Sed0015250 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAGAAAAGGATGACGCTATCCTTAGAATATGGATATGGTGTACAGATGGCAGCATCCAATTGGCTGGAAACCCAAGAGGAGAAAATGATACAACTGATTCCTTCTCCCTGAATTTGTGGTTATGATTAGTTTATCTCATAGTTGAAACCCCCTTCTCCAAATACCCAATTCATTCTCAAGCTTTGTTTTCCTTGAACAGACACATATTGATAGACTTAGCCGCCATGGCTGCCTCTAACCTTTCCTGCATTGCTTCTGGGCTGGTCATTCCATCTTCACCCACCATTTCTTCCTCCTCTAAGTTATCTAATTCTGTGGCCTTTTCCCCCAAGATTGCCAACTCCATTTCTAGATTCCTTGTCCGTGCCGCTGACGACGGGGCTGCCCCGACCGCTGCCACCGCCCTCGAAGAGCCCAAGCCTAAGCCTGCCCCAATTGGCCCCAAGAGAGGTGCCAAGGTGTGTGAGCATTTTTTTTTTTAGTTAATTAGTTCAATATAAGATTGAAATTTGAACTTTTAGGTCCGCGTTTGATAACCATTTTAATTTTTAGTTTTTTATTTTGGAAATTTAAGTTTAATTATATTCGATTTTTTTATCATGTACTTCATCTTCCTTACCGTGCGTCAATCTTTCTTAAAAAAAAAAAAAGTAAGTGGATGTCAACTAAATTTTTTTAAAAAAAAACAAACTTTTTGAAGTTTTTTTTTTTATTTCCAAATTTTCATTTTATTTCTTAAAATATACGTAAGATGTATATATTCAAATAACAAAACATCTATTGTAGGGTAGTTATTGTAAGCTTAAATTTCAAAAATTAAAATAAAAAAATAAAATATTTAGGAAAAGATTATTGAATTTTTCATTTTGGAATGTTGTCATGTATTTGAACAGGTGAAGATTCTAAGAAGAGAGTCCTACTGGTTCAAGGATGTTGGATCTGTTGTAACAGTTGACCAGGTTGGACAAAGTTTTGATTTACCTTTGTTTTTTTTTATTTAGGAGAGGGTAGACAAATACCGATTCTCGAGATTGAATGACCACTGATGTTAAACTGCTTTACAACCAAACAACGAAATAATTGCGCCACTTAATTACCTATTCAGCTTTATTTTATGGAAGTTAAGTTTGTTTTCTTCCGTTTTTCAAAAAAAAAAAAAAAGGAAAAAGTTTGCTTTCTACAATTTTTCTATAATGTGTTTTTTATAACTCAACCATAAGTGGGAAGTAAGGAGATTCAAATCTAGTACATTATAGATGATTCTACTATAACTCTCTACAATATATGTTGTCTTTGTCTTTGCATTTGAATTCTAAGCCAAATTTCAAAAAAAAAAAAACATTATTTACTTTCTAAAGCATGGAGGATCAATAAACTTGATATCAAAACAAGAAAATACCTTTGTAGAAATTGTTTATAAGCTTAATTTTTAAAAAGGAATAAACACAAATGGTTAATTATGAGGTCTTTTATAAGACTTTTGTTTGAGTTTTCATTTTTCATTATTCAGTTTACAAGTTAAGATTTCATCTAAGTTGCAATCGACCCTATAAGATAGTTTGATTTTATATCCTAAAACCAAAGTTCACCTATGTTATAAATATTACGAGGTCACTCACTTTTATAATGTGAAATTCTCGAACACCATAGTATTAAGTGAAATTTAAGCATGCACCAAATGAGTTGGAGGATGTTTCTATTGAAGCAATTGGACGGTACTCGCTGATTGTTTTATCTTGTTAAGATTGTAAAAAATATATATTAATTCTAAGTAAATGATATTTTTGCAGGACCCAAACACTCGATATCCTGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAAGCTTGTTTTGTGCTTTTGTGTATCTTTTAGTGAAATGTTTGTATAATACTTCCAATTTCAATCTATTTCTTCTCTCTTCAATGAGTGTGTTGCTTAAGCTTGTGGTGCTTTGTCTAATTGTTTTGGTATCCATCTCAAGCTGCATCACAAACGCCATACAAGTCAAGATTAGAAATATTGTGTGATTTGTTGACGACAAAGTAAAGTATATTCTCTTTATAGCTTTTATGATTTTGGCCACTAGAATTTGGAGTTTCCTAGCAAGCTTTGTTCACAACTTGAACAATGTGTGGGTGTGTGAGTATCAGATATTGAAATGATCTAAAGCACGAGTTGCTACTATTGCGAACGAAGAC CAGAAAAGGATGACGCTATCCTTAGAATATGGATATGGTGTACAGATGGCAGCATCCAATTGGCTGGAAACCCAAGAGGAGAAAATGATACAACTGATTCCTTCTCCCTGAATTTGTGGTTATGATTAGTTTATCTCATAGTTGAAACCCCCTTCTCCAAATACCCAATTCATTCTCAAGCTTTGTTTTCCTTGAACAGACACATATTGATAGACTTAGCCGCCATGGCTGCCTCTAACCTTTCCTGCATTGCTTCTGGGCTGGTCATTCCATCTTCACCCACCATTTCTTCCTCCTCTAAGTTATCTAATTCTGTGGCCTTTTCCCCCAAGATTGCCAACTCCATTTCTAGATTCCTTGTCCGTGCCGCTGACGACGGGGCTGCCCCGACCGCTGCCACCGCCCTCGAAGAGCCCAAGCCTAAGCCTGCCCCAATTGGCCCCAAGAGAGGTGCCAAGGTGAAGATTCTAAGAAGAGAGTCCTACTGGTTCAAGGATGTTGGATCTGTTGTAACAGTTGACCAGGACCCAAACACTCGATATCCTGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAAGCTTGTTTTGTGCTTTTGTGTATCTTTTAGTGAAATGTTTGTATAATACTTCCAATTTCAATCTATTTCTTCTCTCTTCAATGAGTGTGTTGCTTAAGCTTGTGGTGCTTTGTCTAATTGTTTTGGTATCCATCTCAAGCTGCATCACAAACGCCATACAAGTCAAGATTAGAAATATTGTGTGATTTGTTGACGACAAAGTAAAGTATATTCTCTTTATAGCTTTTATGATTTTGGCCACTAGAATTTGGAGTTTCCTAGCAAGCTTTGTTCACAACTTGAACAATGTGTGGGTGTGTGAGTATCAGATATTGAAATGATCTAAAGCACGAGTTGCTACTATTGCGAACGAAGAC ATGGCTGCCTCTAACCTTTCCTGCATTGCTTCTGGGCTGGTCATTCCATCTTCACCCACCATTTCTTCCTCCTCTAAGTTATCTAATTCTGTGGCCTTTTCCCCCAAGATTGCCAACTCCATTTCTAGATTCCTTGTCCGTGCCGCTGACGACGGGGCTGCCCCGACCGCTGCCACCGCCCTCGAAGAGCCCAAGCCTAAGCCTGCCCCAATTGGCCCCAAGAGAGGTGCCAAGGTGAAGATTCTAAGAAGAGAGTCCTACTGGTTCAAGGATGTTGGATCTGTTGTAACAGTTGACCAGGACCCAAACACTCGATATCCTGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAA MAASNLSCIASGLVIPSSPTISSSSKLSNSVAFSPKIANSISRFLVRAADDGAAPTAATALEEPKPKPAPIGPKRGAKVKILRRESYWFKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA Homology
BLAST of Sed0015250 vs. NCBI nr
Match: XP_004152807.2 (photosystem I reaction center subunit IV, chloroplastic [Cucumis sativus]) HSP 1 Score: 201.8 bits (512), Expect = 3.6e-48 Identity = 112/142 (78.87%), Postives = 123/142 (86.62%), Query Frame = 0
BLAST of Sed0015250 vs. NCBI nr
Match: KAE8651724.1 (hypothetical protein Csa_006032 [Cucumis sativus]) HSP 1 Score: 201.8 bits (512), Expect = 3.6e-48 Identity = 112/142 (78.87%), Postives = 123/142 (86.62%), Query Frame = 0
BLAST of Sed0015250 vs. NCBI nr
Match: XP_008441802.1 (PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis melo]) HSP 1 Score: 197.2 bits (500), Expect = 9.0e-47 Identity = 114/145 (78.62%), Postives = 122/145 (84.14%), Query Frame = 0
BLAST of Sed0015250 vs. NCBI nr
Match: XP_038889433.1 (photosystem I reaction center subunit IV, chloroplastic-like [Benincasa hispida]) HSP 1 Score: 195.3 bits (495), Expect = 3.4e-46 Identity = 113/145 (77.93%), Postives = 122/145 (84.14%), Query Frame = 0
BLAST of Sed0015250 vs. NCBI nr
Match: KAG6598956.1 (Photosystem I reaction center subunit IV, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 194.1 bits (492), Expect = 7.6e-46 Identity = 106/135 (78.52%), Postives = 116/135 (85.93%), Query Frame = 0
BLAST of Sed0015250 vs. ExPASy Swiss-Prot
Match: Q9S831 (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAE1 PE=1 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 1.7e-32 Identity = 83/136 (61.03%), Postives = 100/136 (73.53%), Query Frame = 0
BLAST of Sed0015250 vs. ExPASy Swiss-Prot
Match: Q41229 (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEB PE=1 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 8.5e-32 Identity = 80/142 (56.34%), Postives = 102/142 (71.83%), Query Frame = 0
BLAST of Sed0015250 vs. ExPASy Swiss-Prot
Match: Q41228 (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEA PE=1 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 7.2e-31 Identity = 79/142 (55.63%), Postives = 100/142 (70.42%), Query Frame = 0
BLAST of Sed0015250 vs. ExPASy Swiss-Prot
Match: P12354 (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAE-1 PE=1 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 2.1e-30 Identity = 68/97 (70.10%), Postives = 80/97 (82.47%), Query Frame = 0
BLAST of Sed0015250 vs. ExPASy Swiss-Prot
Match: P13194 (Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAE PE=1 SV=2) HSP 1 Score: 126.7 bits (317), Expect = 2.0e-28 Identity = 78/148 (52.70%), Postives = 97/148 (65.54%), Query Frame = 0
BLAST of Sed0015250 vs. ExPASy TrEMBL
Match: A0A0A0LJQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079660 PE=3 SV=1) HSP 1 Score: 201.8 bits (512), Expect = 1.8e-48 Identity = 112/142 (78.87%), Postives = 123/142 (86.62%), Query Frame = 0
BLAST of Sed0015250 vs. ExPASy TrEMBL
Match: A0A1S3B3T3 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103485855 PE=3 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 4.3e-47 Identity = 114/145 (78.62%), Postives = 122/145 (84.14%), Query Frame = 0
BLAST of Sed0015250 vs. ExPASy TrEMBL
Match: A0A6J1CRI6 (photosystem I reaction center subunit IV, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111014100 PE=3 SV=1) HSP 1 Score: 194.1 bits (492), Expect = 3.7e-46 Identity = 113/142 (79.58%), Postives = 121/142 (85.21%), Query Frame = 0
BLAST of Sed0015250 vs. ExPASy TrEMBL
Match: A0A6J1HLT8 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111465716 PE=3 SV=1) HSP 1 Score: 192.6 bits (488), Expect = 1.1e-45 Identity = 114/144 (79.17%), Postives = 121/144 (84.03%), Query Frame = 0
BLAST of Sed0015250 vs. ExPASy TrEMBL
Match: A0A6J1FC09 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111444038 PE=3 SV=1) HSP 1 Score: 189.9 bits (481), Expect = 6.9e-45 Identity = 113/144 (78.47%), Postives = 120/144 (83.33%), Query Frame = 0
BLAST of Sed0015250 vs. TAIR 10
Match: AT4G28750.1 (Photosystem I reaction centre subunit IV / PsaE protein ) HSP 1 Score: 140.2 bits (352), Expect = 1.2e-33 Identity = 83/136 (61.03%), Postives = 100/136 (73.53%), Query Frame = 0
BLAST of Sed0015250 vs. TAIR 10
Match: AT2G20260.1 (photosystem I subunit E-2 ) HSP 1 Score: 125.6 bits (314), Expect = 3.1e-29 Identity = 77/143 (53.85%), Postives = 99/143 (69.23%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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