Sed0014312 (gene) Chayote v1

Overview
NameSed0014312
Typegene
OrganismSechium edule (Chayote v1)
DescriptionStAR lipid transfer-like protein
LocationLG02: 52574432 .. 52574788 (+)
RNA-Seq ExpressionSed0014312
SyntenySed0014312
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCAGAGGAGGGAGGAAGCGGCGGCGGCGGCAATGGGCACTGGTGGTGGGCTTTGGCCGGCGCAACGCAGTTAGGTTGGGGTGTCGCCTCCTTCCGGCGAGGTGTGATCGGCGATTCGAGCATCATGCCCTTTAAGGCCTTCGCCGTTGCTTCGCTTTTTGTCGGCGCTGCTGCCTCGTCCGCCATCGCTTCCCTCAAGGCTTCGGGCATCCACAAGGTTGGCTTTACTTCTCCCCCTCGTTTTTGTTTTATTCTTCTAAATTGGGCATTCAATCAGGTGGAGGACGTGATGGAAGTAGGGGCTAATATCAGGAATGGATTGGGGATTCGTCCCAGGACACCAGATGAATGA

mRNA sequence

ATGGAGGCAGAGGAGGGAGGAAGCGGCGGCGGCGGCAATGGGCACTGGTGGTGGGCTTTGGCCGGCGCAACGCAGTTAGGTTGGGGTGTCGCCTCCTTCCGGCGAGGTGTGATCGGCGATTCGAGCATCATGCCCTTTAAGGCCTTCGCCGTTGCTTCGCTTTTTGTCGGCGCTGCTGCCTCGTCCGCCATCGCTTCCCTCAAGGCTTCGGGCATCCACAAGGTTGGCTTTACTTCTCCCCCTCGTTTTTGTTTTATTCTTCTAAATTGGGCATTCAATCAGGTGGAGGACGTGATGGAAGTAGGGGCTAATATCAGGAATGGATTGGGGATTCGTCCCAGGACACCAGATGAATGA

Coding sequence (CDS)

ATGGAGGCAGAGGAGGGAGGAAGCGGCGGCGGCGGCAATGGGCACTGGTGGTGGGCTTTGGCCGGCGCAACGCAGTTAGGTTGGGGTGTCGCCTCCTTCCGGCGAGGTGTGATCGGCGATTCGAGCATCATGCCCTTTAAGGCCTTCGCCGTTGCTTCGCTTTTTGTCGGCGCTGCTGCCTCGTCCGCCATCGCTTCCCTCAAGGCTTCGGGCATCCACAAGGTTGGCTTTACTTCTCCCCCTCGTTTTTGTTTTATTCTTCTAAATTGGGCATTCAATCAGGTGGAGGACGTGATGGAAGTAGGGGCTAATATCAGGAATGGATTGGGGATTCGTCCCAGGACACCAGATGAATGA

Protein sequence

MEAEEGGSGGGGNGHWWWALAGATQLGWGVASFRRGVIGDSSIMPFKAFAVASLFVGAAASSAIASLKASGIHKVGFTSPPRFCFILLNWAFNQVEDVMEVGANIRNGLGIRPRTPDE
Homology
BLAST of Sed0014312 vs. NCBI nr
Match: XP_022974845.1 (uncharacterized protein LOC111473617 isoform X1 [Cucurbita maxima] >XP_022975308.1 uncharacterized protein LOC111474468 isoform X1 [Cucurbita maxima])

HSP 1 Score: 159.1 bits (401), Expect = 2.4e-35
Identity = 86/115 (74.78%), Postives = 90/115 (78.26%), Query Frame = 0

Query: 4   EEGGSGGGGNGHWWWALAGATQLGWGVASFRRGVIGDSSIMPFKAFAVASLFVGAAASSA 63
           E GGS GG N HWWWALAGATQLGWG+ASFRRGVIGDSS+MPFKAFAVASLFVGAA+SSA
Sbjct: 30  ENGGSDGGSNAHWWWALAGATQLGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAASSSA 89

Query: 64  IASLKASGIHKVGFTSPPRFCFILLNWAFNQVEDVMEVGANIRNGLGIRPRTPDE 119
           IASLKA+GIHK                    VEDVMEVGANIRNGLGIRPRT DE
Sbjct: 90  IASLKAAGIHK--------------------VEDVMEVGANIRNGLGIRPRTRDE 124

BLAST of Sed0014312 vs. NCBI nr
Match: XP_022941577.1 (uncharacterized protein LOC111446882 isoform X2 [Cucurbita moschata] >KAG7028515.1 hypothetical protein SDJN02_09696, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.4 bits (394), Expect = 1.5e-34
Identity = 85/115 (73.91%), Postives = 88/115 (76.52%), Query Frame = 0

Query: 4   EEGGSGGGGNGHWWWALAGATQLGWGVASFRRGVIGDSSIMPFKAFAVASLFVGAAASSA 63
           E GGS GG N HWWWALAGATQ GWG+ASFRRGVIGDSS+MPFKAFAVASLFVGAAASSA
Sbjct: 30  ENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAASSA 89

Query: 64  IASLKASGIHKVGFTSPPRFCFILLNWAFNQVEDVMEVGANIRNGLGIRPRTPDE 119
           IASLKA+GIHK                    VEDVMEVGANIR GLGIRPRT DE
Sbjct: 90  IASLKAAGIHK--------------------VEDVMEVGANIRTGLGIRPRTRDE 124

BLAST of Sed0014312 vs. NCBI nr
Match: KAG6597040.1 (hypothetical protein SDJN03_10220, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156.4 bits (394), Expect = 1.5e-34
Identity = 85/115 (73.91%), Postives = 88/115 (76.52%), Query Frame = 0

Query: 4   EEGGSGGGGNGHWWWALAGATQLGWGVASFRRGVIGDSSIMPFKAFAVASLFVGAAASSA 63
           E GGS GG N HWWWALAGATQ GWG+ASFRRGVIGDSS+MPFKAFAVASLFVGAAASSA
Sbjct: 3   ENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAASSA 62

Query: 64  IASLKASGIHKVGFTSPPRFCFILLNWAFNQVEDVMEVGANIRNGLGIRPRTPDE 119
           IASLKA+GIHK                    VEDVMEVGANIR GLGIRPRT DE
Sbjct: 63  IASLKAAGIHK--------------------VEDVMEVGANIRTGLGIRPRTRDE 97

BLAST of Sed0014312 vs. NCBI nr
Match: XP_023540026.1 (uncharacterized protein LOC111800524 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.0 bits (393), Expect = 2.0e-34
Identity = 84/115 (73.04%), Postives = 88/115 (76.52%), Query Frame = 0

Query: 4   EEGGSGGGGNGHWWWALAGATQLGWGVASFRRGVIGDSSIMPFKAFAVASLFVGAAASSA 63
           E GGS GG N HWWWALAGATQ GWG+ASFRRGVIGDSS+MPFKAFAVASLFVGAAASSA
Sbjct: 8   ENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAASSA 67

Query: 64  IASLKASGIHKVGFTSPPRFCFILLNWAFNQVEDVMEVGANIRNGLGIRPRTPDE 119
           IASLKA+GIHK                    VEDVMEVGANIR GLG+RPRT DE
Sbjct: 68  IASLKAAGIHK--------------------VEDVMEVGANIRTGLGVRPRTRDE 102

BLAST of Sed0014312 vs. NCBI nr
Match: XP_022145350.1 (uncharacterized protein LOC111014824 [Momordica charantia])

HSP 1 Score: 146.4 bits (368), Expect = 1.6e-31
Identity = 78/115 (67.83%), Postives = 86/115 (74.78%), Query Frame = 0

Query: 4   EEGGSGGGGNGHWWWALAGATQLGWGVASFRRGVIGDSSIMPFKAFAVASLFVGAAASSA 63
           E+ G  GG N HWWWALAGATQ GWG+ASFRRG IG+SS+MPFKAFAVASLFVGAAASSA
Sbjct: 2   EDNGGDGGSNAHWWWALAGATQFGWGIASFRRGFIGNSSLMPFKAFAVASLFVGAAASSA 61

Query: 64  IASLKASGIHKVGFTSPPRFCFILLNWAFNQVEDVMEVGANIRNGLGIRPRTPDE 119
           IASLKASGIHK                    VEDVME+GA+IR+GLG+RPR  DE
Sbjct: 62  IASLKASGIHK--------------------VEDVMEIGASIRSGLGVRPRARDE 96

BLAST of Sed0014312 vs. ExPASy TrEMBL
Match: A0A6J1IIU1 (uncharacterized protein LOC111473617 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111474468 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.2e-35
Identity = 86/115 (74.78%), Postives = 90/115 (78.26%), Query Frame = 0

Query: 4   EEGGSGGGGNGHWWWALAGATQLGWGVASFRRGVIGDSSIMPFKAFAVASLFVGAAASSA 63
           E GGS GG N HWWWALAGATQLGWG+ASFRRGVIGDSS+MPFKAFAVASLFVGAA+SSA
Sbjct: 30  ENGGSDGGSNAHWWWALAGATQLGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAASSSA 89

Query: 64  IASLKASGIHKVGFTSPPRFCFILLNWAFNQVEDVMEVGANIRNGLGIRPRTPDE 119
           IASLKA+GIHK                    VEDVMEVGANIRNGLGIRPRT DE
Sbjct: 90  IASLKAAGIHK--------------------VEDVMEVGANIRNGLGIRPRTRDE 124

BLAST of Sed0014312 vs. ExPASy TrEMBL
Match: A0A6J1FMU0 (uncharacterized protein LOC111446882 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446882 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.5e-35
Identity = 85/115 (73.91%), Postives = 88/115 (76.52%), Query Frame = 0

Query: 4   EEGGSGGGGNGHWWWALAGATQLGWGVASFRRGVIGDSSIMPFKAFAVASLFVGAAASSA 63
           E GGS GG N HWWWALAGATQ GWG+ASFRRGVIGDSS+MPFKAFAVASLFVGAAASSA
Sbjct: 30  ENGGSDGGSNAHWWWALAGATQFGWGIASFRRGVIGDSSLMPFKAFAVASLFVGAAASSA 89

Query: 64  IASLKASGIHKVGFTSPPRFCFILLNWAFNQVEDVMEVGANIRNGLGIRPRTPDE 119
           IASLKA+GIHK                    VEDVMEVGANIR GLGIRPRT DE
Sbjct: 90  IASLKAAGIHK--------------------VEDVMEVGANIRTGLGIRPRTRDE 124

BLAST of Sed0014312 vs. ExPASy TrEMBL
Match: A0A6J1CU84 (uncharacterized protein LOC111014824 OS=Momordica charantia OX=3673 GN=LOC111014824 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 7.7e-32
Identity = 78/115 (67.83%), Postives = 86/115 (74.78%), Query Frame = 0

Query: 4   EEGGSGGGGNGHWWWALAGATQLGWGVASFRRGVIGDSSIMPFKAFAVASLFVGAAASSA 63
           E+ G  GG N HWWWALAGATQ GWG+ASFRRG IG+SS+MPFKAFAVASLFVGAAASSA
Sbjct: 2   EDNGGDGGSNAHWWWALAGATQFGWGIASFRRGFIGNSSLMPFKAFAVASLFVGAAASSA 61

Query: 64  IASLKASGIHKVGFTSPPRFCFILLNWAFNQVEDVMEVGANIRNGLGIRPRTPDE 119
           IASLKASGIHK                    VEDVME+GA+IR+GLG+RPR  DE
Sbjct: 62  IASLKASGIHK--------------------VEDVMEIGASIRSGLGVRPRARDE 96

BLAST of Sed0014312 vs. ExPASy TrEMBL
Match: A0A1S3AUW2 (uncharacterized protein LOC103483131 OS=Cucumis melo OX=3656 GN=LOC103483131 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.3e-30
Identity = 78/115 (67.83%), Postives = 82/115 (71.30%), Query Frame = 0

Query: 4   EEGGSGGGGNGHWWWALAGATQLGWGVASFRRGVIGDSSIMPFKAFAVASLFVGAAASSA 63
           E GGS GG N HWWWA AGA QLGWG+ASFRRG +GDSS MP KAFAVASLFVGAAASSA
Sbjct: 31  ENGGSDGGSNAHWWWAFAGAGQLGWGIASFRRGFVGDSSTMPLKAFAVASLFVGAAASSA 90

Query: 64  IASLKASGIHKVGFTSPPRFCFILLNWAFNQVEDVMEVGANIRNGLGIRPRTPDE 119
           IASLKASGIHK                    VEDVMEVGA IR+GLGIR R  D+
Sbjct: 91  IASLKASGIHK--------------------VEDVMEVGARIRSGLGIRSRAQDK 125

BLAST of Sed0014312 vs. ExPASy TrEMBL
Match: A0A6J1E8F9 (uncharacterized protein LOC111431802 OS=Cucurbita moschata OX=3662 GN=LOC111431802 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.6e-29
Identity = 76/115 (66.09%), Postives = 83/115 (72.17%), Query Frame = 0

Query: 4   EEGGSGGGGNGHWWWALAGATQLGWGVASFRRGVIGDSSIMPFKAFAVASLFVGAAASSA 63
           E GGS G  N HWWWAL GATQLGWG+ASFRRG+IG+SS+MP KAFAVASLFVG  AS A
Sbjct: 16  ENGGSDGVSNAHWWWALPGATQLGWGIASFRRGLIGNSSLMPLKAFAVASLFVGGGASCA 75

Query: 64  IASLKASGIHKVGFTSPPRFCFILLNWAFNQVEDVMEVGANIRNGLGIRPRTPDE 119
           IASLKASGIHK                    VED+MEVGA+IR+GLGIRPR  DE
Sbjct: 76  IASLKASGIHK--------------------VEDMMEVGASIRSGLGIRPRPQDE 110

BLAST of Sed0014312 vs. TAIR 10
Match: AT3G60480.1 (unknown protein; Has 17 Blast hits to 17 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 97.4 bits (241), Expect = 7.9e-21
Identity = 52/124 (41.94%), Postives = 72/124 (58.06%), Query Frame = 0

Query: 1   MEAEEGGSGGG------GNGHWWWALAGATQLGWGVASFRRGVIGDSSIMPFKAFAVASL 60
           ME +  G+G G      G+GHWWWAL    Q+ WG+   RRG  GD  +MP KAF VASL
Sbjct: 1   MEEQNAGTGAGESSLLDGSGHWWWALGSGAQIMWGIRLIRRGYAGDVRLMPLKAFGVASL 60

Query: 61  FVGAAASSAIASLKASGIHKVGFTSPPRFCFILLNWAFNQVEDVMEVGANIRNGLGIRPR 119
           FVG+ A+S++A ++A+GIH                     V+D +++GANIR  LG+ P+
Sbjct: 61  FVGSLATSSVALVRATGIH--------------------TVQDAIDLGANIRTNLGVTPQ 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022974845.12.4e-3574.78uncharacterized protein LOC111473617 isoform X1 [Cucurbita maxima] >XP_022975308... [more]
XP_022941577.11.5e-3473.91uncharacterized protein LOC111446882 isoform X2 [Cucurbita moschata] >KAG7028515... [more]
KAG6597040.11.5e-3473.91hypothetical protein SDJN03_10220, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023540026.12.0e-3473.04uncharacterized protein LOC111800524 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022145350.11.6e-3167.83uncharacterized protein LOC111014824 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1IIU11.2e-3574.78uncharacterized protein LOC111473617 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1FMU07.5e-3573.91uncharacterized protein LOC111446882 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1CU847.7e-3267.83uncharacterized protein LOC111014824 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A1S3AUW23.3e-3067.83uncharacterized protein LOC103483131 OS=Cucumis melo OX=3656 GN=LOC103483131 PE=... [more]
A0A6J1E8F91.6e-2966.09uncharacterized protein LOC111431802 OS=Cucurbita moschata OX=3662 GN=LOC1114318... [more]
Match NameE-valueIdentityDescription
AT3G60480.17.9e-2141.94unknown protein; Has 17 Blast hits to 17 proteins in 8 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37744STAR LIPID TRANSFER-LIKE PROTEINcoord: 4..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0014312.1Sed0014312.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane