Sed0014928 (gene) Chayote v1

Overview
NameSed0014928
Typegene
OrganismSechium edule (Chayote v1)
Descriptionglycine-rich cell wall structural protein 1-like
LocationLG05: 5343509 .. 5344625 (-)
RNA-Seq ExpressionSed0014928
SyntenySed0014928
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAAAAAAAGTTAAAAAAACAAAAGCTCCAATTTTGCATCCATGGCCTCTCAGCAATGCTGCAAACCAGCTCAGCCCAGCCAGCACCAGAAGCCTGACCAACACCAACAAGACCACTGCTTCGGCCACGTGTCCGACAAGATTAAAGGCATCTTCCAAGGCCACCATCACGGCCAAGGTCCGGTGGCGCACGGCCATCCGGGCCATGGCAGTGCCGATGGCCACTGCAAGGCTGCCGGGTCGAAGAAGAAGGAACATCGCAAAAAGAAAGAAGGGGGTTTGCTGCACAAGATTAAGGAGGCCTTCTCGGACCACAGCAGCAGTGATAGCAGTGACGATGAGTGTCACAAAAGGAAGGCAAGTTTTTTTCCTCCAACATTACTCTAAACATTTTTTATAAAGTTTTAGAAGGGTTGATAACCTAAGAAAAAATATTTTGTTTACCAAACATAGTTTTTTAAGTTTTGGATGTCAAGTTAAAGTAGTCGGGTGTTGTCCATAAAGATAATACAATTAAACTATTTTTTATTTTCTATTTTTCTCCTTTCTTTGTCAAGAATTGAATGACTACAAATAGATATCTACCAAGCCATGTATAAAAAAGATATCCAAGTTACGTAGTCAACAAGTTAATTATTTTAATTGCCTATAAATACTTGAAGTAATTTTGTTTTAATAAATAGAAGATTTACTATTTCAATTCATTTCTGTTTTTGCAGAACTGAAAGGAGGAAGAAGGTTACTAGATTGAAGGGAATGAGATAATGCCTTCAAACTACAACTACTAAAGAATTTAGTGACCAAAAGTAAAGATCTATCATGTGGGATAAATAAGACAATTTATGACACCCTTACTTTATCTACTTTGTGTTTCAAATAAACTTTTGTACACTATCTTTGTTACTGACATAATATAGAGCCAAATTATGCATGTCATTATGCATTTATTTTTTTCTTCAAGGAAATATTACATAACATGGATCCTAAAAATTGTTTAAAACAGAGTTGCTCCTGAACGGAGGATAAGCTTTTTGGATGTGTTTGAACCCCCGTTTATGTAAATGGCTGAATTGATTATAATAACACAACCGATATTTGCCCCACTA

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAGTTAAAAAAACAAAAGCTCCAATTTTGCATCCATGGCCTCTCAGCAATGCTGCAAACCAGCTCAGCCCAGCCAGCACCAGAAGCCTGACCAACACCAACAAGACCACTGCTTCGGCCACGTGTCCGACAAGATTAAAGGCATCTTCCAAGGCCACCATCACGGCCAAGGTCCGGTGGCGCACGGCCATCCGGGCCATGGCAGTGCCGATGGCCACTGCAAGGCTGCCGGGTCGAAGAAGAAGGAACATCGCAAAAAGAAAGAAGGGGGTTTGCTGCACAAGATTAAGGAGGCCTTCTCGGACCACAGCAGCAGTGATAGCAGTGACGATGAGTGTCACAAAAGGAAGAACTGAAAGGAGGAAGAAGGTTACTAGATTGAAGGGAATGAGATAATGCCTTCAAACTACAACTACTAAAGAATTTAGTGACCAAAAGTAAAGATCTATCATGTGGGATAAATAAGACAATTTATGACACCCTTACTTTATCTACTTTGTGTTTCAAATAAACTTTTGTACACTATCTTTGTTACTGACATAATATAGAGCCAAATTATGCATGTCATTATGCATTTATTTTTTTCTTCAAGGAAATATTACATAACATGGATCCTAAAAATTGTTTAAAACAGAGTTGCTCCTGAACGGAGGATAAGCTTTTTGGATGTGTTTGAACCCCCGTTTATGTAAATGGCTGAATTGATTATAATAACACAACCGATATTTGCCCCACTA

Coding sequence (CDS)

ATGGCCTCTCAGCAATGCTGCAAACCAGCTCAGCCCAGCCAGCACCAGAAGCCTGACCAACACCAACAAGACCACTGCTTCGGCCACGTGTCCGACAAGATTAAAGGCATCTTCCAAGGCCACCATCACGGCCAAGGTCCGGTGGCGCACGGCCATCCGGGCCATGGCAGTGCCGATGGCCACTGCAAGGCTGCCGGGTCGAAGAAGAAGGAACATCGCAAAAAGAAAGAAGGGGGTTTGCTGCACAAGATTAAGGAGGCCTTCTCGGACCACAGCAGCAGTGATAGCAGTGACGATGAGTGTCACAAAAGGAAGAACTGA

Protein sequence

MASQQCCKPAQPSQHQKPDQHQQDHCFGHVSDKIKGIFQGHHHGQGPVAHGHPGHGSADGHCKAAGSKKKEHRKKKEGGLLHKIKEAFSDHSSSDSSDDECHKRKN
Homology
BLAST of Sed0014928 vs. NCBI nr
Match: XP_008437383.1 (PREDICTED: uncharacterized protein LOC103482815 [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 71/110 (64.55%), Postives = 79/110 (71.82%), Query Frame = 0

Query: 1   MASQQCCKPAQPS--QH-QKPDQHQQDHCF-GHVSDKIKGIF-QGHHHGQGPVAHGHPGH 60
           MA QQC KPA  +  QH QK DQ    HCF GHVSDKIKG+F +GHHH Q   A G   H
Sbjct: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61  GSADGHCKAAGS-KKKEHRKKKEGGLLHKIKEAFSDHSS-SDSSDDECHK 104
            + D HCK +GS KKKEH+ KKEGGLLHKIKEAFSDHSS S  S++ECHK
Sbjct: 61  SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHK 110

BLAST of Sed0014928 vs. NCBI nr
Match: XP_038875375.1 (uncharacterized protein LOC120067846 [Benincasa hispida])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 71/113 (62.83%), Postives = 79/113 (69.91%), Query Frame = 0

Query: 1   MASQQCCKPAQPSQHQKPDQHQQDHCF-GHVSDKIKGIFQGHHHGQGPVAHGHPGHGSAD 60
           MAS QC KPA   Q QK DQ Q  HCF GHVSDKIKG+F+GHHHGQ P+A     H +  
Sbjct: 1   MASLQCNKPADHDQ-QKHDQ-QHHHCFGGHVSDKIKGVFKGHHHGQAPLASAPVHHSANA 60

Query: 61  GHCKAAGS-KKKEHRKKKEGGLLHKIKEAFSDHSS-SDSSDDEC----HKRKN 107
            HCK  GS KKKEH K KEGGLLHKIK+AFSDHSS S  S++EC    H +KN
Sbjct: 61  SHCKPTGSKKKKEHHKNKEGGLLHKIKDAFSDHSSDSSDSENECDKPHHNKKN 111

BLAST of Sed0014928 vs. NCBI nr
Match: XP_022146004.1 (uncharacterized protein LOC111015315 [Momordica charantia])

HSP 1 Score: 94.0 bits (232), Expect = 8.5e-16
Identity = 59/105 (56.19%), Postives = 68/105 (64.76%), Query Frame = 0

Query: 1   MASQQCCKPAQPSQHQKPDQHQQDHCFGHVSDKIKGIFQGH-HHGQGPVAHGHPGHGSAD 60
           MAS QC KPA   QH +  +H Q HCFGHVSDKIKG+F+GH HHGQ P A  H       
Sbjct: 1   MASLQCSKPAD-QQHSQNQKHDQGHCFGHVSDKIKGVFKGHGHHGQAPGAAPHHSTNVNA 60

Query: 61  GHCKAAGSKKKEHRKKKEGGLLHKIKEAFSDHSS-SDSSDDECHK 104
               +   K+KE  K K+G LLHKIK+AFSDHSS S  SD+E HK
Sbjct: 61  NANASVSHKEKEQHKNKDGNLLHKIKDAFSDHSSDSSDSDNEGHK 104

BLAST of Sed0014928 vs. NCBI nr
Match: KAA0042689.1 (uncharacterized protein E6C27_scaffold44G001870 [Cucumis melo var. makuwa] >TYK06092.1 uncharacterized protein E5676_scaffold376G001930 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 9.1e-10
Identity = 50/84 (59.52%), Postives = 56/84 (66.67%), Query Frame = 0

Query: 1  MASQQCCKPAQPS--QH-QKPDQHQQDHCF-GHVSDKIKGIF-QGHHHGQGPVAHGHPGH 60
          MA QQC KPA  +  QH QK DQ    HCF GHVSDKIKG+F +GHHH Q   A G   H
Sbjct: 1  MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61 GSADGHCKAAGS-KKKEHRKKKEG 79
           + D HCK +GS KKKEH+ KKEG
Sbjct: 61 SANDSHCKGSGSKKKKEHQVKKEG 84

BLAST of Sed0014928 vs. NCBI nr
Match: XP_022958513.1 (glycine-rich cell wall structural protein 1-like [Cucurbita moschata])

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-04
Identity = 41/99 (41.41%), Postives = 51/99 (51.52%), Query Frame = 0

Query: 9   PAQPSQHQKPDQHQQDHCFGHVSDKIKGIFQGHHHGQGP-VAHGHPGHGSADGHCKAAGS 68
           PA    H +   H      GH          GH     P V H  P   +  GHCKA GS
Sbjct: 431 PAGGHDHGQAGGHGHGPAGGHGHCMPANPNIGHCQPANPNVGHCQPASPNV-GHCKAGGS 490

Query: 69  KKKEHRKKKEGGLLHKIKEAFSDHSSSDSSDDECHKRKN 107
           +KK H K KEGG L+KIK+AFSDHS +  SDD+C + ++
Sbjct: 491 RKKGHHKNKEGGFLNKIKDAFSDHSDNSDSDDDCRRGRH 528

BLAST of Sed0014928 vs. ExPASy TrEMBL
Match: A0A1S3AUH3 (uncharacterized protein LOC103482815 OS=Cucumis melo OX=3656 GN=LOC103482815 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.5e-21
Identity = 71/110 (64.55%), Postives = 79/110 (71.82%), Query Frame = 0

Query: 1   MASQQCCKPAQPS--QH-QKPDQHQQDHCF-GHVSDKIKGIF-QGHHHGQGPVAHGHPGH 60
           MA QQC KPA  +  QH QK DQ    HCF GHVSDKIKG+F +GHHH Q   A G   H
Sbjct: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61  GSADGHCKAAGS-KKKEHRKKKEGGLLHKIKEAFSDHSS-SDSSDDECHK 104
            + D HCK +GS KKKEH+ KKEGGLLHKIKEAFSDHSS S  S++ECHK
Sbjct: 61  SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHK 110

BLAST of Sed0014928 vs. ExPASy TrEMBL
Match: A0A6J1CWW2 (uncharacterized protein LOC111015315 OS=Momordica charantia OX=3673 GN=LOC111015315 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.1e-16
Identity = 59/105 (56.19%), Postives = 68/105 (64.76%), Query Frame = 0

Query: 1   MASQQCCKPAQPSQHQKPDQHQQDHCFGHVSDKIKGIFQGH-HHGQGPVAHGHPGHGSAD 60
           MAS QC KPA   QH +  +H Q HCFGHVSDKIKG+F+GH HHGQ P A  H       
Sbjct: 1   MASLQCSKPAD-QQHSQNQKHDQGHCFGHVSDKIKGVFKGHGHHGQAPGAAPHHSTNVNA 60

Query: 61  GHCKAAGSKKKEHRKKKEGGLLHKIKEAFSDHSS-SDSSDDECHK 104
               +   K+KE  K K+G LLHKIK+AFSDHSS S  SD+E HK
Sbjct: 61  NANASVSHKEKEQHKNKDGNLLHKIKDAFSDHSSDSSDSDNEGHK 104

BLAST of Sed0014928 vs. ExPASy TrEMBL
Match: A0A5A7TMV4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001930 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.4e-10
Identity = 50/84 (59.52%), Postives = 56/84 (66.67%), Query Frame = 0

Query: 1  MASQQCCKPAQPS--QH-QKPDQHQQDHCF-GHVSDKIKGIF-QGHHHGQGPVAHGHPGH 60
          MA QQC KPA  +  QH QK DQ    HCF GHVSDKIKG+F +GHHH Q   A G   H
Sbjct: 1  MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61 GSADGHCKAAGS-KKKEHRKKKEG 79
           + D HCK +GS KKKEH+ KKEG
Sbjct: 61 SANDSHCKGSGSKKKKEHQVKKEG 84

BLAST of Sed0014928 vs. ExPASy TrEMBL
Match: A0A6J1H399 (glycine-rich cell wall structural protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111459722 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 41/99 (41.41%), Postives = 51/99 (51.52%), Query Frame = 0

Query: 9   PAQPSQHQKPDQHQQDHCFGHVSDKIKGIFQGHHHGQGP-VAHGHPGHGSADGHCKAAGS 68
           PA    H +   H      GH          GH     P V H  P   +  GHCKA GS
Sbjct: 431 PAGGHDHGQAGGHGHGPAGGHGHCMPANPNIGHCQPANPNVGHCQPASPNV-GHCKAGGS 490

Query: 69  KKKEHRKKKEGGLLHKIKEAFSDHSSSDSSDDECHKRKN 107
           +KK H K KEGG L+KIK+AFSDHS +  SDD+C + ++
Sbjct: 491 RKKGHHKNKEGGFLNKIKDAFSDHSDNSDSDDDCRRGRH 528

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008437383.11.1e-2064.55PREDICTED: uncharacterized protein LOC103482815 [Cucumis melo][more]
XP_038875375.11.5e-2062.83uncharacterized protein LOC120067846 [Benincasa hispida][more]
XP_022146004.18.5e-1656.19uncharacterized protein LOC111015315 [Momordica charantia][more]
KAA0042689.19.1e-1059.52uncharacterized protein E6C27_scaffold44G001870 [Cucumis melo var. makuwa] >TYK0... [more]
XP_022958513.12.6e-0441.41glycine-rich cell wall structural protein 1-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3AUH35.5e-2164.55uncharacterized protein LOC103482815 OS=Cucumis melo OX=3656 GN=LOC103482815 PE=... [more]
A0A6J1CWW24.1e-1656.19uncharacterized protein LOC111015315 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A5A7TMV44.4e-1059.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1H3991.2e-0441.41glycine-rich cell wall structural protein 1-like OS=Cucurbita moschata OX=3662 G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..39

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0014928.1Sed0014928.1mRNA