Sed0014352 (gene) Chayote v1

Overview
NameSed0014352
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPentatricopeptide repeat-containing protein
LocationLG11: 19217786 .. 19220725 (-)
RNA-Seq ExpressionSed0014352
SyntenySed0014352
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCAGGCTTTCATTCTCTCCCAGACCCAGACCCTTACCCCCTTAACCTACAATACTCGATCCACTAAGATTGATCTTCCAAGAGATTGAGATTGGAGATCCCAACCGGGCTTTGTATTTCTTGTCCATGGTACAGGCCAGTGATTTGAACCCTAAAACTTTTACTTTTGTTGCTATAATTTCTGCATTGGGAAATTATGGGCGGACAGAGGAAACGGAGGCCATCTTTGAGGAAATGAAAGAAGGTGGGTTGAGACCAAGAATTAAGGCTTTCAATGCTCTTCTTAAAGGTTATGTTAAAAAGGGTTCTCTTAAAGAAGTTGAATCTATTGTCTTAGAGATGGAGAAGAGCAGATTATCCCCCGATGAGCACACCTACGGTCTTCTCATTGATTCTTATGCGGATGTGGGCAGATGGGAAAGTGCAAGAACTTTGTTGAAAGAAATGGAAGTGCAGAGCGTACGGCCCAACACCTTCATTTTCAGTAGAATTTTAGCTAGTTATCGTGACCGGGGGTAATGGCAGAGGACATTCGAAGTCTTGAGGGAAATGAAGAGCAGCAATGTCAAGCCCGATAGGCATTTTTACAATGTCATGATTGATACTTTCGATAAATTCAATTGTCTCGATCATGCCATGGAAACATATGACTCAATGCTCTCTGAGGGGATTGAACCGGACGTTGTCACTTGGAACACACTTATAGATTGTCATTGTAAGCATGGATACCATGAAAGAGCTGCTGAGTTGTTTGATGAAATTAAGGAGCGCGGTTATTTACCTTGTTCCACAATATATAAGTTATTTATTGTTGTAACATATTGCCATGTAGGAATAAGTTATATGTTCATACTTTTTTCTTCATTGCTGGTATTGTCTTACAAATGGATGGAAAAATTTGGGATGCACTAAGGTTCTGGAATATTATGAGATGCTTGTTAGACTTGGTTGTTTTGCTTTCCGTTCGTGCTTTACATCTTGGTAAACAGATTATCTAGCTACATTGAATTGATAATCAGAAATTTTTAGTAAATATCATAGTCAAACTATAACTCTTAATTGGGCAAGCTTTTTGAAAATCATGGAATTTCTACATCAATGAAATTGTTTCTAAAATATATGACTTGTGTTTTTAAAAAATAGAATTGTATGTGCTTGTTCAATTAACTCGGCATGTGTGCTACTTACTTTTTACTTTAGTAATTTTGTAAGGTCGACTTCTTTTCTTCTGTTTCTTTAGTTGGTTGTAGTATTTGGATTAGAAACAAGTTTACCATCGAATTTGAAGTCTACGGTTATGTGTAATACTTTTATATGAATAAGCTCATCTGTAATTGTGCCATGGCCAGATCCGCATCATTATTGCTTGTTGTATTTATAAATTTATTTATCCAAATCTAAATTTTAATTTGTTTCTTGAAAATGCATTTAGTGTTCTATTTTATCATTTGACAGGGATTGTCAGAGCAGGCTGTGAATGCATATAGAGTCATGAGATTAGATGGATTAAAGCCCAGTCTCTTTGCTAGATTCATTGATCAATGCATTTGGTGAAAATAGGAGAGACATTAAAGCCTTTGCAGTCTTGCAGTACATGAAGGAAAATGTAAGTGCAGTGTATTTACAATTAACGTTTACATACTTCCATTCTTGATATCAATAATAAAGCTTCTCCATTCATCATGCAAAACTTATTTGGTCCTACAACTGCAGGATGTGAAGCCCGATGTTGTCACATATACGACGCTCATGAAAGCGCTGATTCGTGTCGATAAATTCAACAAGGTAGTTCAAATCGCTGCCTTAAGAACCCTCCATAGCATTAGTCATTATATCTCGTCTTCTACAATTTTCCCATGGTTTTTTAGGGAAATGTTGTCGACCTTAAATGTTAACAAAAAGCTGGACTATGTTTGTGTAACAACCCAGGTTTTCCTTCCGGTTCTATAGGTACGTTCAGTTGATTTTCAGTAGTTGTTTGGGCTGTTAGAGCTTCCAGGGGCATTTTGGTTATTTTGCCTCCCAGCCCGGTTTTATAATTAACCAGGGTTTCAGGGCTGTTGCTATGATTTGTTGACTTCAATTATCCTTCGGTTTCAGGTTCCCACAGTTAGAAGGCATTTTTGAGAAGTTTGGAGGCTTTCCGGTTAAAAGAGAAAAATAAGATTAGTTGTGTTGGAGCTAGGATTCGAACCATGGTGGTTTGGAAGTTGGTTTTGAGCCAAATGAAGAGAAAATAAAATAGATTTTAAAAGTGCTCTTGGTGGGATTTTTGGAGGCATTTTAATATTATAAAAAAAATAGGAAAATCAAAATAGGGTTTTGTCTCTCTCCTTCCCTCTCTTGGCTGATCCCCACACTCTCTCCTTTTCCCTTCCTTGGTCAAATCTCAAACCTCCATTGCCAAGCTTTCAATCTCTCCTCCATAGCTCATCCTCTCCATCTTGCTCCAAGGTAAGTCTTTGCAAACTCTTTCTTTTCTTCTTCTCTTTGCCATGGCCGAACCTAGAGCTAACCAAGGGAAGTTGTTCTTCTCTTCTCCATGGTAGATCCGAGAGCTCTCTCCTCTTGGGCTCAAGATCTCTCCTTGTTGCTTGCATCCAAAAGCTCTTGCTCTTCTCTTTGTTGGTGGAATCCGAGCTCACCCTTCCCCTTCCAACCTCCATTGCCGAGAGCCCTTGGGTAAGTTGTGGTGTTCTTGCTTTGGTTAGTTGTTGATTGTGTAGATCTAACATGGTTCTTCATTTTTGTGCAAAATAAGCCCTAGCCAAATCTCCCTTGCTTGTGCTTCCACCTTGACCGAGACCACCTTGAATCCTTGGAGTCCTTGCCAAATCATCAAAGTGAGCTTGTTGTGCTTGTCGTGTTGACTTGTTTGTGGTGTTGGTTTGGTCGAGAGCTACTTAGTAGCAAGACTGATGTTGCTTCCCTTTGGCCGAG

mRNA sequence

ACCAGGCTTTCATTCTCTCCCAGACCCAGACCCTTACCCCCTTAACCTACAATACTCGATCCACTAAGATTGATCTTCCAAGAGATTGAGATTGGAGATCCCAACCGGGCTTTGTATTTCTTGTCCATGGTACAGGCCAGTGATTTGAACCCTAAAACTTTTACTTTTGTTGCTATAATTTCTGCATTGGGAAATTATGGGCGGACAGAGGAAACGGAGGCCATCTTTGAGGAAATGAAAGAAGGTGGGTTGAGACCAAGAATTAAGGCTTTCAATGCTCTTCTTAAAGGTTATGTTAAAAAGGGTTCTCTTAAAGAAGTTGAATCTATTGTCTTAGAGATGGAGAAGAGCAGATTATCCCCCGATGAGCACACCTACGGTCTTCTCATTGATTCTTATGCGGATGTGGGCAGATGGGAAAGTGCAAGAACTTTGTTGAAAGAAATGGAAGTGCAGAGCGTACGGCCCAACACCTTCATTTTCAGTAGAATTTTAGCTAGTTATCGTGACCGGGGGTAATGGCAGAGGACATTCGAAGTCTTGAGGGAAATGAAGAGCAGCAATGTCAAGCCCGATAGGCATTTTTACAATGTCATGATTGATACTTTCGATAAATTCAATTGTCTCGATCATGCCATGGAAACATATGACTCAATGCTCTCTGAGGGGATTGAACCGGACGTTGTCACTTGGAACACACTTATAGATTGTCATTGGATTGTCAGAGCAGGCTGTGAATGCATATAGAGTCATGAGATTAGATGGATTAAAGCCCAGTCTCTTTGCTAGATTCATTGATCAATGCATTTGGTGAAAATAGGAGAGACATTAAAGCCTTTGCAGTCTTGCAGTACATGAAGGAAAATGATGTGAAGCCCGATGTTGTCACATATACGACGCTCATGAAAGCGCTGATTCGTGTCGATAAATTCAACAAGGGAAATGTTGTCGACCTTAAATGTTAACAAAAAGCTGGACTATGTTTGTGTAACAACCCAGGTTTTCCTTCCGGTTCTATAGGTTCCCACAGTTAGAAGGCATTTTTGAGAAGTTTGGAGGCTTTCCGGTTAAAAGAGAAAAATAAGATTAGTTGTGTTGGAGCTAGGATTCGAACCATGGTGGTTTGGAAGTTGGTTTTGAGCCAAATGAAGAGAAAATAAAATAGATTTTAAAAGTGCTCTTGGTGGGATTTTTGGAGGCATTTTAATATTATAAAAAAAATAGGAAAATCAAAATAGGGTTTTGTCTCTCTCCTTCCCTCTCTTGGCTGATCCCCACACTCTCTCCTTTTCCCTTCCTTGGTCAAATCTCAAACCTCCATTGCCAAGCTTTCAATCTCTCCTCCATAGCTCATCCTCTCCATCTTGCTCCAAGGTAAGTCTTTGCAAACTCTTTCTTTTCTTCTTCTCTTTGCCATGGCCGAACCTAGAGCTAACCAAGGGAAGTTGTTCTTCTCTTCTCCATGGTAGATCCGAGAGCTCTCTCCTCTTGGGCTCAAGATCTCTCCTTGTTGCTTGCATCCAAAAGCTCTTGCTCTTCTCTTTGTTGGTGGAATCCGAGCTCACCCTTCCCCTTCCAACCTCCATTGCCGAGAGCCCTTGGGTAAGTTGTGGTGTTCTTGCTTTGGTTAGTTGTTGATTGTGTAGATCTAACATGGTTCTTCATTTTTGTGCAAAATAAGCCCTAGCCAAATCTCCCTTGCTTGTGCTTCCACCTTGACCGAGACCACCTTGAATCCTTGGAGTCCTTGCCAAATCATCAAAGTGAGCTTGTTGTGCTTGTCGTGTTGACTTGTTTGTGGTGTTGGTTTGGTCGAGAGCTACTTAGTAGCAAGACTGATGTTGCTTCCCTTTGGCCGAG

Coding sequence (CDS)

ATGGTACAGGCCAGTGATTTGAACCCTAAAACTTTTACTTTTGTTGCTATAATTTCTGCATTGGGAAATTATGGGCGGACAGAGGAAACGGAGGCCATCTTTGAGGAAATGAAAGAAGGTGGGTTGAGACCAAGAATTAAGGCTTTCAATGCTCTTCTTAAAGGTTATGTTAAAAAGGGTTCTCTTAAAGAAGTTGAATCTATTGTCTTAGAGATGGAGAAGAGCAGATTATCCCCCGATGAGCACACCTACGGTCTTCTCATTGATTCTTATGCGGATGTGGGCAGATGGGAAAGTGCAAGAACTTTGTTGAAAGAAATGGAAGTGCAGAGCGTACGGCCCAACACCTTCATTTTCAGTAGAATTTTAGCTAGTTATCGTGACCGGGGGTAA

Protein sequence

MVQASDLNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKGSLKEVESIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFSRILASYRDRG
Homology
[Close]
BLAST of Sed0014352 vs. NCBI nr
Match: XP_022153135.1 (pentatricopeptide repeat-containing protein At5g42310, mitochondrial isoform X2 [Momordica charantia])

HSP 1 Score: 228.0 bits (580), Expect = 4.6e-56
Identity = 114/130 (87.69%), Postives = 121/130 (93.08%), Query Frame = 0 

