Sed0014993 (gene) Chayote v1

Overview


Name	Sed0014993
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Histone H2A
Location	LG07: 2682975 .. 2683491 (+)
RNA-Seq Expression	Sed0014993
Synteny	Sed0014993

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCAACCGGCGCTCCGGCGAAGGGCGGCAGAGGCAAGAAATCCGCCGCCAAGTCCGTCACCAGATCTCACAAGGCCGGTCTACAATTCCCCGTCGGCCGTATCGCCAGGTACCTCAAGAAAGGCCGCTACGCTCAGCGCGTCGGCTCCGGCTCACCGGTCTACCTCTCCGCCGTTCTCGAATACCTAGCCGCCGAGGTTCGTAAGTCGTAATCGTCAATTTCATTTCGAGTTCAGATCTTCACTTCTCAGCGTTCTGATTTTGCTATTCTGTGGTTTCGTTTAGGTTTTGGAGTTGGCCGGCAATGCTGCGAGGGATAACAAGAAGAACAGAATCATTCCGAGGCACATTCAGTTAGCGGTGAGGAACGATGAAGAGTTGAGCAAGCTGTTAGGATCGGTCACGATCGCTAACGGAGGAGTTATGCCGAAGATTCATCAATCTCTTTTGCCGAAGAAGGCCGGCAACTCGAAGGACAAGGCTGAGATCGGATCGGCGTCTCAAGAATTCTAG

mRNA sequence

ATGAATTCAACCGGCGCTCCGGCGAAGGGCGGCAGAGGCAAGAAATCCGCCGCCAAGTCCGTCACCAGATCTCACAAGGCCGGTCTACAATTCCCCGTCGGCCGTATCGCCAGGTACCTCAAGAAAGGCCGCTACGCTCAGCGCGTCGGCTCCGGCTCACCGGTCTACCTCTCCGCCGTTCTCGAATACCTAGCCGCCGAGGTTTTGGAGTTGGCCGGCAATGCTGCGAGGGATAACAAGAAGAACAGAATCATTCCGAGGCACATTCAGTTAGCGGTGAGGAACGATGAAGAGTTGAGCAAGCTGTTAGGATCGGTCACGATCGCTAACGGAGGAGTTATGCCGAAGATTCATCAATCTCTTTTGCCGAAGAAGGCCGGCAACTCGAAGGACAAGGCTGAGATCGGATCGGCGTCTCAAGAATTCTAG

Coding sequence (CDS)

ATGAATTCAACCGGCGCTCCGGCGAAGGGCGGCAGAGGCAAGAAATCCGCCGCCAAGTCCGTCACCAGATCTCACAAGGCCGGTCTACAATTCCCCGTCGGCCGTATCGCCAGGTACCTCAAGAAAGGCCGCTACGCTCAGCGCGTCGGCTCCGGCTCACCGGTCTACCTCTCCGCCGTTCTCGAATACCTAGCCGCCGAGGTTTTGGAGTTGGCCGGCAATGCTGCGAGGGATAACAAGAAGAACAGAATCATTCCGAGGCACATTCAGTTAGCGGTGAGGAACGATGAAGAGTTGAGCAAGCTGTTAGGATCGGTCACGATCGCTAACGGAGGAGTTATGCCGAAGATTCATCAATCTCTTTTGCCGAAGAAGGCCGGCAACTCGAAGGACAAGGCTGAGATCGGATCGGCGTCTCAAGAATTCTAG

Protein sequence

MNSTGAPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQSLLPKKAGNSKDKAEIGSASQEF

Homology

[Close]

BLAST of Sed0014993 vs. NCBI nr
Match: KAG6575875.1 (Histone H2AX, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 257.3 bits (656), Expect = 7.7e-65
Identity = 134/142 (94.37%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MNSTGAPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           M+ST  P KGGRGKKSAAKSV+RSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPTKGGRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIA+GGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNSKDKAEIGSASQEF 143
           LLPKKAGN+K+KAEIGSASQEF
Sbjct: 121 LLPKKAGNAKNKAEIGSASQEF 142

[Close]

BLAST of Sed0014993 vs. NCBI nr
Match: XP_023548483.1 (histone H2AX-like [Cucurbita pepo subsp. pepo] >XP_023548484.1 histone H2AX-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.5 bits (654), Expect = 1.3e-64
Identity = 133/142 (93.66%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MNSTGAPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           M+ST  P KGGRGKKSAAK+V+RSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPTKGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQS 120
           LEYL AEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIA+GGVMPKIHQS
Sbjct: 61  LEYLVAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNSKDKAEIGSASQEF 143
           LLPKKAGN+KDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of Sed0014993 vs. NCBI nr
Match: XP_038896926.1 (histone H2AX-like [Benincasa hispida])

HSP 1 Score: 255.0 bits (650), Expect = 3.8e-64
Identity = 131/142 (92.25%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MNSTGAPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           M+ST  PAKGGRG+K++ KSV+RSHKAGLQFPVGR+ARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTDIPAKGGRGRKASTKSVSRSHKAGLQFPVGRVARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIA+GGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNSKDKAEIGSASQEF 143
           LLPKKAGN+KDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of Sed0014993 vs. NCBI nr
Match: KAG7025548.1 (hypothetical protein SDJN02_12044 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.0 bits (650), Expect = 3.8e-64
Identity = 132/142 (92.96%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MNSTGAPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           M+ST  PAKGGRGKKSA KSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPAKGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+PKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120

Query: 121 LLPKKAGNSKDKAEIGSASQEF 143
           LLPKKAG++KDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142

[Close]

BLAST of Sed0014993 vs. NCBI nr
Match: XP_022953582.1 (histone H2AX-like [Cucurbita moschata])

HSP 1 Score: 255.0 bits (650), Expect = 3.8e-64
Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MNSTGAPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           M+S   P KGGRGKKS AKSV+RSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 11  MSSNDVPTKGGRGKKSDAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 70

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIA+GGVMPKIHQS
Sbjct: 71  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 130

Query: 121 LLPKKAGNSKDKAEIGSASQEF 143
           LLPKKAGN+KDKAEIGSASQEF
Sbjct: 131 LLPKKAGNAKDKAEIGSASQEF 152

[Close]

BLAST of Sed0014993 vs. ExPASy Swiss-Prot
Match: P35063 (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.8e-56
Identity = 116/142 (81.69%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 1   MNSTGAPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           M+S+G  AKGGRGK  + KSV+RS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AV
Sbjct: 1   MSSSG--AKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLG+VTIANGGV+P IHQ 
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQV 120

Query: 121 LLPKKAGNSKDKAEIGSASQEF 143
           LLPKK+G  KDK EIGSASQEF
Sbjct: 121 LLPKKSG--KDKGEIGSASQEF 138

[Close]

BLAST of Sed0014993 vs. ExPASy Swiss-Prot
Match: O65759 (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 5.2e-56
Identity = 115/140 (82.14%), Postives = 126/140 (90.00%), Query Frame = 0


Query: 3   STGAPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLE 62
           S+ A  KGGRGK  A+KSV+RS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLE
Sbjct: 2   SSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61

Query: 63  YLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQSLL 122
           YLAAEVLELAGNAARDNK NRI+PRHIQLAVRNDEELSKLLGSVTIANGGV+P IHQ+LL
Sbjct: 62  YLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 121

Query: 123 PKKAGNSKDKAEIGSASQEF 143
           PKK G  K K EIGSASQEF
Sbjct: 122 PKKVG--KGKGEIGSASQEF 139

[Close]

BLAST of Sed0014993 vs. ExPASy Swiss-Prot
Match: O04848 (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.8e-55
Identity = 115/143 (80.42%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 3   STGA---PAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSA 62
           STGA     KGGRGK  A KSV+RS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSA
Sbjct: 2   STGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSA 61

Query: 63  VLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQ 122
           VLEYLAAEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIANGGV+P IHQ
Sbjct: 62  VLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 121

Query: 123 SLLPKKAGNSKDKAEIGSASQEF 143
           +LLP K G  K+K +IGSASQEF
Sbjct: 122 TLLPSKVG--KNKGDIGSASQEF 142

[Close]

