Sed0014621 (gene) Chayote v1

Overview


Name	Sed0014621
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Histone H2B
Location	LG01: 6465392 .. 6466314 (-)
RNA-Seq Expression	Sed0014621
Synteny	Sed0014621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAATCTCCAAATCGCTTTAACTCTGTTCCAAACCCTAAATCGAATTCCAATGGCACCGAAGGCCGAGAAGAAACCCGCCGAGAAGAAACCGGCGGAGGAGAAGAAGAGCGTAGCCGAAAAGGCTCCGGCGGAGAAGAAGCCGAAGGCCGGGAAGAAGCTGCCGAAGGAAGGAGGCGCCGCCGCCGGAGACAAGAAGAAGAAGAGGACGAAGAAGAGCGTCGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAGCAAGTCCATCCAGACATTGGAATCTCCAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAGTCCTCGAAGTTGGCTCGTTACAACAAGAAGCCCACCATCACTTCCCGCGAGATTCAGACGGCTGTGAGGCTTGTTCTTCCCGGTGAGTTGGCCAAACACGCCGTTTCTGAAGGTACTAAGGCTGTGACCAAATTCACCAGTTCTTGATTCCTCTGTTATGTCAAATTTGGGGTTCCGAATTCTCTGTTGTTCGAGAATGTATTCTGCTATGAAATTTGTAAAATTAGATTAGTGACTTTGTTTGCTCGTCTTGTTGTCTTTTTCTTTGATGGTTAAGGTTTTGATTTGTTGTGAACAATTGAATATTAATACAAGTTCAAGCCTACCTCAAATTAATGTCAAACTTGTTCATTGTTAACTTTCATAATAGCTTGGTAGTGATTAAACTTAATCACTTGTAACGTCTAAAATCTCTTGTTTTTTGTGTGATTGCTTCTGTATTTTTTGAGGTTTTAAATGGAATGCGTATATGCATCTCATAGTCTATTCAATGCGTTGAAGAAAGGCTCGTCGTTTTGGTTGAATTGGGCTTATATACATTGAGCTGTTAATAAATTCCTTTTTCATAGTTCTTA

mRNA sequence

ATCAATCTCCAAATCGCTTTAACTCTGTTCCAAACCCTAAATCGAATTCCAATGGCACCGAAGGCCGAGAAGAAACCCGCCGAGAAGAAACCGGCGGAGGAGAAGAAGAGCGTAGCCGAAAAGGCTCCGGCGGAGAAGAAGCCGAAGGCCGGGAAGAAGCTGCCGAAGGAAGGAGGCGCCGCCGCCGGAGACAAGAAGAAGAAGAGGACGAAGAAGAGCGTCGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAGCAAGTCCATCCAGACATTGGAATCTCCAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAGTCCTCGAAGTTGGCTCGTTACAACAAGAAGCCCACCATCACTTCCCGCGAGATTCAGACGGCTGTGAGGCTTGTTCTTCCCGGTGAGTTGGCCAAACACGCCGTTTCTGAAGGTACTAAGGCTGTGACCAAATTCACCAGTTCTTGATTCCTCTGTTATGTCAAATTTGGGGTTCCGAATTCTCTGTTGTTCGAGAATGTATTCTGCTATGAAATTTGTAAAATTAGATTAGTGACTTTGTTTGCTCGTCTTGTTGTCTTTTTCTTTGATGGTTAAGGTTTTGATTTGTTGTGAACAATTGAATATTAATACAAGTTCAAGCCTACCTCAAATTAATGTCAAACTTGTTCATTGTTAACTTTCATAATAGCTTGGTAGTGATTAAACTTAATCACTTGTAACGTCTAAAATCTCTTGTTTTTTGTGTGATTGCTTCTGTATTTTTTGAGGTTTTAAATGGAATGCGTATATGCATCTCATAGTCTATTCAATGCGTTGAAGAAAGGCTCGTCGTTTTGGTTGAATTGGGCTTATATACATTGAGCTGTTAATAAATTCCTTTTTCATAGTTCTTA

Coding sequence (CDS)

ATGGCACCGAAGGCCGAGAAGAAACCCGCCGAGAAGAAACCGGCGGAGGAGAAGAAGAGCGTAGCCGAAAAGGCTCCGGCGGAGAAGAAGCCGAAGGCCGGGAAGAAGCTGCCGAAGGAAGGAGGCGCCGCCGCCGGAGACAAGAAGAAGAAGAGGACGAAGAAGAGCGTCGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAGCAAGTCCATCCAGACATTGGAATCTCCAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAGTCCTCGAAGTTGGCTCGTTACAACAAGAAGCCCACCATCACTTCCCGCGAGATTCAGACGGCTGTGAGGCTTGTTCTTCCCGGTGAGTTGGCCAAACACGCCGTTTCTGAAGGTACTAAGGCTGTGACCAAATTCACCAGTTCTTGA

Protein sequence

MAPKAEKKPAEKKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

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BLAST of Sed0014621 vs. NCBI nr
Match: MBA0574626.1 (hypothetical protein [Gossypium lobatum] >MBA0700220.1 hypothetical protein [Gossypium aridum] >MBA0728808.1 hypothetical protein [Gossypium laxum] >MBA0817249.1 hypothetical protein [Gossypium harknessii] >MBA0873276.1 hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-65
Identity = 143/147 (97.28%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETY 60
           MAPKAEKKPAEKKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSIETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0014621 vs. NCBI nr
Match: XP_022755738.1 (histone H2B [Durio zibethinus] >KJB83793.1 hypothetical protein B456_013G264900 [Gossypium raimondii] >MBA0633369.1 hypothetical protein [Gossypium davidsonii] >MBA0669169.1 hypothetical protein [Gossypium klotzschianum] >MBA0752777.1 hypothetical protein [Gossypium gossypioides] >MBA0784334.1 hypothetical protein [Gossypium trilobum] >TYG39132.1 hypothetical protein ES288_D13G279900v1 [Gossypium darwinii] >TYH36664.1 hypothetical protein ES332_D13G279500v1 [Gossypium tomentosum])

HSP 1 Score: 258.8 bits (660), Expect = 2.8e-65
Identity = 143/147 (97.28%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETY 60
           MAPKAEKKPAEKKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKS ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSTETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0014621 vs. NCBI nr
Match: XP_012471398.1 (PREDICTED: histone H2B [Gossypium raimondii] >XP_016740575.2 histone H2B-like [Gossypium hirsutum] >XP_016755988.2 histone H2B [Gossypium hirsutum] >XP_017616583.1 PREDICTED: histone H2B [Gossypium arboreum] >O22582.3 RecName: Full=Histone H2B [Gossypium hirsutum] >KAB2038527.1 hypothetical protein ES319_D03G151500v1 [Gossypium barbadense] >KAG8496327.1 hypothetical protein CXB51_007475 [Gossypium anomalum] >MBA0552679.1 hypothetical protein [Gossypium lobatum] >MBA0609392.1 hypothetical protein [Gossypium davidsonii] >MBA0644419.1 hypothetical protein [Gossypium klotzschianum] >MBA0678673.1 hypothetical protein [Gossypium aridum] >MBA0707980.1 hypothetical protein [Gossypium laxum] >MBA0735702.1 hypothetical protein [Gossypium gossypioides] >MBA0761887.1 hypothetical protein [Gossypium trilobum] >MBA0794766.1 hypothetical protein [Gossypium harknessii] >MBA0825265.1 hypothetical protein [Gossypium armourianum] >MBA0851128.1 hypothetical protein [Gossypium schwendimanii] >TYG77039.1 hypothetical protein ES288_D03G163200v1 [Gossypium darwinii] >TYH80849.1 hypothetical protein ES332_D03G160500v1 [Gossypium tomentosum] >TYI90775.1 hypothetical protein E1A91_D03G145700v1 [Gossypium mustelinum])

HSP 1 Score: 258.5 bits (659), Expect = 3.6e-65
Identity = 143/147 (97.28%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETY 60
           MAPKAEKKPAEKKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKR KKSVETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0014621 vs. NCBI nr
Match: RVW66128.1 (Histone H2B [Vitis vinifera])

HSP 1 Score: 258.1 bits (658), Expect = 4.7e-65
Identity = 143/147 (97.28%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETY 60
           MAPKAEKKPAEKKPAEEKK+VAEKAPAEKKPKAGKKLPKE GAAAGDKKKKRTKKSVETY
Sbjct: 54  MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRTKKSVETY 113

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 114 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 173

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 174 VRLVLPGELAKHAVSEGTKAVTKFTSS 200

[Close]

BLAST of Sed0014621 vs. NCBI nr
Match: XP_034687943.1 (histone H2B-like [Vitis riparia])

HSP 1 Score: 258.1 bits (658), Expect = 4.7e-65
Identity = 143/147 (97.28%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETY 60
           MAPKAEKKPAEKKPAEEKK+VAEKAPAEKKPKAGKKLPKE GAAAGDKKKKRTKKSVETY
Sbjct: 148 MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRTKKSVETY 207

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 208 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 267

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 268 VRLVLPGELAKHAVSEGTKAVTKFTSS 294

[Close]

BLAST of Sed0014621 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 258.5 bits (659), Expect = 4.7e-68
Identity = 143/147 (97.28%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETY 60
           MAPKAEKKPAEKKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKR KKSVETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0014621 vs. ExPASy Swiss-Prot
Match: Q1S9I9 (Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 252.3 bits (643), Expect = 3.4e-66
Identity = 142/148 (95.95%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKS-VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVET 60
           MAPK EKKPAEKKPAEEKKS VAEKAPAEKKPKAGKKLPKEGG+AAG+KKKKR+KKSVET
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Sed0014621 vs. ExPASy Swiss-Prot
Match: Q1SWQ1 (Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 248.4 bits (633), Expect = 4.9e-65
Identity = 140/148 (94.59%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKS-VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVET 60
           MAPK EKKPAEKKPAEEKKS VAEKAPAEKKPKAGKKLPKEGG+AAG+KKKKR+KKSVET
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QESS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           AVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHDVSEGTKAVTKFTSS 148

[Close]

BLAST of Sed0014621 vs. ExPASy Swiss-Prot
Match: P40283 (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 238.0 bits (606), Expect = 6.6e-62
Identity = 139/151 (92.05%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK----KSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKS 60
           MAPKAEKKPAEKKPA EK    KS AEKAPAEKKPKAGKKLPKE G A GDKKKK  KKS
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAG-AGGDKKKKMKKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
           VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Sed0014621 vs. ExPASy Swiss-Prot
Match: Q9LZT0 (Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 237.7 bits (605), Expect = 8.6e-62
Identity = 138/147 (93.88%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETY 60
           MAPKAEKKPAEKKP EE KS AEKAPAEKKPKAGKKLPKE G A GDKKKK  KKSVETY
Sbjct: 1   MAPKAEKKPAEKKPVEE-KSKAEKAPAEKKPKAGKKLPKEAG-AGGDKKKKMKKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Sed0014621 vs. ExPASy TrEMBL
Match: A0A7J9MRA8 (Histone H2B OS=Gossypium schwendimanii OX=34291 GN=Goshw_000161 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.0e-66
Identity = 143/147 (97.28%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETY 60
           MAPKAEKKPAEKKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSIETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0014621 vs. ExPASy TrEMBL
Match: A0A7J8YLQ2 (Histone H2B OS=Gossypium aridum OX=34290 GN=Goari_001785 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.0e-66
Identity = 143/147 (97.28%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETY 60
           MAPKAEKKPAEKKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSIETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0014621 vs. ExPASy TrEMBL
Match: A0A7J8NCK1 (Histone H2B OS=Gossypium lobatum OX=34289 GN=Golob_001814 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.0e-66
Identity = 143/147 (97.28%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETY 60
           MAPKAEKKPAEKKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSIETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0014621 vs. ExPASy TrEMBL
Match: A0A7J9AXJ4 (Histone H2B OS=Gossypium laxum OX=34288 GN=Golax_001677 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.0e-66
Identity = 143/147 (97.28%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETY 60
           MAPKAEKKPAEKKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSIETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0014621 vs. ExPASy TrEMBL
Match: A0A7J9I556 (Histone H2B OS=Gossypium harknessii OX=34285 GN=Gohar_001832 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.0e-66
Identity = 143/147 (97.28%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETY 60
           MAPKAEKKPAEKKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSIETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0014621 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 238.0 bits (606), Expect = 4.7e-63
Identity = 139/151 (92.05%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK----KSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKS 60
           MAPKAEKKPAEKKPA EK    KS AEKAPAEKKPKAGKKLPKE G A GDKKKK  KKS
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAG-AGGDKKKKMKKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
           VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Sed0014621 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 237.7 bits (605), Expect = 6.1e-63
Identity = 138/147 (93.88%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETY 60
           MAPKAEKKPAEKKP EE KS AEKAPAEKKPKAGKKLPKE G A GDKKKK  KKSVETY
Sbjct: 1   MAPKAEKKPAEKKPVEE-KSKAEKAPAEKKPKAGKKLPKEAG-AGGDKKKKMKKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Sed0014621 vs. TAIR 10
Match: AT3G45980.1 (Histone superfamily protein )

HSP 1 Score: 235.7 bits (600), Expect = 2.3e-62
Identity = 138/151 (91.39%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK----KSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKS 60
           MAP+AEKKPAEKKPA EK    KS AEKAPAEKKPKAGKKLPKE G A GDKKKK  KKS
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAG-AGGDKKKKMKKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
           VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Sed0014621 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 230.7 bits (587), Expect = 7.5e-61
Identity = 133/151 (88.08%), Postives = 137/151 (90.73%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAE----EKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKS 60
           MAPKA KKPAEKKPAE    E++ VAEKAPAEKKPKAGKKLPKE      +KKKKR KKS
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Sed0014621 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 225.7 bits (574), Expect = 2.4e-59
Identity = 134/152 (88.16%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MAPKAEKKPAEKK-----PAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAP+AEKKPAEKK     P EE K+ AEKAPAEKKPKAGKKLP +    AGDKKKKR+KK
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKA-AEKAPAEKKPKAGKKLPPK---EAGDKKKKRSKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

The following BLAST results are available for this feature:

BLAST of Sed0014621 vs. NCBI nr


Match Name	E-value	Identity	Description
MBA0574626.1	1.2e-65	97.28	hypothetical protein [Gossypium lobatum] >MBA0700220.1 hypothetical protein [Gos...	[more]
XP_022755738.1	2.8e-65	97.28	histone H2B [Durio zibethinus] >KJB83793.1 hypothetical protein B456_013G264900 ...	[more]
XP_012471398.1	3.6e-65	97.28	PREDICTED: histone H2B [Gossypium raimondii] >XP_016740575.2 histone H2B-like [G...	[more]
RVW66128.1	4.7e-65	97.28	Histone H2B [Vitis vinifera]	[more]
XP_034687943.1	4.7e-65	97.28	histone H2B-like [Vitis riparia]	[more]

BLAST of Sed0014621 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22582	4.7e-68	97.28	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
Q1S9I9	3.4e-66	95.95	Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
Q1SWQ1	4.9e-65	94.59	Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
P40283	6.6e-62	92.05	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]
Q9LZT0	8.6e-62	93.88	Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3	[more]

BLAST of Sed0014621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J9MRA8	6.0e-66	97.28	Histone H2B OS=Gossypium schwendimanii OX=34291 GN=Goshw_000161 PE=3 SV=1	[more]
A0A7J8YLQ2	6.0e-66	97.28	Histone H2B OS=Gossypium aridum OX=34290 GN=Goari_001785 PE=3 SV=1	[more]
A0A7J8NCK1	6.0e-66	97.28	Histone H2B OS=Gossypium lobatum OX=34289 GN=Golob_001814 PE=3 SV=1	[more]
A0A7J9AXJ4	6.0e-66	97.28	Histone H2B OS=Gossypium laxum OX=34288 GN=Golax_001677 PE=3 SV=1	[more]
A0A7J9I556	6.0e-66	97.28	Histone H2B OS=Gossypium harknessii OX=34285 GN=Gohar_001832 PE=3 SV=1	[more]

BLAST of Sed0014621 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59910.1	4.7e-63	92.05	Histone superfamily protein	[more]
AT3G46030.1	6.1e-63	93.88	Histone superfamily protein	[more]
AT3G45980.1	2.3e-62	91.39	Histone superfamily protein	[more]
AT2G28720.1	7.5e-61	88.08	Histone superfamily protein	[more]
AT1G07790.1	2.4e-59	88.16	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 60..78 score: 80.55 coord: 131..144 score: 92.65 coord: 118..131 score: 92.45 coord: 101..118 score: 76.51 coord: 79..99 score: 75.74
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 50..146 e-value: 4.0E-73 score: 258.9
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 5..147
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 115..137
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 4..123 e-value: 2.9E-23 score: 82.7
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 19..147 e-value: 2.6E-60 score: 203.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 31..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	PANTHER	PTHR23428:SF282	HISTONE H2B	coord: 5..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014621.1	Sed0014621.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity