sbjct: 71  DKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQ 130

Query: 123 FITS 127
           FITS
Sbjct: 131 FITS 134

[Close]

BLAST of Sed0015467 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 225.3 bits (573), Expect = 2.7e-59
Identity = 106/124 (85.48%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 3   QRRKGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFP 62
           ++ +GR+KG+S RGNRICFGRYA+Q LEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFP
Sbjct: 11  KQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFP 70

Query: 63  DKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRTQ 122
           DKPVT+RP ETRMGSGKGSPEYWVAV+KPG+ILYEMGGV ENIARKAISIAASK+PI+TQ
Sbjct: 71  DKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIKTQ 130

Query: 123 FITS 127
           FI S
Sbjct: 131 FIIS 134

[Close]

BLAST of Sed0015467 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 165.2 bits (417), Expect = 3.3e-41
Identity = 85/125 (68.00%), Postives = 103/125 (82.40%), Query Frame = 0


Query: 3   QRRKGRM-KGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIF 62
           +  +GR+ KG+S +G  IC  RYA+Q LEPAWITSRQIEAGRRAMTRN  RG  + V IF
Sbjct: 839 KHHRGRINKGVSSQG-YIC-SRYALQTLEPAWITSRQIEAGRRAMTRNIGRGLTVRVHIF 898

Query: 63  PDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAASKLPIRT 122
            DKPVT+RP ETRMG GKG+P +WVAV+KPG+I+YEMGGV+E +AR+AISIAASKLP +T
Sbjct: 899 ADKPVTVRPPETRMGRGKGAPAFWVAVVKPGKIIYEMGGVSEKVAREAISIAASKLPAKT 958

Query: 123 QFITS 127
           +FI S
Sbjct: 959 KFIIS 961

[Close]

BLAST of Sed0015467 vs. TAIR 10
Match: ATMG00080.1 (ribosomal protein L16 )

HSP 1 Score: 101.7 bits (252), Expect = 4.5e-22
Identity = 56/129 (43.41%), Postives = 79/129 (61.24%), Query Frame = 0


Query: 5   RKGR-MKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGK 64
           RKGR  +G    G ++ FGRY  ++ +   ++ R IEA R        RAM+   RR GK
Sbjct: 48  RKGRCSRGCKPDGTKLGFGRYGTKSCKAGRLSYRAIEAARRAIIGHFHRAMSGQFRRNGK 107

Query: 65  IWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVIKPGRILYEMGGVAENIARKAISIAAS 124
           IWVR+F D P+T +PTE RMG GKG+P  W+A +  G+I +EM GV+   AR+A ++AA 
Sbjct: 108 IWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLANARQAATLAAH 167

The following BLAST results are available for this feature:

BLAST of Sed0015467 vs. NCBI nr


Match Name	E-value	Identity	Description
QIT04170.1	7.2e-62	96.80	ribosomal protein L16 [Sechium edule]	[more]
YP_009751943.1	3.6e-61	95.97	ribosomal protein L16 [Cyclanthera pedata] >QIT04761.1 ribosomal protein L16 [Cy...	[more]
YP_009752280.1	4.6e-61	95.16	ribosomal protein L16 [Trichosanthes baviensis] >YP_009752449.1 ribosomal protei...	[more]
YP_009560873.1	4.6e-61	95.16	ribosomal protein L16 [Trichosanthes kirilowii] >QAB33224.1 ribosomal protein L1...	[more]
YP_009752195.1	7.9e-61	94.35	ribosomal protein L16 [Linnaeosicyos amara] >QIT05605.1 ribosomal protein L16 [L...	[more]

BLAST of Sed0015467 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZN1	4.4e-62	92.74	50S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=...	[more]
B1NWI7	7.4e-62	91.13	50S ribosomal protein L16, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl16 P...	[more]
Q0ZIY1	7.4e-62	91.13	50S ribosomal protein L16, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl16 PE=...	[more]
Q49KW1	1.7e-61	90.32	50S ribosomal protein L16, chloroplastic OS=Eucalyptus globulus subsp. globulus ...	[more]
Q09ME0	6.3e-61	90.32	50S ribosomal protein L16, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl16 PE=...	[more]

BLAST of Sed0015467 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0EQ66	3.5e-62	96.80	50S ribosomal protein L16, chloroplastic OS=Sechium edule OX=184140 GN=rpl16 PE=...	[more]
A0A6H0ER52	1.7e-61	95.97	50S ribosomal protein L16, chloroplastic OS=Cyclanthera pedata OX=198836 GN=rpl1...	[more]
A0A6M3RTV2	2.3e-61	95.16	50S ribosomal protein L16, chloroplastic OS=Trichosanthes kirilowii var. japonic...	[more]
A0A6H0ESK3	2.3e-61	95.16	50S ribosomal protein L16, chloroplastic OS=Trichosanthes tricuspidata OX=654837...	[more]
A0A6H0ERE0	2.3e-61	95.16	50S ribosomal protein L16, chloroplastic OS=Trichosanthes baviensis OX=1054457 G...	[more]

BLAST of Sed0015467 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00790.1	2.7e-59	85.48	ribosomal protein L16	[more]
AT2G28830.1	3.3e-41	68.00	PLANT U-BOX 12	[more]
ATMG00080.1	4.5e-22	43.41	ribosomal protein L16	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000114	Ribosomal protein L16	PRINTS	PR00060	RIBOSOMALL16	coord: 34..45 score: 71.5 coord: 16..28 score: 47.85 coord: 50..79 score: 67.87 coord: 80..109 score: 56.6
IPR000114	Ribosomal protein L16	TIGRFAM	TIGR01164	TIGR01164	coord: 3..119 e-value: 5.4E-55 score: 182.9
IPR000114	Ribosomal protein L16	PANTHER	PTHR12220	50S/60S RIBOSOMAL PROTEIN L16	coord: 3..125
IPR000114	Ribosomal protein L16	HAMAP	MF_01342	Ribosomal_L16	coord: 1..126 score: 33.456284
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 4..124 e-value: 3.6E-45 score: 153.2
IPR016180	Ribosomal protein L10e/L16	CDD	cd01433	Ribosomal_L16_L10e	coord: 15..124 e-value: 8.77375E-52 score: 157.653
IPR036920	Ribosomal protein L10e/L16 superfamily	GENE3D	3.90.1170.10	Ribosomal protein L10e/L16	coord: 1..127 e-value: 1.8E-57 score: 196.2
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 3..125
None	No IPR available	PANTHER	PTHR12220:SF13	39S RIBOSOMAL PROTEIN L16, MITOCHONDRIAL	coord: 3..125
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00586	RIBOSOMAL_L16_1	coord: 51..62
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00701	RIBOSOMAL_L16_2	coord: 74..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015467.1	Sed0015467.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome