Sed0015110 (gene) Chayote v1

Overview


Name	Sed0015110
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CST complex subunit STN1
Location	LG04: 36057833 .. 36058551 (+)
RNA-Seq Expression	Sed0015110
Synteny	Sed0015110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAACAACAACAAGCACTGTACAACACCCACATAAAGCTCCTGTGTTTCGACCTCAATTCACTCGCCCCAACAAACCCTTCTTCTTCTTCTTCCTCGGATCCGATCTCCTTCTCTCGCAAATCCTACGCCGTTTCTCGCGCAGAGATCGCCGGCGTCGTCGTCTCTTGCGACCTGAAACCTAATCGCTTTCTCAAATTCTCCGTCGACGATGGCACCGCCACTGTTTCCTGTATCCTCTGGCTCAACCATCACACATCACCTTATTTTGCATCGCGCCGCCACCCTCCGGATGTTCGATTCATTGCAGGTGTGGCGGCCCATTTCGCCGCCCAAATTAGGGTTGGGATTCTCGCTAGGGTTCGGGGAAGGTTGAGCTGCTATAGAGGCCAGGTGCAGCTCACGGTGTCTGATGTTGTGGCGGAGCACGATCCCAATGCTGAGATTCTGCATTGGTTGGATTGTATCAGGTTAGCTCGAAAGTGTTATGATCTCGTTCCTTTGCCCACGTAGCTGTATTTGTAGATGTAGATGATTTTTTCCTGATTTTTGTTCAAATTTTGCATAAGAGAGTTGTTACCGACTGTGTTTTGTTTGATGGAAATGGCTAAAAGTGGAACCAGGAAATTGATGCTTTGTAACCAAGTAATGAAACTCTTTTGTATTGGATCGTGGATTTAATCTAATGGAGATTTGGGACTATAAAACCATTTACC

mRNA sequence

ATGGAGCAACAACAACAAGCACTGTACAACACCCACATAAAGCTCCTGTGTTTCGACCTCAATTCACTCGCCCCAACAAACCCTTCTTCTTCTTCTTCCTCGGATCCGATCTCCTTCTCTCGCAAATCCTACGCCGTTTCTCGCGCAGAGATCGCCGGCGTCGTCGTCTCTTGCGACCTGAAACCTAATCGCTTTCTCAAATTCTCCGTCGACGATGGCACCGCCACTGTTTCCTGTATCCTCTGGCTCAACCATCACACATCACCTTATTTTGCATCGCGCCGCCACCCTCCGGATGTTCGATTCATTGCAGGTGTGGCGGCCCATTTCGCCGCCCAAATTAGGGTTGGGATTCTCGCTAGGGTTCGGGGAAGGTTGAGCTGCTATAGAGGCCAGGTGCAGCTCACGGTGTCTGATGTTGTGGCGGAGCACGATCCCAATGCTGAGATTCTGCATTGGTTGGATTGTATCAGGTTAGCTCGAAAGTGTTATGATCTCGTTCCTTTGCCCACGTAGCTGTATTTGTAGATGTAGATGATTTTTTCCTGATTTTTGTTCAAATTTTGCATAAGAGAGTTGTTACCGACTGTGTTTTGTTTGATGGAAATGGCTAAAAGTGGAACCAGGAAATTGATGCTTTGTAACCAAGTAATGAAACTCTTTTGTATTGGATCGTGGATTTAATCTAATGGAGATTTGGGACTATAAAACCATTTACC

Coding sequence (CDS)

ATGGAGCAACAACAACAAGCACTGTACAACACCCACATAAAGCTCCTGTGTTTCGACCTCAATTCACTCGCCCCAACAAACCCTTCTTCTTCTTCTTCCTCGGATCCGATCTCCTTCTCTCGCAAATCCTACGCCGTTTCTCGCGCAGAGATCGCCGGCGTCGTCGTCTCTTGCGACCTGAAACCTAATCGCTTTCTCAAATTCTCCGTCGACGATGGCACCGCCACTGTTTCCTGTATCCTCTGGCTCAACCATCACACATCACCTTATTTTGCATCGCGCCGCCACCCTCCGGATGTTCGATTCATTGCAGGTGTGGCGGCCCATTTCGCCGCCCAAATTAGGGTTGGGATTCTCGCTAGGGTTCGGGGAAGGTTGAGCTGCTATAGAGGCCAGGTGCAGCTCACGGTGTCTGATGTTGTGGCGGAGCACGATCCCAATGCTGAGATTCTGCATTGGTTGGATTGTATCAGGTTAGCTCGAAAGTGTTATGATCTCGTTCCTTTGCCCACGTAG

Protein sequence

MEQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAGVAAHFAAQIRVGILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLPT

Homology

[Close]

BLAST of Sed0015110 vs. NCBI nr
Match: XP_023553655.1 (CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553656.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553657.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.7 bits (626), Expect = 2.8e-61
Identity = 125/169 (73.96%), Postives = 141/169 (83.43%), Query Frame = 0


Query: 2   EQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLK 61
           +Q+  +LY+THIKLL FDLNSLA +  SSSSSSD +SFSR+ YAVS  E+ GVVV  DLK
Sbjct: 3   QQRAFSLYHTHIKLLGFDLNSLAQS--SSSSSSDAVSFSRRGYAVSCVEVVGVVVFRDLK 62

Query: 62  PNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAGVAAHFAAQIRVGILAR 121
           PNRFL+FSVDDGT  VSCILWLNH TSPYFAS RH PDVR I  +A HFAAQIRVGI+AR
Sbjct: 63  PNRFLRFSVDDGTGCVSCILWLNHLTSPYFAS-RHQPDVRIIGNMATHFAAQIRVGIVAR 122

Query: 122 VRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLP 171
           VRG++S YRG VQ+TVSDVV E+DPNAEILHWLDC+RLA KCYDL P P
Sbjct: 123 VRGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 168

[Close]

BLAST of Sed0015110 vs. NCBI nr
Match: XP_022963452.1 (LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata])

HSP 1 Score: 245.7 bits (626), Expect = 2.8e-61
Identity = 126/169 (74.56%), Postives = 140/169 (82.84%), Query Frame = 0


Query: 2   EQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLK 61
           +Q+  +LY+THIKLL FDLNSL  T  +SSSSSD +SFSR+ YAVS  EI GVVV  DLK
Sbjct: 43  QQRAFSLYHTHIKLLGFDLNSL--TQSASSSSSDAVSFSRRGYAVSCVEIVGVVVFRDLK 102

Query: 62  PNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAGVAAHFAAQIRVGILAR 121
           PNRFL+FSVDDGT  VSCILWLNH TSPYFAS RH PDVR I  +A HFAAQIRVGI+AR
Sbjct: 103 PNRFLRFSVDDGTGCVSCILWLNHLTSPYFAS-RHQPDVRIIGNMATHFAAQIRVGIVAR 162

Query: 122 VRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLP 171
           VRGR+S YRG VQ+TVSDVV E+DPNAEILHWLDC+RLA KCYDL P P
Sbjct: 163 VRGRVSSYRGVVQMTVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 208

[Close]

BLAST of Sed0015110 vs. NCBI nr
Match: KAG6571457.1 (CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243.0 bits (619), Expect = 1.8e-60
Identity = 124/169 (73.37%), Postives = 140/169 (82.84%), Query Frame = 0


Query: 2   EQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLK 61
           +Q+  +LY+THIKLL FDLNSL  ++ SSSSSSD +SFSR+ YAVS  EI GVVV  DLK
Sbjct: 22  QQRAFSLYHTHIKLLGFDLNSLTQSS-SSSSSSDAVSFSRRGYAVSCVEIVGVVVFRDLK 81

Query: 62  PNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAGVAAHFAAQIRVGILAR 121
           PNRFL+FSVDDGT  VSCILWLNH TSPYFA  RH PDVR I  +A HFAAQIRVGI+AR
Sbjct: 82  PNRFLRFSVDDGTGCVSCILWLNHLTSPYFA-LRHQPDVRIIGNMATHFAAQIRVGIVAR 141

Query: 122 VRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLP 171
           VRG++S YRG VQ+TVSDVV E+DPNAEILHWLDC+RLA KCYDL P P
Sbjct: 142 VRGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 188

[Close]

BLAST of Sed0015110 vs. NCBI nr
Match: KAG7011223.1 (CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.0 bits (619), Expect = 1.8e-60
Identity = 124/169 (73.37%), Postives = 140/169 (82.84%), Query Frame = 0