BLAST of Sed0014993 vs. ExPASy Swiss-Prot
Match: A2ZL69 (Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.8e-55
Identity = 112/139 (80.58%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 4   TGAPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEY 63
           + A   GGRGK   +KSV+RS KAGLQFPVGRIARYLK G+YA+RVG+G+PVYLSAVLEY
Sbjct: 2   SSAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEY 61

Query: 64  LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQSLLP 123
           LAAEVLELAGNAARDNKKNRI+PRHIQLAVRNDEELS+LLG+VTIA GGV+P IHQ+LLP
Sbjct: 62  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLP 121

Query: 124 KKAGNSKDKAEIGSASQEF 143
           KK G  KDKA+IGSASQEF
Sbjct: 122 KKGG--KDKADIGSASQEF 138

[Close]

BLAST of Sed0014993 vs. ExPASy Swiss-Prot
Match: Q2QPG9 (Probable histone H2AXb OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.8e-55
Identity = 112/139 (80.58%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 4   TGAPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEY 63
           + A   GGRGK   +KSV+RS KAGLQFPVGRIARYLK G+YA+RVG+G+PVYLSAVLEY
Sbjct: 2   SSAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEY 61

Query: 64  LAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQSLLP 123
           LAAEVLELAGNAARDNKKNRI+PRHIQLAVRNDEELS+LLG+VTIA GGV+P IHQ+LLP
Sbjct: 62  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLP 121

Query: 124 KKAGNSKDKAEIGSASQEF 143
           KK G  KDKA+IGSASQEF
Sbjct: 122 KKGG--KDKADIGSASQEF 138

[Close]

BLAST of Sed0014993 vs. ExPASy TrEMBL
Match: A0A6J1GNM4 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111456076 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.9e-64
Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MNSTGAPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           M+S   P KGGRGKKS AKSV+RSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 11  MSSNDVPTKGGRGKKSDAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 70

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIA+GGVMPKIHQS
Sbjct: 71  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 130

Query: 121 LLPKKAGNSKDKAEIGSASQEF 143
           LLPKKAGN+KDKAEIGSASQEF
Sbjct: 131 LLPKKAGNAKDKAEIGSASQEF 152

[Close]

BLAST of Sed0014993 vs. ExPASy TrEMBL
Match: A0A6J1HB52 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111461202 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.9e-64
Identity = 132/142 (92.96%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MNSTGAPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           M+ST  PAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGR+AQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+PKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120

Query: 121 LLPKKAGNSKDKAEIGSASQEF 143
           LLPKKAG++KDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142

[Close]

BLAST of Sed0014993 vs. ExPASy TrEMBL
Match: A0A6J1L0A1 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111497905 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.2e-64
Identity = 131/142 (92.25%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MNSTGAPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           M+ST  PAK GRGKKSA KSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPAKAGRGKKSATKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+PKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120

Query: 121 LLPKKAGNSKDKAEIGSASQEF 143
           LLPKKAG++KDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142

[Close]

BLAST of Sed0014993 vs. ExPASy TrEMBL
Match: A0A0A0K525 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390240 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.6e-63
Identity = 131/142 (92.25%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MNSTGAPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           M+ST    KGGRGKK++ KSV+RSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIA+GGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNSKDKAEIGSASQEF 143
           LLPKKAGN+KDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of Sed0014993 vs. ExPASy TrEMBL
Match: A0A1S3BRH7 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492716 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.5e-63
Identity = 130/142 (91.55%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MNSTGAPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           M+ST    KGGRG+K++ KSV+RSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIA+GGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNSKDKAEIGSASQEF 143
           LLPKKAGN+KDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of Sed0014993 vs. TAIR 10
Match: AT1G08880.1 (Histone superfamily protein )

HSP 1 Score: 214.9 bits (546), Expect = 4.1e-56
Identity = 115/143 (80.42%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 3   STGA---PAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSA 62
           STGA     KGGRGK  A KSV+RS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSA
Sbjct: 2   STGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSA 61

Query: 63  VLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQ 122
           VLEYLAAEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIANGGV+P IHQ
Sbjct: 62  VLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 121

Query: 123 SLLPKKAGNSKDKAEIGSASQEF 143
           +LLP K G  K+K +IGSASQEF
Sbjct: 122 TLLPSKVG--KNKGDIGSASQEF 142

[Close]