Query: 1   MVQASDLNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKG 60
           MVQAS LNPKT TFVAIISALGNYGRTEE EAIFEEMKEGGLRPRIKAFNALLKGYVK+G
Sbjct: 295 MVQASGLNPKTSTFVAIISALGNYGRTEEAEAIFEEMKEGGLRPRIKAFNALLKGYVKRG 354

Query: 61  SLKEVESIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFS 120
           SLKE ESIV EMEKS LSPDEHTYGLLID+YA+VGRWESAR LLKEME + V+PN+FIFS
Sbjct: 355 SLKEAESIVSEMEKSGLSPDEHTYGLLIDAYANVGRWESARNLLKEMEARDVKPNSFIFS 414

Query: 121 RILASYRDRG 131
           R+LASYRDRG
Sbjct: 415 RVLASYRDRG 424

[Close]
BLAST of Sed0014352 vs. NCBI nr
Match: XP_022153134.1 (pentatricopeptide repeat-containing protein At5g42310, mitochondrial isoform X1 [Momordica charantia])

HSP 1 Score: 228.0 bits (580), Expect = 4.6e-56
Identity = 114/130 (87.69%), Postives = 121/130 (93.08%), Query Frame = 0 

Query: 1   MVQASDLNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKG 60
           MVQAS LNPKT TFVAIISALGNYGRTEE EAIFEEMKEGGLRPRIKAFNALLKGYVK+G
Sbjct: 295 MVQASGLNPKTSTFVAIISALGNYGRTEEAEAIFEEMKEGGLRPRIKAFNALLKGYVKRG 354

Query: 61  SLKEVESIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFS 120
           SLKE ESIV EMEKS LSPDEHTYGLLID+YA+VGRWESAR LLKEME + V+PN+FIFS
Sbjct: 355 SLKEAESIVSEMEKSGLSPDEHTYGLLIDAYANVGRWESARNLLKEMEARDVKPNSFIFS 414

Query: 121 RILASYRDRG 131
           R+LASYRDRG
Sbjct: 415 RVLASYRDRG 424

[Close]
BLAST of Sed0014352 vs. NCBI nr
Match: KAG7030042.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-54
Identity = 111/130 (85.38%), Postives = 120/130 (92.31%), Query Frame = 0 

Query: 1   MVQASDLNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKG 60
           MVQAS LNPKT TFVAIISALGNYGRTEE EAIFEEMKEGGL+PRIKAFNALLKGY KKG
Sbjct: 334 MVQASGLNPKTSTFVAIISALGNYGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYAKKG 393

Query: 61  SLKEVESIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFS 120
           SLKE ESIV EMEKS LSPDEHTYGLL+D+YA+VG W+SAR LLK+ME ++V+PNTFIFS
Sbjct: 394 SLKEAESIVSEMEKSGLSPDEHTYGLLVDAYANVGSWQSARQLLKQMEARNVQPNTFIFS 453

Query: 121 RILASYRDRG 131
           RILASYRDRG
Sbjct: 454 RILASYRDRG 463

[Close]
BLAST of Sed0014352 vs. NCBI nr
Match: XP_022999638.1 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic [Cucurbita maxima])

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-54
Identity = 111/130 (85.38%), Postives = 120/130 (92.31%), Query Frame = 0 

Query: 1   MVQASDLNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKG 60
           MVQAS LNPKT TFVAIISALGNYGRTEE EAIFEEMKEGGL+PRIKAFNALLKGY KKG
Sbjct: 305 MVQASGLNPKTSTFVAIISALGNYGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYAKKG 364

Query: 61  SLKEVESIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFS 120
           SLKE ESIV EMEKS LSPDEHTYGLL+D+YA+VG W+SAR LLK+ME ++V+PNTFIFS
Sbjct: 365 SLKEAESIVSEMEKSGLSPDEHTYGLLVDAYANVGSWQSARQLLKQMEARNVQPNTFIFS 424

Query: 121 RILASYRDRG 131
           RILASYRDRG
Sbjct: 425 RILASYRDRG 434

[Close]
BLAST of Sed0014352 vs. NCBI nr
Match: XP_022946456.1 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic [Cucurbita moschata])

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-54
Identity = 111/130 (85.38%), Postives = 120/130 (92.31%), Query Frame = 0 

Query: 1   MVQASDLNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKG 60
           MVQAS LNPKT TFVAIISALGNYGRTEE EAIFEEMKEGGL+PRIKAFNALLKGY KKG
Sbjct: 305 MVQASGLNPKTSTFVAIISALGNYGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYAKKG 364

Query: 61  SLKEVESIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFS 120
           SLKE ESIV EMEKS LSPDEHTYGLL+D+YA+VG W+SAR LLK+ME ++V+PNTFIFS
Sbjct: 365 SLKEAESIVSEMEKSGLSPDEHTYGLLVDAYANVGSWQSARQLLKQMEARNVQPNTFIFS 424

Query: 121 RILASYRDRG 131
           RILASYRDRG
Sbjct: 425 RILASYRDRG 434

[Close]
BLAST of Sed0014352 vs. ExPASy Swiss-Prot
Match: Q8L844 (Pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRP1 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.0e-42
Identity = 82/130 (63.08%), Postives = 105/130 (80.77%), Query Frame = 0 

Query: 1   MVQASDLNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKG 60
           M QA+ L+ KT T V+IISAL + GRT E EA+FEE+++ G++PR +A+NALLKGYVK G
Sbjct: 294 MAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTG 353

Query: 61  SLKEVESIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFS 120
            LK+ ES+V EMEK  +SPDEHTY LLID+Y + GRWESAR +LKEME   V+PN+F+FS
Sbjct: 354 PLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFS 413

Query: 121 RILASYRDRG 131
           R+LA +RDRG
Sbjct: 414 RLLAGFRDRG 423

[Close]
BLAST of Sed0014352 vs. ExPASy Swiss-Prot
Match: A0A1D6IEG9 (Pentatricopeptide repeat-containing protein CRP1, chloroplastic OS=Zea mays OX=4577 GN=CRP1 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.7e-32
Identity = 69/129 (53.49%), Postives = 91/129 (70.54%), Query Frame = 0 

Query: 3   QASDLNPKTFTFVAIISALGNYGRTEETEAIF-EEMKEGGLRPRIKAFNALLKGYVKKGS 62
           QA  L P++    A+ISALG  GR  E EA+F E    G ++PR +A+NALLKGYV+  S
Sbjct: 255 QAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIAS 314

Query: 63  LKEVESIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFSR 122
           LK  E ++ EM +  ++PDE TY LL+D+Y   GRWESAR LLKEME   V+P++++FSR
Sbjct: 315 LKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSR 374

Query: 123 ILASYRDRG 131
           ILA +RDRG
Sbjct: 375 ILAGFRDRG 383

[Close]
BLAST of Sed0014352 vs. ExPASy Swiss-Prot
Match: Q84ZD2 (Pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0548300 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.8e-32
Identity = 69/129 (53.49%), Postives = 92/129 (71.32%), Query Frame = 0 

Query: 3   QASDLNPKTFTFVAIISALGNYGRTEETEAIF-EEMKEGGLRPRIKAFNALLKGYVKKGS 62
           QA  L P++    A+IS+LG+  R  E EA+F E    G ++PR +A+NALLKGYVK GS
Sbjct: 248 QAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGS 307

Query: 63  LKEVESIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFSR 122
           LK  E ++ EM +  ++PDE TY LL+D+Y   GRWESAR LLKEME   V+P++++FSR
Sbjct: 308 LKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSR 367

Query: 123 ILASYRDRG 131
           ILA +RDRG
Sbjct: 368 ILAGFRDRG 376

[Close]
BLAST of Sed0014352 vs. ExPASy Swiss-Prot
Match: Q9LYT2 (Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana OX=3702 GN=At3g59040 PE=2 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-14
Identity = 36/125 (28.80%), Postives = 65/125 (52.00%), Query Frame = 0 

Query: 2   VQASDLNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKGS 61
           +Q SD+ P   ++  +I A G   R EE  ++FEEM + G+RP  KA+N LL  +   G 
Sbjct: 305 MQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGM 364

Query: 62  LKEVESIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFSR 121
           +++ +++   M + R+ PD  +Y  ++ +Y +    E A    K ++V    PN   +  
Sbjct: 365 VEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGT 424

Query: 122 ILASY 127
           ++  Y
Sbjct: 425 LIKGY 429

[Close]
BLAST of Sed0014352 vs. ExPASy Swiss-Prot
Match: Q940A6 (Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g19440 PE=2 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-14
Identity = 38/124 (30.65%), Postives = 67/124 (54.03%), Query Frame = 0 

Query: 7   LNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKGSLKEVE 66
           ++P + T+ ++I  +    R EE + +FEEM+  GL P +  + AL+ GY K G + +VE
Sbjct: 689 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVE 748

Query: 67  SIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFSRILASY 126
            ++ EM    + P++ TY ++I  YA  G    A  LL EM  + + P++  +   +  Y
Sbjct: 749 CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGY 808

Query: 127 RDRG 131
             +G
Sbjct: 809 LKQG 812

[Close]
BLAST of Sed0014352 vs. ExPASy TrEMBL
Match: A0A6J1DFY0 (pentatricopeptide repeat-containing protein At5g42310, mitochondrial isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020703 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.2e-56
Identity = 114/130 (87.69%), Postives = 121/130 (93.08%), Query Frame = 0 

Query: 1   MVQASDLNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKG 60
           MVQAS LNPKT TFVAIISALGNYGRTEE EAIFEEMKEGGLRPRIKAFNALLKGYVK+G
Sbjct: 295 MVQASGLNPKTSTFVAIISALGNYGRTEEAEAIFEEMKEGGLRPRIKAFNALLKGYVKRG 354

Query: 61  SLKEVESIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFS 120
           SLKE ESIV EMEKS LSPDEHTYGLLID+YA+VGRWESAR LLKEME + V+PN+FIFS
Sbjct: 355 SLKEAESIVSEMEKSGLSPDEHTYGLLIDAYANVGRWESARNLLKEMEARDVKPNSFIFS 414

Query: 121 RILASYRDRG 131
           R+LASYRDRG
Sbjct: 415 RVLASYRDRG 424

[Close]
BLAST of Sed0014352 vs. ExPASy TrEMBL
Match: A0A6J1DI55 (pentatricopeptide repeat-containing protein At5g42310, mitochondrial isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020703 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.2e-56
Identity = 114/130 (87.69%), Postives = 121/130 (93.08%), Query Frame = 0 

Query: 1   MVQASDLNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKG 60
           MVQAS LNPKT TFVAIISALGNYGRTEE EAIFEEMKEGGLRPRIKAFNALLKGYVK+G
Sbjct: 295 MVQASGLNPKTSTFVAIISALGNYGRTEEAEAIFEEMKEGGLRPRIKAFNALLKGYVKRG 354

Query: 61  SLKEVESIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFS 120
           SLKE ESIV EMEKS LSPDEHTYGLLID+YA+VGRWESAR LLKEME + V+PN+FIFS
Sbjct: 355 SLKEAESIVSEMEKSGLSPDEHTYGLLIDAYANVGRWESARNLLKEMEARDVKPNSFIFS 414

Query: 121 RILASYRDRG 131
           R+LASYRDRG
Sbjct: 415 RVLASYRDRG 424

[Close]
BLAST of Sed0014352 vs. ExPASy TrEMBL
Match: A0A6J1KKB7 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493938 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.2e-55
Identity = 111/130 (85.38%), Postives = 120/130 (92.31%), Query Frame = 0 

Query: 1   MVQASDLNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKG 60
           MVQAS LNPKT TFVAIISALGNYGRTEE EAIFEEMKEGGL+PRIKAFNALLKGY KKG
Sbjct: 305 MVQASGLNPKTSTFVAIISALGNYGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYAKKG 364

Query: 61  SLKEVESIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFS 120
           SLKE ESIV EMEKS LSPDEHTYGLL+D+YA+VG W+SAR LLK+ME ++V+PNTFIFS
Sbjct: 365 SLKEAESIVSEMEKSGLSPDEHTYGLLVDAYANVGSWQSARQLLKQMEARNVQPNTFIFS 424

Query: 121 RILASYRDRG 131
           RILASYRDRG
Sbjct: 425 RILASYRDRG 434

[Close]
BLAST of Sed0014352 vs. ExPASy TrEMBL
Match: A0A6J1G3R4 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111450509 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.2e-55
Identity = 111/130 (85.38%), Postives = 120/130 (92.31%), Query Frame = 0 

Query: 1   MVQASDLNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKG 60
           MVQAS LNPKT TFVAIISALGNYGRTEE EAIFEEMKEGGL+PRIKAFNALLKGY KKG
Sbjct: 305 MVQASGLNPKTSTFVAIISALGNYGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYAKKG 364

Query: 61  SLKEVESIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFS 120
           SLKE ESIV EMEKS LSPDEHTYGLL+D+YA+VG W+SAR LLK+ME ++V+PNTFIFS
Sbjct: 365 SLKEAESIVSEMEKSGLSPDEHTYGLLVDAYANVGSWQSARQLLKQMEARNVQPNTFIFS 424

Query: 121 RILASYRDRG 131
           RILASYRDRG
Sbjct: 425 RILASYRDRG 434

[Close]
BLAST of Sed0014352 vs. ExPASy TrEMBL
Match: A0A5A7T6H7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold119G00250 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 9.4e-55
Identity = 110/130 (84.62%), Postives = 121/130 (93.08%), Query Frame = 0 

Query: 1   MVQASDLNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKG 60
           MVQAS LNPKT TFVA+ISALGN+GRTEE EAIFEEMKEGGL+PRIKAFNALLKGY +KG
Sbjct: 305 MVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKG 364

Query: 61  SLKEVESIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFS 120
           SLKE ESIV EMEKS LSPDEHTYGLL+D+YA+VGRWESAR LLK+ME ++V+PNTFIFS
Sbjct: 365 SLKEAESIVSEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFS 424

Query: 121 RILASYRDRG 131
           RILASYRDRG
Sbjct: 425 RILASYRDRG 434

[Close]
BLAST of Sed0014352 vs. TAIR 10
Match: AT5G42310.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 172.6 bits (436), Expect = 2.1e-43
Identity = 82/130 (63.08%), Postives = 105/130 (80.77%), Query Frame = 0 

Query: 1   MVQASDLNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKG 60
           M QA+ L+ KT T V+IISAL + GRT E EA+FEE+++ G++PR +A+NALLKGYVK G
Sbjct: 294 MAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTG 353

Query: 61  SLKEVESIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFS 120
            LK+ ES+V EMEK  +SPDEHTY LLID+Y + GRWESAR +LKEME   V+PN+F+FS
Sbjct: 354 PLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFS 413

Query: 121 RILASYRDRG 131
           R+LA +RDRG
Sbjct: 414 RLLAGFRDRG 423

[Close]
BLAST of Sed0014352 vs. TAIR 10
Match: AT3G59040.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 80.9 bits (198), Expect = 8.5e-16
Identity = 36/125 (28.80%), Postives = 65/125 (52.00%), Query Frame = 0 

Query: 2   VQASDLNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKGS 61
           +Q SD+ P   ++  +I A G   R EE  ++FEEM + G+RP  KA+N LL  +   G 
Sbjct: 312 MQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGM 371

Query: 62  LKEVESIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFSR 121
           +++ +++   M + R+ PD  +Y  ++ +Y +    E A    K ++V    PN   +  
Sbjct: 372 VEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGT 431

Query: 122 ILASY 127
           ++  Y
Sbjct: 432 LIKGY 436

[Close]
BLAST of Sed0014352 vs. TAIR 10
Match: AT3G59040.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 80.9 bits (198), Expect = 8.5e-16
Identity = 36/125 (28.80%), Postives = 65/125 (52.00%), Query Frame = 0 

Query: 2   VQASDLNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKGS 61
           +Q SD+ P   ++  +I A G   R EE  ++FEEM + G+RP  KA+N LL  +   G 
Sbjct: 305 MQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGM 364

Query: 62  LKEVESIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFSR 121
           +++ +++   M + R+ PD  +Y  ++ +Y +    E A    K ++V    PN   +  
Sbjct: 365 VEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGT 424

Query: 122 ILASY 127
           ++  Y
Sbjct: 425 LIKGY 429

[Close]
BLAST of Sed0014352 vs. TAIR 10
Match: AT4G19440.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-15
Identity = 38/124 (30.65%), Postives = 67/124 (54.03%), Query Frame = 0 

Query: 7   LNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKGSLKEVE 66
           ++P + T+ ++I  +    R EE + +FEEM+  GL P +  + AL+ GY K G + +VE
Sbjct: 676 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVE 735

Query: 67  SIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFSRILASY 126
            ++ EM    + P++ TY ++I  YA  G    A  LL EM  + + P++  +   +  Y
Sbjct: 736 CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGY 795

Query: 127 RDRG 131
             +G
Sbjct: 796 LKQG 799

[Close]
BLAST of Sed0014352 vs. TAIR 10
Match: AT4G19440.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-15
Identity = 38/124 (30.65%), Postives = 67/124 (54.03%), Query Frame = 0 

Query: 7   LNPKTFTFVAIISALGNYGRTEETEAIFEEMKEGGLRPRIKAFNALLKGYVKKGSLKEVE 66
           ++P + T+ ++I  +    R EE + +FEEM+  GL P +  + AL+ GY K G + +VE
Sbjct: 676 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVE 735

Query: 67  SIVLEMEKSRLSPDEHTYGLLIDSYADVGRWESARTLLKEMEVQSVRPNTFIFSRILASY 126
            ++ EM    + P++ TY ++I  YA  G    A  LL EM  + + P++  +   +  Y
Sbjct: 736 CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGY 795

Query: 127 RDRG 131
             +G
Sbjct: 796 LKQG 799

The following BLAST results are available for this feature:
BLAST of Sed0014352 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022153135.14.6e-5687.69pentatricopeptide repeat-containing protein At5g42310, mitochondrial isoform X2 ... [more]
XP_022153134.14.6e-5687.69pentatricopeptide repeat-containing protein At5g42310, mitochondrial isoform X1 ... [more]
KAG7030042.11.5e-5485.38Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_022999638.11.5e-5485.38pentatricopeptide repeat-containing protein At5g42310, chloroplastic [Cucurbita ... [more]
XP_022946456.11.5e-5485.38pentatricopeptide repeat-containing protein At5g42310, chloroplastic [Cucurbita ... [more]
BLAST of Sed0014352 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L8443.0e-4263.08Pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Arabidop... [more]
A0A1D6IEG93.7e-3253.49Pentatricopeptide repeat-containing protein CRP1, chloroplastic OS=Zea mays OX=4... [more]
Q84ZD24.8e-3253.49Pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic OS=Oryza... [more]
Q9LYT21.2e-1428.80Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana OX... [more]
Q940A62.0e-1430.65Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidop... [more]
BLAST of Sed0014352 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DFY02.2e-5687.69pentatricopeptide repeat-containing protein At5g42310, mitochondrial isoform X2 ... [more]
A0A6J1DI552.2e-5687.69pentatricopeptide repeat-containing protein At5g42310, mitochondrial isoform X1 ... [more]
A0A6J1KKB77.2e-5585.38pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Cucurbit... [more]
A0A6J1G3R47.2e-5585.38pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Cucurbit... [more]
A0A5A7T6H79.4e-5584.62Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
BLAST of Sed0014352 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G42310.12.1e-4363.08Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT3G59040.28.5e-1628.80Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G59040.18.5e-1628.80Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G19440.11.4e-1530.65Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G19440.21.4e-1530.65Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 46..92
e-value: 2.0E-10
score: 40.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 82..116
e-value: 1.6E-7
score: 29.0
coord: 12..44
e-value: 1.3E-6
score: 26.2
coord: 48..81
e-value: 3.7E-7
score: 27.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 12..41
e-value: 1.4E-4
score: 21.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 80..114
score: 11.597113
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 10..44
score: 11.180584
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 45..79
score: 10.303679
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..130
e-value: 7.6E-32
score: 112.9
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 1..130
NoneNo IPR availablePANTHERPTHR47942:SF23PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN CRP1 HOMOLOG, CHLOROPLASTICcoord: 1..130

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0014352.1Sed0014352.1mRNA
Sed0014352.2Sed0014352.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010239 chloroplast mRNA processing
biological_process GO:0009658 chloroplast organization
cellular_component GO:0042644 chloroplast nucleoid
cellular_component GO:0042651 thylakoid membrane
molecular_function GO:0003729 mRNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003727 single-stranded RNA binding