Query: 2   EQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLK 61
           +Q+  +LY+THIKLL FDLNSL  ++ SSSSSSD +SFSR+ YAVS  EI GVVV  DLK
Sbjct: 3   QQRAFSLYHTHIKLLGFDLNSLTQSS-SSSSSSDAVSFSRRGYAVSCVEIVGVVVFRDLK 62

Query: 62  PNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAGVAAHFAAQIRVGILAR 121
           PNRFL+FSVDDGT  VSCILWLNH TSPYFA  RH PDVR I  +A HFAAQIRVGI+AR
Sbjct: 63  PNRFLRFSVDDGTGCVSCILWLNHLTSPYFA-LRHQPDVRIIGNMATHFAAQIRVGIVAR 122

Query: 122 VRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLP 171
           VRG++S YRG VQ+TVSDVV E+DPNAEILHWLDC+RLA KCYDL P P
Sbjct: 123 VRGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 169

[Close]

BLAST of Sed0015110 vs. NCBI nr
Match: KAA0057432.1 (CST complex subunit STN1 [Cucumis melo var. makuwa] >TYK30131.1 CST complex subunit STN1 [Cucumis melo var. makuwa])

HSP 1 Score: 237.7 bits (605), Expect = 7.6e-59
Identity = 124/174 (71.26%), Postives = 138/174 (79.31%), Query Frame = 0


Query: 1   MEQQQQ---ALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVS 60
           M Q+Q+   +LY TH+KLL FDLNSL     + +SSSD +SFSRK YAVS  EI GVVV 
Sbjct: 1   MNQRQRFSFSLYQTHVKLLGFDLNSL-----NQNSSSDSVSFSRKGYAVSCTEIVGVVVF 60

Query: 61  CDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAGVAAHFAAQIRVG 120
            DLKPNRFLKFSVDDGTA V CILWLNH TS YFASR H PDVR +A +A HFAAQIRVG
Sbjct: 61  RDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH-PDVRILADMATHFAAQIRVG 120

Query: 121 ILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLPT 172
           I+ RVRG+LS YRG VQ+TVSDVV E DPNAEILHWLD +RLA KCYDL P+PT
Sbjct: 121 IVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 168

[Close]

BLAST of Sed0015110 vs. ExPASy Swiss-Prot
Match: Q9LMK5 (CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.3e-34
Identity = 78/159 (49.06%), Postives = 104/159 (65.41%), Query Frame = 0


Query: 6   QALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRF 65
           ++L +TH KL+  D+  L   +P+ S+S   +        VSR EI G +VS DL P +F
Sbjct: 3   RSLQSTHAKLVARDIQRLT-QSPTESNSFSLLG----GACVSRVEIVGTIVSRDLTP-KF 62

Query: 66  LKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAGVAAHFAAQIRVGILARVRGR 125
           LKF VDDGT  V+C++WLN  TS YF SR  P  +  +A  A   AAQIR+G +ARVRGR
Sbjct: 63  LKFGVDDGTGCVTCVMWLNQLTSSYF-SRWDPATILLLASAARKQAAQIRIGAVARVRGR 122

Query: 126 LSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCY 165
           +  YRG +Q+T +  VAE DPNAEILHWL+C++L + CY
Sbjct: 123 VGSYRGVMQITANVAVAERDPNAEILHWLECLKLGQSCY 154

[Close]

BLAST of Sed0015110 vs. ExPASy TrEMBL
Match: A0A6J1HFA9 (LOW QUALITY PROTEIN: CST complex subunit STN1 OS=Cucurbita moschata OX=3662 GN=LOC111463780 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.4e-61
Identity = 126/169 (74.56%), Postives = 140/169 (82.84%), Query Frame = 0


Query: 2   EQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLK 61
           +Q+  +LY+THIKLL FDLNSL  T  +SSSSSD +SFSR+ YAVS  EI GVVV  DLK
Sbjct: 43  QQRAFSLYHTHIKLLGFDLNSL--TQSASSSSSDAVSFSRRGYAVSCVEIVGVVVFRDLK 102

Query: 62  PNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAGVAAHFAAQIRVGILAR 121
           PNRFL+FSVDDGT  VSCILWLNH TSPYFAS RH PDVR I  +A HFAAQIRVGI+AR
Sbjct: 103 PNRFLRFSVDDGTGCVSCILWLNHLTSPYFAS-RHQPDVRIIGNMATHFAAQIRVGIVAR 162

Query: 122 VRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLP 171
           VRGR+S YRG VQ+TVSDVV E+DPNAEILHWLDC+RLA KCYDL P P
Sbjct: 163 VRGRVSSYRGVVQMTVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 208

[Close]

BLAST of Sed0015110 vs. ExPASy TrEMBL
Match: A0A5D3E3H2 (CST complex subunit STN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001150 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.7e-59
Identity = 124/174 (71.26%), Postives = 138/174 (79.31%), Query Frame = 0


Query: 1   MEQQQQ---ALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVS 60
           M Q+Q+   +LY TH+KLL FDLNSL     + +SSSD +SFSRK YAVS  EI GVVV 
Sbjct: 1   MNQRQRFSFSLYQTHVKLLGFDLNSL-----NQNSSSDSVSFSRKGYAVSCTEIVGVVVF 60

Query: 61  CDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAGVAAHFAAQIRVG 120
            DLKPNRFLKFSVDDGTA V CILWLNH TS YFASR H PDVR +A +A HFAAQIRVG
Sbjct: 61  RDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH-PDVRILADMATHFAAQIRVG 120

Query: 121 ILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLPT 172
           I+ RVRG+LS YRG VQ+TVSDVV E DPNAEILHWLD +RLA KCYDL P+PT
Sbjct: 121 IVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 168

[Close]

BLAST of Sed0015110 vs. ExPASy TrEMBL
Match: A0A1S3BLT5 (CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.7e-59
Identity = 124/174 (71.26%), Postives = 138/174 (79.31%), Query Frame = 0


Query: 1   MEQQQQ---ALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVS 60
           M Q+Q+   +LY TH+KLL FDLNSL     + +SSSD +SFSRK YAVS  EI GVVV 
Sbjct: 51  MNQRQRFSFSLYQTHVKLLGFDLNSL-----NQNSSSDSVSFSRKGYAVSCTEIVGVVVF 110

Query: 61  CDLKPNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAGVAAHFAAQIRVG 120
            DLKPNRFLKFSVDDGTA V CILWLNH TS YFASR H PDVR +A +A HFAAQIRVG
Sbjct: 111 RDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH-PDVRILADMATHFAAQIRVG 170

Query: 121 ILARVRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLPT 172
           I+ RVRG+LS YRG VQ+TVSDVV E DPNAEILHWLD +RLA KCYDL P+PT
Sbjct: 171 IVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 218

[Close]

BLAST of Sed0015110 vs. ExPASy TrEMBL
Match: A0A0A0LNV0 (OB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.2e-57
Identity = 119/165 (72.12%), Postives = 130/165 (78.79%), Query Frame = 0


Query: 7   ALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRFL 66
           +LY TH+KLL FDLNSL     + +SSSD +SFSRK YAVS  EI GVVV  DLKPNRFL
Sbjct: 10  SLYQTHVKLLAFDLNSL-----NQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFL 69

Query: 67  KFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAGVAAHFAAQIRVGILARVRGRL 126
           KFSVDDGTA V CILWLNH TS YFASR H  DVR +  +A HFAAQIRVGI+ RVRG+L
Sbjct: 70  KFSVDDGTACVGCILWLNHLTSSYFASRHH-QDVRILGDMATHFAAQIRVGIVVRVRGKL 129

Query: 127 SCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCYDLVPLPT 172
           S YRG VQ+TVSDVV E DPNAEILHWLD +RLA KCYDL P PT
Sbjct: 130 SSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 168

[Close]

BLAST of Sed0015110 vs. ExPASy TrEMBL
Match: A0A6J1HUX0 (CST complex subunit STN1 OS=Cucurbita maxima OX=3661 GN=LOC111466921 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 5.0e-56
Identity = 117/156 (75.00%), Postives = 132/156 (84.62%), Query Frame = 0


Query: 2   EQQQQALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLK 61
           +Q+  +LY+THIKLL FDLNSL  T  SSSSSSD +SFSR+ +AVS AEI GVVVS DLK
Sbjct: 21  QQRAFSLYHTHIKLLGFDLNSL--TQSSSSSSSDAVSFSRRGFAVSCAEIVGVVVSRDLK 80

Query: 62  PNRFLKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAGVAAHFAAQIRVGILAR 121
           PNRFL+FSVDDGT  VSCILWLNH TSPYFAS RH PDVR I  +A HFAAQIRVGI+AR
Sbjct: 81  PNRFLRFSVDDGTGCVSCILWLNHLTSPYFAS-RHQPDVRIIGNMATHFAAQIRVGIVAR 140

Query: 122 VRGRLSCYRGQVQLTVSDVVAEHDPNAEILHWLDCI 158
           VRG++S YRG VQ+TVSDVV E+DPNAEILHWLDC+
Sbjct: 141 VRGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCM 173

[Close]

BLAST of Sed0015110 vs. TAIR 10
Match: AT1G07130.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-35
Identity = 78/159 (49.06%), Postives = 104/159 (65.41%), Query Frame = 0


Query: 6   QALYNTHIKLLCFDLNSLAPTNPSSSSSSDPISFSRKSYAVSRAEIAGVVVSCDLKPNRF 65
           ++L +TH KL+  D+  L   +P+ S+S   +        VSR EI G +VS DL P +F
Sbjct: 3   RSLQSTHAKLVARDIQRLT-QSPTESNSFSLLG----GACVSRVEIVGTIVSRDLTP-KF 62

Query: 66  LKFSVDDGTATVSCILWLNHHTSPYFASRRHPPDVRFIAGVAAHFAAQIRVGILARVRGR 125
           LKF VDDGT  V+C++WLN  TS YF SR  P  +  +A  A   AAQIR+G +ARVRGR
Sbjct: 63  LKFGVDDGTGCVTCVMWLNQLTSSYF-SRWDPATILLLASAARKQAAQIRIGAVARVRGR 122

Query: 126 LSCYRGQVQLTVSDVVAEHDPNAEILHWLDCIRLARKCY 165
           +  YRG +Q+T +  VAE DPNAEILHWL+C++L + CY
Sbjct: 123 VGSYRGVMQITANVAVAERDPNAEILHWLECLKLGQSCY 154

The following BLAST results are available for this feature:

BLAST of Sed0015110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553655.1	2.8e-61	73.96	CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553656.1 CST comple...	[more]
XP_022963452.1	2.8e-61	74.56	LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata]	[more]
KAG6571457.1	1.8e-60	73.37	CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7011223.1	1.8e-60	73.37	CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAA0057432.1	7.6e-59	71.26	CST complex subunit STN1 [Cucumis melo var. makuwa] >TYK30131.1 CST complex subu...	[more]

BLAST of Sed0015110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMK5	2.3e-34	49.06	CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1	[more]

BLAST of Sed0015110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HFA9	1.4e-61	74.56	LOW QUALITY PROTEIN: CST complex subunit STN1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5D3E3H2	3.7e-59	71.26	CST complex subunit STN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BLT5	3.7e-59	71.26	CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1	[more]
A0A0A0LNV0	1.2e-57	72.12	OB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=...	[more]
A0A6J1HUX0	5.0e-56	75.00	CST complex subunit STN1 OS=Cucurbita maxima OX=3661 GN=LOC111466921 PE=4 SV=1	[more]

BLAST of Sed0015110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07130.1	1.7e-35	49.06	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004365	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	PFAM	PF01336	tRNA_anti-codon	coord: 51..140 e-value: 8.7E-8 score: 32.0
None	No IPR available	GENE3D	2.40.50.140		coord: 3..167 e-value: 2.5E-26 score: 93.9
None	No IPR available	PANTHER	PTHR13989:SF33	CST COMPLEX SUBUNIT STN1	coord: 7..166
IPR040260	Replication factor A protein-like	PANTHER	PTHR13989	REPLICATION PROTEIN A-RELATED	coord: 7..166
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 39..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015110.1	Sed0015110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0008033	tRNA processing
biological_process	GO:0070525	tRNA threonylcarbamoyladenosine metabolic process
cellular_component	GO:0000408	EKC/KEOPS complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0106310	protein serine kinase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0004712	protein serine/threonine/tyrosine kinase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003676	nucleic acid binding