Sed0015002 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACGCAAAAGGATTTAGCCGCAGATCACAACAAAGAGAAGATGAAGAAGAAGAGTTATGGTGATCTGAAGACATTGATTTTGAAGTGGGGAAACCATAAACACCGAATCCCTATTAGCCTTGACCCTCCAGCTTCTTCGCCCGAGCCCGAGCCAGTGCCGCCTCCACGTCCTTCATCAGTGCCTTGGAATCTAAGGGATCGAAATAGAATTTATCGTCCGAAGAAACTAGTGGCGGAAACGAGGACTTCCACACTGAACACGAAGGAGCCGATGCTCAAGTTTGCGGTGTCGTTGTCGGAATCGGAGATCGTGAAAGATTTCTTAAAGATGACTGGGACGATGCCCCCATCCAAACCCAAGAAGAGAGTTAGAGCTATTCAGCGAAACCTAGATGTAAGCCCTAATGAAATATGTTCATTACTATTTTTATTTCATTTTTTGATATCGTGTAAGTGTGTGGTCCAACTTACGTGCACATTGACTATTTGATACGCCCCTGATTATAAATGTGTATAGGCATAGAAAAGAGAGGATGAAAGATAGAGAATGAGTGCGTGTAGTACATTTAGTGGGCCCTAGTTTGTAACTGTGTCATCATCATTTCGGCTTTCAACCCAACTGGTTGAAGTTTCCGAAGCTGAGTCCACTTTCAAACTTCCCTTCTAGCACCTCATTGTCTATCCCGCTCAGTCCGACAACATATTTCTCAAACTTTCGGCGATAATCTCGAACGACGGTCACTTATCAATAATTGCCAGAAGGCTGTCCATGTTGCTATCGGACCCCTCTCTTTTTTCCATCCATTGATGCCAGTTGAGAGCCTCCCCGGCCTCTAGACACAATACGATATCTTCCAACTTATCCTTCTCCGTTAAACGGTTCACTATGAAGTATCGTTTAAGTCGGTGCAACCACCCATCCATATCAACCTCCCCTTTGAATATCGGTACCTCCAGCTTGCGTAAACGCATATCAAATAATGGGACCTCGCAGATTATCCCTCCATCCTCCTTTGTTTTTCTGCTGTCTTCTTTCCATTTCTGCGTCAACTCTACTTCCATATCCCTCACTATATTGATCTCATTTTCGATCTCGTTGAACATTGTCTTTCATTTCCTCCCGCATTAGCGCAAACTGTAGATCCATACGAGTTTCCAATGCGGTCTGCTGCTCTTTCGCCTCTTCGAACTGTTGAACCATCTTCACCTTAATCTCAGTCTCCCTGGTCACAACCAACACCATTCCTTCCTCCAAATCCACAATTCTTGACTCCATTCTACCCACCATTACCCAGCAAAATACTCCAATACCAAAATGTTAGGCTCTGGCCTAAGACAATTTGATTACTAATAGCAAAAATCAAAATAGAGAGTTTAGAGAGCTATTGGCTCTCCCAAAGTACTCAAAGAATTACCAACATGACAGACCAAAAAAGTGAAGAAAAACAAAACAGCCATAAGGGCACACACACTCTTAAGGCAAAACTTCACACACACTCATTCTCTATCTTTCATCCTCTCTTTCCTACGCCTATACACTTCTACAATCGGGAGCCTATCACTATCCTCACGAGATATTCTGTCTGACCTTACAAACATTTGGATGTTAAGAAAATTTATAGGAAGTTATTTTTCTAAATAAGTGGTCATCATGGATTAAATTTATCACCTCTTAATTACTCATAACACTAAGATTTATTTTAAATTATGATTTCATAATGATTATATGTACTTTATTTTGCAGACTATGAATTTTGGACATGATTTGGCCGACCTTTCAAGTGATAGATACCATGTTTTTGAACCATTCCCTACCATAAACAAGGTAATTATTTCAAATATAATCTCATGTTTTCTTAAGTTTTTTTACAAGAATTTTATCATCTTTTAA ATGACGCAAAAGGATTTAGCCGCAGATCACAACAAAGAGAAGATGAAGAAGAAGAGTTATGGTGATCTGAAGACATTGATTTTGAAGTGGGGAAACCATAAACACCGAATCCCTATTAGCCTTGACCCTCCAGCTTCTTCGCCCGAGCCCGAGCCAGTGCCGCCTCCACGTCCTTCATCAGTGCCTTGGAATCTAAGGGATCGAAATAGAATTTATCGTCCGAAGAAACTAGTGGCGGAAACGAGGACTTCCACACTGAACACGAAGGAGCCGATGCTCAAGTTTGCGGTGTCGTTGTCGGAATCGGAGATCGTGAAAGATTTCTTAAAGATGACTGGGACGATGCCCCCATCCAAACCCAAGAAGAGAGTTAGAGCTATTCAGCGAAACCTAGATACTATGAATTTTGGACATGATTTGGCCGACCTTTCAAGTGATAGATACCATGTTTTTGAACCATTCCCTACCATAAACAAGGTAATTATTTCAAATATAATCTCATGTTTTCTTAAGTTTTTTTACAAGAATTTTATCATCTTTTAA ATGACGCAAAAGGATTTAGCCGCAGATCACAACAAAGAGAAGATGAAGAAGAAGAGTTATGGTGATCTGAAGACATTGATTTTGAAGTGGGGAAACCATAAACACCGAATCCCTATTAGCCTTGACCCTCCAGCTTCTTCGCCCGAGCCCGAGCCAGTGCCGCCTCCACGTCCTTCATCAGTGCCTTGGAATCTAAGGGATCGAAATAGAATTTATCGTCCGAAGAAACTAGTGGCGGAAACGAGGACTTCCACACTGAACACGAAGGAGCCGATGCTCAAGTTTGCGGTGTCGTTGTCGGAATCGGAGATCGTGAAAGATTTCTTAAAGATGACTGGGACGATGCCCCCATCCAAACCCAAGAAGAGAGTTAGAGCTATTCAGCGAAACCTAGATACTATGAATTTTGGACATGATTTGGCCGACCTTTCAAGTGATAGATACCATGTTTTTGAACCATTCCCTACCATAAACAAGGTAATTATTTCAAATATAATCTCATGTTTTCTTAAGTTTTTTTACAAGAATTTTATCATCTTTTAA MTQKDLAADHNKEKMKKKSYGDLKTLILKWGNHKHRIPISLDPPASSPEPEPVPPPRPSSVPWNLRDRNRIYRPKKLVAETRTSTLNTKEPMLKFAVSLSESEIVKDFLKMTGTMPPSKPKKRVRAIQRNLDTMNFGHDLADLSSDRYHVFEPFPTINKVIISNIISCFLKFFYKNFIIF Homology
BLAST of Sed0015002 vs. NCBI nr
Match: XP_038875002.1 (uncharacterized protein LOC120067524 [Benincasa hispida]) HSP 1 Score: 80.1 bits (196), Expect = 2.1e-11 Identity = 66/174 (37.93%), Postives = 87/174 (50.00%), Query Frame = 0
BLAST of Sed0015002 vs. NCBI nr
Match: XP_039058146.1 (uncharacterized protein LOC120201642 [Hibiscus syriacus]) HSP 1 Score: 71.2 bits (173), Expect = 1.0e-08 Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 0
BLAST of Sed0015002 vs. NCBI nr
Match: XP_039018211.1 (uncharacterized protein LOC120149520 [Hibiscus syriacus]) HSP 1 Score: 68.9 bits (167), Expect = 5.0e-08 Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 0
BLAST of Sed0015002 vs. NCBI nr
Match: KAE8688012.1 (Detected protein of unknown function [Hibiscus syriacus]) HSP 1 Score: 68.9 bits (167), Expect = 5.0e-08 Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 0
BLAST of Sed0015002 vs. NCBI nr
Match: XP_021723407.1 (uncharacterized protein LOC110690834 [Chenopodium quinoa]) HSP 1 Score: 68.2 bits (165), Expect = 8.4e-08 Identity = 46/107 (42.99%), Postives = 59/107 (55.14%), Query Frame = 0
BLAST of Sed0015002 vs. ExPASy TrEMBL
Match: A0A7C9DKN9 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 4.0e-11 Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 0
BLAST of Sed0015002 vs. ExPASy TrEMBL
Match: A0A7C9DN95 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09 Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 0
BLAST of Sed0015002 vs. ExPASy TrEMBL
Match: A0A6A2ZAG5 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111005pilonHSYRG00155 PE=4 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 2.4e-08 Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 0
BLAST of Sed0015002 vs. ExPASy TrEMBL
Match: A0A803MPL6 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 4.1e-08 Identity = 46/107 (42.99%), Postives = 57/107 (53.27%), Query Frame = 0
BLAST of Sed0015002 vs. ExPASy TrEMBL
Match: A0A0L9TIU8 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan847s001200 PE=4 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 5.3e-08 Identity = 41/103 (39.81%), Postives = 58/103 (56.31%), Query Frame = 0
BLAST of Sed0015002 vs. TAIR 10
Match: AT1G68340.1 (Protein of unknown function (DUF1639) ) HSP 1 Score: 53.5 bits (127), Expect = 2.0e-07 Identity = 29/101 (28.71%), Postives = 51/101 (50.50%), Query Frame = 0
BLAST of Sed0015002 vs. TAIR 10
Match: AT3G60410.1 (Protein of unknown function (DUF1639) ) HSP 1 Score: 51.2 bits (121), Expect = 1.0e-06 Identity = 28/89 (31.46%), Postives = 50/89 (56.18%), Query Frame = 0
BLAST of Sed0015002 vs. TAIR 10
Match: AT3G60410.2 (Protein of unknown function (DUF1639) ) HSP 1 Score: 51.2 bits (121), Expect = 1.0e-06 Identity = 28/89 (31.46%), Postives = 50/89 (56.18%), Query Frame = 0
BLAST of Sed0015002 vs. TAIR 10
Match: AT3G60410.3 (Protein of unknown function (DUF1639) ) HSP 1 Score: 51.2 bits (121), Expect = 1.0e-06 Identity = 28/89 (31.46%), Postives = 50/89 (56.18%), Query Frame = 0
BLAST of Sed0015002 vs. TAIR 10
Match: AT3G18295.1 (Protein of unknown function (DUF1639) ) HSP 1 Score: 50.1 bits (118), Expect = 2.2e-06 Identity = 28/69 (40.58%), Postives = 42/69 (60.87%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|