BLAST of Sed0014993 vs. TAIR 10
Match: AT1G54690.1 (gamma histone variant H2AX )

HSP 1 Score: 214.2 bits (544), Expect = 7.0e-56
Identity = 111/134 (82.84%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 9   KGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEV 68
           KGGRGK  A KSV+RS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 69  LELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQSLLPKKAGN 128
           LELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIANGGV+P IHQ+LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG- 130

Query: 129 SKDKAEIGSASQEF 143
            K+K +IGSASQEF
Sbjct: 131 -KNKGDIGSASQEF 142

[Close]

BLAST of Sed0014993 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 195.7 bits (496), Expect = 2.6e-50
Identity = 103/128 (80.47%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 11  GRGKK----SAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 70
           GRGK     SA K+ TRS KAGLQFPVGRIAR+LKKG+YA+RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQSLLPKKA 130
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIANGGVMP IH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

Query: 131 GNSKDKAE 135
           G SK  AE
Sbjct: 123 GASKPSAE 130

[Close]

BLAST of Sed0014993 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-49
Identity = 101/128 (78.91%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 11  GRGKK----SAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 70
           GRGK+    +A KS +RS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQSLLPKKA 130
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIANGGVMP IH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

Query: 131 GNSKDKAE 135
           G+SK   E
Sbjct: 123 GSSKPTEE 130

[Close]

BLAST of Sed0014993 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-49
Identity = 101/128 (78.91%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 11  GRGKK----SAAKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 70
           GRGK+    +A KS +RS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHQSLLPKKA 130
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIANGGVMP IH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

Query: 131 GNSKDKAE 135
           G+SK   E
Sbjct: 123 GSSKPTEE 130

The following BLAST results are available for this feature:

BLAST of Sed0014993 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575875.1	7.7e-65	94.37	Histone H2AX, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023548483.1	1.3e-64	93.66	histone H2AX-like [Cucurbita pepo subsp. pepo] >XP_023548484.1 histone H2AX-like...	[more]
XP_038896926.1	3.8e-64	92.25	histone H2AX-like [Benincasa hispida]	[more]
KAG7025548.1	3.8e-64	92.96	hypothetical protein SDJN02_12044 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022953582.1	3.8e-64	93.66	histone H2AX-like [Cucurbita moschata]	[more]

BLAST of Sed0014993 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P35063	1.8e-56	81.69	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
O65759	5.2e-56	82.14	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
O04848	5.8e-55	80.42	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]
A2ZL69	5.8e-55	80.58	Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3...	[more]
Q2QPG9	5.8e-55	80.58	Probable histone H2AXb OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0530000 ...	[more]

BLAST of Sed0014993 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GNM4	1.9e-64	93.66	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111456076 PE=3 SV=1	[more]
A0A6J1HB52	1.9e-64	92.96	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111461202 PE=3 SV=1	[more]
A0A6J1L0A1	9.2e-64	92.25	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111497905 PE=3 SV=1	[more]
A0A0A0K525	1.6e-63	92.25	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390240 PE=3 SV=1	[more]
A0A1S3BRH7	3.5e-63	91.55	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492716 PE=3 SV=1	[more]

BLAST of Sed0014993 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08880.1	4.1e-56	80.42	Histone superfamily protein	[more]
AT1G54690.1	7.0e-56	82.84	gamma histone variant H2AX	[more]
AT1G51060.1	2.6e-50	80.47	histone H2A 10	[more]
AT4G27230.1	1.7e-49	78.91	histone H2A 2	[more]
AT4G27230.2	1.7e-49	78.91	histone H2A 2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 105..123 score: 62.46 coord: 77..91 score: 78.03 coord: 63..76 score: 89.46 coord: 48..63 score: 75.0 coord: 19..41 score: 67.99
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 8..128 e-value: 8.0E-76 score: 267.9
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 13..125 e-value: 7.85002E-67 score: 196.402
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 7..135 e-value: 1.1E-63 score: 214.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 22..125
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 97..130 e-value: 1.1E-17 score: 63.5
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 6..94 e-value: 2.9E-15 score: 56.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR23430:SF207	HISTONE H2A	coord: 7..140
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 7..140
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 27..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014993.1	Sed0014993.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity