Sed0015250 (gene) Chayote v1

Overview


Name	Sed0015250
Type	gene
Organism	Sechium edule (Chayote v1)
Description	photosystem I reaction center subunit IV, chloroplastic-like
Location	LG03: 43436980 .. 43439230 (+)
RNA-Seq Expression	Sed0015250
Synteny	Sed0015250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAAAAGGATGACGCTATCCTTAGAATATGGATATGGTGTACAGATGGCAGCATCCAATTGGCTGGAAACCCAAGAGGAGAAAATGATACAACTGATTCCTTCTCCCTGAATTTGTGGTTATGATTAGTTTATCTCATAGTTGAAACCCCCTTCTCCAAATACCCAATTCATTCTCAAGCTTTGTTTTCCTTGAACAGACACATATTGATAGACTTAGCCGCCATGGCTGCCTCTAACCTTTCCTGCATTGCTTCTGGGCTGGTCATTCCATCTTCACCCACCATTTCTTCCTCCTCTAAGTTATCTAATTCTGTGGCCTTTTCCCCCAAGATTGCCAACTCCATTTCTAGATTCCTTGTCCGTGCCGCTGACGACGGGGCTGCCCCGACCGCTGCCACCGCCCTCGAAGAGCCCAAGCCTAAGCCTGCCCCAATTGGCCCCAAGAGAGGTGCCAAGGTGTGTGAGCATTTTTTTTTTTAGTTAATTAGTTCAATATAAGATTGAAATTTGAACTTTTAGGTCCGCGTTTGATAACCATTTTAATTTTTAGTTTTTTATTTTGGAAATTTAAGTTTAATTATATTCGATTTTTTTATCATGTACTTCATCTTCCTTACCGTGCGTCAATCTTTCTTAAAAAAAAAAAAAGTAAGTGGATGTCAACTAAATTTTTTTAAAAAAAAACAAACTTTTTGAAGTTTTTTTTTTTATTTCCAAATTTTCATTTTATTTCTTAAAATATACGTAAGATGTATATATTCAAATAACAAAACATCTATTGTAGGGTAGTTATTGTAAGCTTAAATTTCAAAAATTAAAATAAAAAAATAAAATATTTAGGAAAAGATTATTGAATTTTTCATTTTGGAATGTTGTCATGTATTTGAACAGGTGAAGATTCTAAGAAGAGAGTCCTACTGGTTCAAGGATGTTGGATCTGTTGTAACAGTTGACCAGGTTGGACAAAGTTTTGATTTACCTTTGTTTTTTTTTATTTAGGAGAGGGTAGACAAATACCGATTCTCGAGATTGAATGACCACTGATGTTAAACTGCTTTACAACCAAACAACGAAATAATTGCGCCACTTAATTACCTATTCAGCTTTATTTTATGGAAGTTAAGTTTGTTTTCTTCCGTTTTTCAAAAAAAAAAAAAAAGGAAAAAGTTTGCTTTCTACAATTTTTCTATAATGTGTTTTTTATAACTCAACCATAAGTGGGAAGTAAGGAGATTCAAATCTAGTACATTATAGATGATTCTACTATAACTCTCTACAATATATGTTGTCTTTGTCTTTGCATTTGAATTCTAAGCCAAATTTCAAAAAAAAAAAAACATTATTTACTTTCTAAAGCATGGAGGATCAATAAACTTGATATCAAAACAAGAAAATACCTTTGTAGAAATTGTTTATAAGCTTAATTTTTAAAAAGGAATAAACACAAATGGTTAATTATGAGGTCTTTTATAAGACTTTTGTTTGAGTTTTCATTTTTCATTATTCAGTTTACAAGTTAAGATTTCATCTAAGTTGCAATCGACCCTATAAGATAGTTTGATTTTATATCCTAAAACCAAAGTTCACCTATGTTATAAATATTACGAGGTCACTCACTTTTATAATGTGAAATTCTCGAACACCATAGTATTAAGTGAAATTTAAGCATGCACCAAATGAGTTGGAGGATGTTTCTATTGAAGCAATTGGACGGTACTCGCTGATTGTTTTATCTTGTTAAGATTGTAAAAAATATATATTAATTCTAAGTAAATGATATTTTTGCAGGACCCAAACACTCGATATCCTGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAAGCTTGTTTTGTGCTTTTGTGTATCTTTTAGTGAAATGTTTGTATAATACTTCCAATTTCAATCTATTTCTTCTCTCTTCAATGAGTGTGTTGCTTAAGCTTGTGGTGCTTTGTCTAATTGTTTTGGTATCCATCTCAAGCTGCATCACAAACGCCATACAAGTCAAGATTAGAAATATTGTGTGATTTGTTGACGACAAAGTAAAGTATATTCTCTTTATAGCTTTTATGATTTTGGCCACTAGAATTTGGAGTTTCCTAGCAAGCTTTGTTCACAACTTGAACAATGTGTGGGTGTGTGAGTATCAGATATTGAAATGATCTAAAGCACGAGTTGCTACTATTGCGAACGAAGAC

mRNA sequence

CAGAAAAGGATGACGCTATCCTTAGAATATGGATATGGTGTACAGATGGCAGCATCCAATTGGCTGGAAACCCAAGAGGAGAAAATGATACAACTGATTCCTTCTCCCTGAATTTGTGGTTATGATTAGTTTATCTCATAGTTGAAACCCCCTTCTCCAAATACCCAATTCATTCTCAAGCTTTGTTTTCCTTGAACAGACACATATTGATAGACTTAGCCGCCATGGCTGCCTCTAACCTTTCCTGCATTGCTTCTGGGCTGGTCATTCCATCTTCACCCACCATTTCTTCCTCCTCTAAGTTATCTAATTCTGTGGCCTTTTCCCCCAAGATTGCCAACTCCATTTCTAGATTCCTTGTCCGTGCCGCTGACGACGGGGCTGCCCCGACCGCTGCCACCGCCCTCGAAGAGCCCAAGCCTAAGCCTGCCCCAATTGGCCCCAAGAGAGGTGCCAAGGTGAAGATTCTAAGAAGAGAGTCCTACTGGTTCAAGGATGTTGGATCTGTTGTAACAGTTGACCAGGACCCAAACACTCGATATCCTGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAAGCTTGTTTTGTGCTTTTGTGTATCTTTTAGTGAAATGTTTGTATAATACTTCCAATTTCAATCTATTTCTTCTCTCTTCAATGAGTGTGTTGCTTAAGCTTGTGGTGCTTTGTCTAATTGTTTTGGTATCCATCTCAAGCTGCATCACAAACGCCATACAAGTCAAGATTAGAAATATTGTGTGATTTGTTGACGACAAAGTAAAGTATATTCTCTTTATAGCTTTTATGATTTTGGCCACTAGAATTTGGAGTTTCCTAGCAAGCTTTGTTCACAACTTGAACAATGTGTGGGTGTGTGAGTATCAGATATTGAAATGATCTAAAGCACGAGTTGCTACTATTGCGAACGAAGAC

Coding sequence (CDS)

ATGGCTGCCTCTAACCTTTCCTGCATTGCTTCTGGGCTGGTCATTCCATCTTCACCCACCATTTCTTCCTCCTCTAAGTTATCTAATTCTGTGGCCTTTTCCCCCAAGATTGCCAACTCCATTTCTAGATTCCTTGTCCGTGCCGCTGACGACGGGGCTGCCCCGACCGCTGCCACCGCCCTCGAAGAGCCCAAGCCTAAGCCTGCCCCAATTGGCCCCAAGAGAGGTGCCAAGGTGAAGATTCTAAGAAGAGAGTCCTACTGGTTCAAGGATGTTGGATCTGTTGTAACAGTTGACCAGGACCCAAACACTCGATATCCTGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAA

Protein sequence

MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSISRFLVRAADDGAAPTAATALEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

Homology

[Close]

BLAST of Sed0015250 vs. NCBI nr
Match: XP_004152807.2 (photosystem I reaction center subunit IV, chloroplastic [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 3.6e-48
Identity = 112/142 (78.87%), Postives = 123/142 (86.62%), Query Frame = 0


Query: 1   MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSI---SRFLVRAADDGAAPTA 60
           MAASNLSCIASG+VIPSS TISSSS   +S+AF PK +NSI   SR ++RA+D+ A P A
Sbjct: 3   MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRASDEAAPPPA 62

Query: 61  ATA-----LEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVVVRF 120
           ATA      EEPKPKPAPIGPKRGAKVKILR+ESYW+KDVGSVVTVDQDPNTRYPVVVRF
Sbjct: 63  ATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRF 122

Query: 121 NKVNYASVSTNNYALDEIEEVA 135
           NKVNYASVSTNNYALDEI+EVA
Sbjct: 123 NKVNYASVSTNNYALDEIQEVA 144

[Close]

BLAST of Sed0015250 vs. NCBI nr
Match: KAE8651724.1 (hypothetical protein Csa_006032 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 3.6e-48
Identity = 112/142 (78.87%), Postives = 123/142 (86.62%), Query Frame = 0


Query: 1   MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSI---SRFLVRAADDGAAPTA 60
           MAASNLSCIASG+VIPSS TISSSS   +S+AF PK +NSI   SR ++RA+D+ A P A
Sbjct: 91  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRASDEAAPPPA 150

Query: 61  ATA-----LEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVVVRF 120
           ATA      EEPKPKPAPIGPKRGAKVKILR+ESYW+KDVGSVVTVDQDPNTRYPVVVRF
Sbjct: 151 ATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRF 210

Query: 121 NKVNYASVSTNNYALDEIEEVA 135
           NKVNYASVSTNNYALDEI+EVA
Sbjct: 211 NKVNYASVSTNNYALDEIQEVA 232

[Close]

BLAST of Sed0015250 vs. NCBI nr
Match: XP_008441802.1 (PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis melo])

HSP 1 Score: 197.2 bits (500), Expect = 9.0e-47
Identity = 114/145 (78.62%), Postives = 122/145 (84.14%), Query Frame = 0


Query: 1   MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSI---SRFLVRAA-------- 60
           MAASNLSCIASG+VIPSS TISSSS   +S+AF PK +NSI   SR ++RAA        
Sbjct: 3   MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAAPP 62

Query: 61  DDGAAPTAATALEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVV 120
              AAP AATA EEPKPKPAPIGPKRGAKVKILR+ESYW+KDVGSVVTVDQDPNTRYPVV
Sbjct: 63  PPAAAPAAATA-EEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVV 122

Query: 121 VRFNKVNYASVSTNNYALDEIEEVA 135
           VRFNKVNYASVSTNNYALDEIEEVA
Sbjct: 123 VRFNKVNYASVSTNNYALDEIEEVA 146

[Close]

BLAST of Sed0015250 vs. NCBI nr
Match: XP_038889433.1 (photosystem I reaction center subunit IV, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 195.3 bits (495), Expect = 3.4e-46
Identity = 113/145 (77.93%), Postives = 122/145 (84.14%), Query Frame = 0


Query: 1   MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSI---SRFLVRAA-------- 60
           MAASNLSCIASG+VIPSS TISSSS   +S+AF PK +NSI   SR ++RAA        
Sbjct: 1   MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAAPP 60

Query: 61  DDGAAPTAATALEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVV 120
              AAP AATA EEPKPKPAPIGPKRGAKVKILR+ESYW+KDVGSVVTVDQDPNTRYPVV
Sbjct: 61  PPAAAPAAATA-EEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVV 120

Query: 121 VRFNKVNYASVSTNNYALDEIEEVA 135
           VRF+KVNYASVSTNNYALDEIEEVA
Sbjct: 121 VRFSKVNYASVSTNNYALDEIEEVA 144

[Close]

BLAST of Sed0015250 vs. NCBI nr
Match: KAG6598956.1 (Photosystem I reaction center subunit IV, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.1 bits (492), Expect = 7.6e-46
Identity = 106/135 (78.52%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MAASNLSCIASGLVIPSSPTISSSSKL-SNSVAFSPKIANSISRFLVRAADDGAAPTAAT 60
           MAASNLSCIASG++IPS PTISSSS   S+S A  P  + S SRF++RA  D AAP  A 
Sbjct: 1   MAASNLSCIASGVLIPSPPTISSSSSFRSSSFAIFPNNSRS-SRFVIRATADEAAPATAA 60

Query: 61  ALEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVVVRFNKVNYAS 120
           A EEPKPKP PIGPKRGAKVKILR+ESYW+KD+GSVVTVDQDPNTRYPVVVRFNKVNYAS
Sbjct: 61  ATEEPKPKPPPIGPKRGAKVKILRKESYWYKDIGSVVTVDQDPNTRYPVVVRFNKVNYAS 120

Query: 121 VSTNNYALDEIEEVA 135
           VSTNNYALDEI+EVA
Sbjct: 121 VSTNNYALDEIKEVA 134

[Close]

BLAST of Sed0015250 vs. ExPASy Swiss-Prot
Match: Q9S831 (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-32
Identity = 83/136 (61.03%), Postives = 100/136 (73.53%), Query Frame = 0


Query: 14  VIPSSPT-ISSSSKLSNSVAFSPKIANSISRFLVRAADD--------------GAAPTAA 73
           V+P++ T ++ +S   +SV+F P + N+ SR +VRAA+D               AAP  A
Sbjct: 11  VLPANVTSVAGASSSRSSVSFLP-MRNAGSRLVVRAAEDPAPASSSSKDSPAAAAAPDGA 70

Query: 74  TALEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVVVRFNKVNYA 133
           TA    KPKP PIGPKRG+KVKILRRESYWFK+VGSVV VDQDP TRYPVVVRF KVNYA
Sbjct: 71  TA---TKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYA 130

Query: 134 SVSTNNYALDEIEEVA 135
           ++STNNYALDE+EEVA
Sbjct: 131 NISTNNYALDEVEEVA 142

[Close]

BLAST of Sed0015250 vs. ExPASy Swiss-Prot
Match: Q41229 (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEB PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 8.5e-32
Identity = 80/142 (56.34%), Postives = 102/142 (71.83%), Query Frame = 0


Query: 1   MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSIS----RFLVRAADDGAAPT 60
           MA+S+++  ASG ++ +    +S++    S+ F     N+ +    R +VRAA++ A P 
Sbjct: 1   MASSSMASAASGFMVATPNIATSNTAPRTSMLFFSSSKNNTTTNFPRLVVRAAEEAAPPA 60

Query: 61  A-ATALEEPKP----KPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVVVR 120
           A ATA  E  P    KP PIGPKRG KV++LR+ESYW+K VGSVV VDQDPNTRYPVVVR
Sbjct: 61  ATATAEGEAPPAKAAKPPPIGPKRGTKVRVLRKESYWYKGVGSVVAVDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEIEEV 134
           FNKVNYA+VSTNNYALDE+EEV
Sbjct: 121 FNKVNYANVSTNNYALDEVEEV 142

[Close]

BLAST of Sed0015250 vs. ExPASy Swiss-Prot
Match: Q41228 (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEA PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 7.2e-31
Identity = 79/142 (55.63%), Postives = 100/142 (70.42%), Query Frame = 0


Query: 1   MAASNLSCIASGLVIPSSPTISSSSKLSNSVAF---SPKIANSISRFLVRAADDGAAPTA 60
           MA+ N++  AS  ++ ++P ++S++  S +      S    ++  R +VRAA++ AAP A
Sbjct: 1   MASCNMASAASNFLV-ATPNVASNTNTSRTTMLFFSSKNYGSTAPRLVVRAAEE-AAPPA 60

Query: 61  ATALEEP------KPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVVVR 120
           A A  EP        KP PIGPKRG KV+ILR+ESYW+K  GSVV  DQDPNTRYPVVVR
Sbjct: 61  AAATAEPAEAPVKAAKPPPIGPKRGTKVRILRKESYWYKGTGSVVACDQDPNTRYPVVVR 120

Query: 121 FNKVNYASVSTNNYALDEIEEV 134
           FNKVNYA+VSTNNYALDEIEEV
Sbjct: 121 FNKVNYANVSTNNYALDEIEEV 140

[Close]

BLAST of Sed0015250 vs. ExPASy Swiss-Prot
Match: P12354 (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-30
Identity = 68/97 (70.10%), Postives = 80/97 (82.47%), Query Frame = 0


Query: 42  SRFLVRAADDGAAPTAATALEEPKP----KPAPIGPKRGAKVKILRRESYWFKDVGSVVT 101
           +R +VRAA++ AA  AA + E   P    KP PIGPKRG+KV+I+R+ESYW+K VGSVV 
Sbjct: 29  TRLVVRAAEEAAAAPAAASPEGEAPKAAAKPPPIGPKRGSKVRIMRKESYWYKGVGSVVA 88

Query: 102 VDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA 135
           VDQDP TRYPVVVRFNKVNYA+VSTNNYALDEI+EVA
Sbjct: 89  VDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEVA 125

[Close]

BLAST of Sed0015250 vs. ExPASy Swiss-Prot
Match: P13194 (Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAE PE=1 SV=2)

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-28
Identity = 78/148 (52.70%), Postives = 97/148 (65.54%), Query Frame = 0


Query: 1   MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSISRFLVRAADDGAA------ 60
           MA++N++   S  ++ +     ++  +S+ V+F P  +N +   LV  A++  A      
Sbjct: 1   MASTNMASATSRFMLAAGIPSGANGGVSSRVSFLP--SNRLGLKLVARAEEPTAAAPAEP 60

Query: 61  -------PTAATALEEP-KPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRY 120
                  P AA A +EP K KP P GPKRG KVKILRRESYW+   GSVVTVDQDPNTRY
Sbjct: 61  APAADEKPEAAVATKEPAKAKPPPRGPKRGTKVKILRRESYWYNGTGSVVTVDQDPNTRY 120

Query: 121 PVVVRFNKVNYASVSTNNYALDEIEEVA 135
           PVVVRF KVNYA VSTNNYALDEI+EVA
Sbjct: 121 PVVVRFAKVNYAGVSTNNYALDEIKEVA 146

[Close]

BLAST of Sed0015250 vs. ExPASy TrEMBL
Match: A0A0A0LJQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079660 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.8e-48
Identity = 112/142 (78.87%), Postives = 123/142 (86.62%), Query Frame = 0


Query: 1   MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSI---SRFLVRAADDGAAPTA 60
           MAASNLSCIASG+VIPSS TISSSS   +S+AF PK +NSI   SR ++RA+D+ A P A
Sbjct: 79  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRASDEAAPPPA 138

Query: 61  ATA-----LEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVVVRF 120
           ATA      EEPKPKPAPIGPKRGAKVKILR+ESYW+KDVGSVVTVDQDPNTRYPVVVRF
Sbjct: 139 ATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRF 198

Query: 121 NKVNYASVSTNNYALDEIEEVA 135
           NKVNYASVSTNNYALDEI+EVA
Sbjct: 199 NKVNYASVSTNNYALDEIQEVA 220

[Close]

BLAST of Sed0015250 vs. ExPASy TrEMBL
Match: A0A1S3B3T3 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103485855 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.3e-47
Identity = 114/145 (78.62%), Postives = 122/145 (84.14%), Query Frame = 0


Query: 1   MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSI---SRFLVRAA-------- 60
           MAASNLSCIASG+VIPSS TISSSS   +S+AF PK +NSI   SR ++RAA        
Sbjct: 3   MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAAPP 62

Query: 61  DDGAAPTAATALEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVV 120
              AAP AATA EEPKPKPAPIGPKRGAKVKILR+ESYW+KDVGSVVTVDQDPNTRYPVV
Sbjct: 63  PPAAAPAAATA-EEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVV 122

Query: 121 VRFNKVNYASVSTNNYALDEIEEVA 135
           VRFNKVNYASVSTNNYALDEIEEVA
Sbjct: 123 VRFNKVNYASVSTNNYALDEIEEVA 146

[Close]

BLAST of Sed0015250 vs. ExPASy TrEMBL
Match: A0A6J1CRI6 (photosystem I reaction center subunit IV, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111014100 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.7e-46
Identity = 113/142 (79.58%), Postives = 121/142 (85.21%), Query Frame = 0


Query: 1   MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSISRFLV-RAADDGAAP---- 60
           MAA+NLSCIASG+VIPSS TISSSS+L+ SVAF PK  N ISR LV RAA D AAP    
Sbjct: 1   MAATNLSCIASGVVIPSSATISSSSRLT-SVAFFPKNPNPISRRLVIRAAADEAAPPPPA 60

Query: 61  ---TAATALEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVVVRF 120
              TA   +EE KPKPAPIGPKRGAKVKILR+ESYW+KDVGSVVTVDQDPNTRYPVVVRF
Sbjct: 61  AAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRF 120

Query: 121 NKVNYASVSTNNYALDEIEEVA 135
           NKVNYASVSTNNYALDE+EEVA
Sbjct: 121 NKVNYASVSTNNYALDEVEEVA 141

[Close]

BLAST of Sed0015250 vs. ExPASy TrEMBL
Match: A0A6J1HLT8 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111465716 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.1e-45
Identity = 114/144 (79.17%), Postives = 121/144 (84.03%), Query Frame = 0


Query: 1   MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSIS---RFLVR-AADDGAAP- 60
           MAASNLSCIASG++IPSSPTISSSS+ S SVAF PK + SIS   R +VR AAD+ AAP 
Sbjct: 1   MAASNLSCIASGVIIPSSPTISSSSRPS-SVAFFPKNSISISRSCRLVVRAAADEAAAPP 60

Query: 61  -----TAATALEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVVV 120
                TA    E PKPKPAPIGPKRG KVKILRRESYW+KDVGSVVTVDQDPNTRYPVVV
Sbjct: 61  PAAAATADAPAEVPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVV 120

Query: 121 RFNKVNYASVSTNNYALDEIEEVA 135
           RFNKVNYASVSTNNYALDEIEEVA
Sbjct: 121 RFNKVNYASVSTNNYALDEIEEVA 143

[Close]

BLAST of Sed0015250 vs. ExPASy TrEMBL
Match: A0A6J1FC09 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111444038 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.9e-45
Identity = 113/144 (78.47%), Postives = 120/144 (83.33%), Query Frame = 0


Query: 1   MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSIS---RFLVR-AADDGAAP- 60
           MAASNLSCIASG++IPSS TISSSS+ S SVAF PK + SIS   R +VR AAD+ AAP 
Sbjct: 1   MAASNLSCIASGVIIPSSTTISSSSRPS-SVAFFPKNSISISRSCRLVVRAAADEAAAPP 60

Query: 61  -----TAATALEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVVV 120
                TA    E PKPKPAPIGPKRG KVKILRRESYW+KDVGSVVTVDQDPNTRYPVVV
Sbjct: 61  PAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVV 120

Query: 121 RFNKVNYASVSTNNYALDEIEEVA 135
           RFNKVNYASVSTNNYALDEIEEVA
Sbjct: 121 RFNKVNYASVSTNNYALDEIEEVA 143

[Close]

BLAST of Sed0015250 vs. TAIR 10
Match: AT4G28750.1 (Photosystem I reaction centre subunit IV / PsaE protein )

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-33
Identity = 83/136 (61.03%), Postives = 100/136 (73.53%), Query Frame = 0


Query: 14  VIPSSPT-ISSSSKLSNSVAFSPKIANSISRFLVRAADD--------------GAAPTAA 73
           V+P++ T ++ +S   +SV+F P + N+ SR +VRAA+D               AAP  A
Sbjct: 11  VLPANVTSVAGASSSRSSVSFLP-MRNAGSRLVVRAAEDPAPASSSSKDSPAAAAAPDGA 70

Query: 74  TALEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVVVRFNKVNYA 133
           TA    KPKP PIGPKRG+KVKILRRESYWFK+VGSVV VDQDP TRYPVVVRF KVNYA
Sbjct: 71  TA---TKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYA 130

Query: 134 SVSTNNYALDEIEEVA 135
           ++STNNYALDE+EEVA
Sbjct: 131 NISTNNYALDEVEEVA 142

[Close]

BLAST of Sed0015250 vs. TAIR 10
Match: AT2G20260.1 (photosystem I subunit E-2 )

HSP 1 Score: 125.6 bits (314), Expect = 3.1e-29
Identity = 77/143 (53.85%), Postives = 99/143 (69.23%), Query Frame = 0


Query: 6   LSCIASGLVIPSSPTIS---SSSKLSNSVAFSPKIANSISRFLVRAADDGAAPTAA---- 65
           ++  A+G ++ ++   +    SSK +  V+F P + +  SR +VRAA+D    TA+    
Sbjct: 3   MTSAATGFILTANVPAAIGGGSSKSTTIVSFLP-MRSFGSRLVVRAAEDTPPATASSDSS 62

Query: 66  --TALEEP------KPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVVV 125
             TA   P      K KP PIGPKRG+KVKILR+ESYW+K+VGSVV VDQDP TRYPVVV
Sbjct: 63  STTAAAAPAKVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPVVV 122

Query: 126 RFNKVNYASVSTNNYALDEIEEV 134
           RF KVNYA++STNNYALDE+EEV
Sbjct: 123 RFAKVNYANISTNNYALDEVEEV 144

The following BLAST results are available for this feature:

BLAST of Sed0015250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152807.2	3.6e-48	78.87	photosystem I reaction center subunit IV, chloroplastic [Cucumis sativus]	[more]
KAE8651724.1	3.6e-48	78.87	hypothetical protein Csa_006032 [Cucumis sativus]	[more]
XP_008441802.1	9.0e-47	78.62	PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis...	[more]
XP_038889433.1	3.4e-46	77.93	photosystem I reaction center subunit IV, chloroplastic-like [Benincasa hispida]	[more]
KAG6598956.1	7.6e-46	78.52	Photosystem I reaction center subunit IV, chloroplastic, partial [Cucurbita argy...	[more]

BLAST of Sed0015250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S831	1.7e-32	61.03	Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thalian...	[more]
Q41229	8.5e-32	56.34	Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestri...	[more]
Q41228	7.2e-31	55.63	Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestri...	[more]
P12354	2.1e-30	70.10	Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea OX=...	[more]
P13194	2.0e-28	52.70	Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare OX=45...	[more]

BLAST of Sed0015250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJQ1	1.8e-48	78.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079660 PE=3 SV=1	[more]
A0A1S3B3T3	4.3e-47	78.62	photosystem I reaction center subunit IV, chloroplastic-like OS=Cucumis melo OX=...	[more]
A0A6J1CRI6	3.7e-46	79.58	photosystem I reaction center subunit IV, chloroplastic-like OS=Momordica charan...	[more]
A0A6J1HLT8	1.1e-45	79.17	photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita maxima...	[more]
A0A6J1FC09	6.9e-45	78.47	photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita moscha...	[more]

BLAST of Sed0015250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28750.1	1.2e-33	61.03	Photosystem I reaction centre subunit IV / PsaE protein	[more]
AT2G20260.1	3.1e-29	53.85	photosystem I subunit E-2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003375	Photosystem I PsaE, reaction centre subunit IV	PFAM	PF02427	PSI_PsaE	coord: 74..133 e-value: 3.2E-30 score: 103.6
IPR003375	Photosystem I PsaE, reaction centre subunit IV	PANTHER	PTHR34549	PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, CHLOROPLASTIC-RELATED	coord: 1..134
None	No IPR available	GENE3D	2.30.30.50		coord: 67..134 e-value: 4.3E-36 score: 124.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..75
None	No IPR available	PANTHER	PTHR34549:SF7	PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A	coord: 1..134
IPR008990	Electron transport accessory-like domain superfamily	SUPERFAMILY	50090	Electron transport accessory proteins	coord: 73..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015250.1	Sed0015250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I