Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTGGTTACTCGAAAAACGCCGTCGTCGTCGTCGTCTTCCGTTTCGATGTTAAACCCTAATGATGCTCCACTGTTCGATCCTATGGCGGATGACTTCTCCTATTATTGGTTTTTTCCGATCCATTCCCCTCCCTCATTTCGCTGGATCGATGTAGGCTTTCAATATCCTCAAATCGATCTTTCCTTTTCAGATGACGAAGAATTCATCCTTACACGTCTCTGCACTTGCTTCAAGGAACGCGCACATCAAAGTATGAACTGAAATCGAGTCATCGGTTGAATCGGTTTTGTTTCCTCTCTTAACCTAATTCGCTAATTCCTTGTTTCTTTTCTTTAATTCTTGAAGTGGAGAAGCTCGAATTCTCGAAGGATTTGGCTCCGAGTAGGGCTTCCAAACGGAAGAAGGCTAGGACTGGGCCGGAGGCTCCTAGGTTTGCTCAAAAGCCTCCCAAGACCGTCAACGTCAAAGTGAGTCCAAGAAGGATCCACCAGCCGAGATAG
mRNA sequence
ATGGATGTGGTTACTCGAAAAACGCCGTCGTCGTCGTCGTCTTCCGTTTCGATGTTAAACCCTAATGATGCTCCACTGTTCGATCCTATGGCGGATGACTTCTCCTATTATTGGTTTTTTCCGATCCATTCCCCTCCCTCATTTCGCTGGATCGATGTAGGCTTTCAATATCCTCAAATCGATCTTTCCTTTTCAGATGACGAAGAATTCATCCTTACACGTCTCTGCACTTGCTTCAAGGAACGCGCACATCAAATGGAGAAGCTCGAATTCTCGAAGGATTTGGCTCCGAGTAGGGCTTCCAAACGGAAGAAGGCTAGGACTGGGCCGGAGGCTCCTAGGTTTGCTCAAAAGCCTCCCAAGACCGTCAACGTCAAAGTGAGTCCAAGAAGGATCCACCAGCCGAGATAG
Coding sequence (CDS)
ATGGATGTGGTTACTCGAAAAACGCCGTCGTCGTCGTCGTCTTCCGTTTCGATGTTAAACCCTAATGATGCTCCACTGTTCGATCCTATGGCGGATGACTTCTCCTATTATTGGTTTTTTCCGATCCATTCCCCTCCCTCATTTCGCTGGATCGATGTAGGCTTTCAATATCCTCAAATCGATCTTTCCTTTTCAGATGACGAAGAATTCATCCTTACACGTCTCTGCACTTGCTTCAAGGAACGCGCACATCAAATGGAGAAGCTCGAATTCTCGAAGGATTTGGCTCCGAGTAGGGCTTCCAAACGGAAGAAGGCTAGGACTGGGCCGGAGGCTCCTAGGTTTGCTCAAAAGCCTCCCAAGACCGTCAACGTCAAAGTGAGTCCAAGAAGGATCCACCAGCCGAGATAG
Protein sequence
MDVVTRKTPSSSSSSVSMLNPNDAPLFDPMADDFSYYWFFPIHSPPSFRWIDVGFQYPQIDLSFSDDEEFILTRLCTCFKERAHQMEKLEFSKDLAPSRASKRKKARTGPEAPRFAQKPPKTVNVKVSPRRIHQPR
Homology
BLAST of Sed0013824 vs. NCBI nr
Match:
KGN45812.1 (hypothetical protein Csa_005499 [Cucumis sativus])
HSP 1 Score: 127.9 bits (320), Expect = 6.8e-26
Identity = 83/144 (57.64%), Postives = 100/144 (69.44%), Query Frame = 0
Query: 1 MDVVTRKTPSSSSSSVSMLNPNDAPLFDPMA----DDFSYYWFFPIHSPPSFR--WIDVG 60
MDVVT++ +SSSSVSMLNPN APLF PMA +DFS W+ I S P FR W+
Sbjct: 1 MDVVTQR---NSSSSVSMLNPN-APLFVPMAYRTVEDFSDQWWELIQSSPWFREYWLQER 60
Query: 61 FQYPQIDLSFSDDEEFILTRLCTCFKE--RAHQMEKLEFSKDLAPSRASKRKKARTGPEA 120
FQ PQ +LSF ++EEFIL L + F + R + E+LEFSKDL P A K +KAR+G E
Sbjct: 61 FQDPQNELSFGENEEFILPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEV 120
Query: 121 PRFAQKPPKTVNVKVSPRRIHQPR 137
P++AQK PK VNVKVSPR IHQPR
Sbjct: 121 PKYAQKAPKIVNVKVSPRTIHQPR 140
BLAST of Sed0013824 vs. NCBI nr
Match:
KAG7033281.1 (Protein EARLY RESPONSIVE TO DEHYDRATION 15, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 127.1 bits (318), Expect = 1.2e-25
Identity = 83/144 (57.64%), Postives = 96/144 (66.67%), Query Frame = 0
Query: 1 MDVVTRKTPSSSSSSVSMLNPNDAPLFDPMA----DDFSYYWFFPIHSPPSFR--WIDVG 60
MDVV R+T SSSSVSMLNPN APLF PMA +DFS W+ I S P FR W+
Sbjct: 32 MDVVARRT---SSSSVSMLNPN-APLFVPMAYRTVEDFSDQWWNLIQSSPWFREYWLQER 91
Query: 61 FQYPQIDLSFSDDEEFILTRLCTCFKERAHQM--EKLEFSKDLAPSRASKRKKARTGPEA 120
FQ PQ D SF+++EE +L L F++ A Q E+ EFSKDL P A K KA+TG E
Sbjct: 92 FQDPQNDFSFAENEEIVLPDLENIFEDFARQQEEEEFEFSKDLVPMGAFKWHKAQTGAEV 151
Query: 121 PRFAQKPPKTVNVKVSPRRIHQPR 137
PR+AQK PK VNVKVSPR IHQPR
Sbjct: 152 PRYAQKAPKIVNVKVSPRTIHQPR 171
BLAST of Sed0013824 vs. NCBI nr
Match:
XP_022990060.1 (protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucurbita maxima])
HSP 1 Score: 126.7 bits (317), Expect = 1.5e-25
Identity = 83/144 (57.64%), Postives = 95/144 (65.97%), Query Frame = 0
Query: 1 MDVVTRKTPSSSSSSVSMLNPNDAPLFDPMA----DDFSYYWFFPIHSPPSFR--WIDVG 60
MDVV R+T SSSSVSMLNPN APLF PMA +DFS W+ I S P FR W+
Sbjct: 1 MDVVARRT---SSSSVSMLNPN-APLFVPMAYRTVEDFSDQWWNLIQSSPWFREYWLQER 60
Query: 61 FQYPQIDLSFSDDEEFILTRLCTCFKERAHQM--EKLEFSKDLAPSRASKRKKARTGPEA 120
FQ PQ D SF+++EE +L L F + A Q E+ EFSKDL P A K KA+TG E
Sbjct: 61 FQDPQNDFSFAENEEIVLPDLENIFDDLARQQEEEEFEFSKDLVPMGAFKWHKAQTGAEV 120
Query: 121 PRFAQKPPKTVNVKVSPRRIHQPR 137
PR+AQK PK VNVKVSPR IHQPR
Sbjct: 121 PRYAQKAPKIVNVKVSPRTIHQPR 140
BLAST of Sed0013824 vs. NCBI nr
Match:
KAG6602602.1 (Protein EARLY RESPONSIVE TO DEHYDRATION 15, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 125.6 bits (314), Expect = 3.4e-25
Identity = 82/144 (56.94%), Postives = 96/144 (66.67%), Query Frame = 0
Query: 1 MDVVTRKTPSSSSSSVSMLNPNDAPLFDPMA----DDFSYYWFFPIHSPPSFR--WIDVG 60
MDVV R+ +SSSSVSMLNPN APLF PMA +DFS W+ I S P FR W+
Sbjct: 1 MDVVARR---NSSSSVSMLNPN-APLFVPMAYRTVEDFSDQWWNLIQSSPWFREYWLQER 60
Query: 61 FQYPQIDLSFSDDEEFILTRLCTCFKERAHQM--EKLEFSKDLAPSRASKRKKARTGPEA 120
FQ PQ D SF+++EE +L L F++ A Q E+ EFSKDL P A K KA+TG E
Sbjct: 61 FQDPQNDFSFAENEEIVLPDLENIFEDFARQQEEEEFEFSKDLVPMGAFKWHKAQTGAEV 120
Query: 121 PRFAQKPPKTVNVKVSPRRIHQPR 137
PR+AQK PK VNVKVSPR IHQPR
Sbjct: 121 PRYAQKAPKIVNVKVSPRTIHQPR 140
BLAST of Sed0013824 vs. NCBI nr
Match:
KAA0052043.1 (Poly(A)-binding protein C-terminal interacting protein 6 [Cucumis melo var. makuwa] >TYK04518.1 Poly(A)-binding protein C-terminal interacting protein 6 [Cucumis melo var. makuwa])
HSP 1 Score: 125.6 bits (314), Expect = 3.4e-25
Identity = 81/144 (56.25%), Postives = 99/144 (68.75%), Query Frame = 0
Query: 1 MDVVTRKTPSSSSSSVSMLNPNDAPLFDPMA----DDFSYYWFFPIHSPPSFR--WIDVG 60
MDVVT++ +SSSSVSMLNPN APLF PMA +DFS W+ I S P FR W+
Sbjct: 1 MDVVTQR---NSSSSVSMLNPN-APLFVPMAYRTVEDFSDQWWELIQSSPWFREYWLQER 60
Query: 61 FQYPQIDLSFSDDEEFILTRLCTCFKE--RAHQMEKLEFSKDLAPSRASKRKKARTGPEA 120
FQ PQ +L F ++EEF+L L + F + R + E+LEFSKDL P A K +KAR+G E
Sbjct: 61 FQDPQNELPFGENEEFVLPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEV 120
Query: 121 PRFAQKPPKTVNVKVSPRRIHQPR 137
P++AQK PK VNVKVSPR IHQPR
Sbjct: 121 PKYAQKAPKIVNVKVSPRTIHQPR 140
BLAST of Sed0013824 vs. ExPASy Swiss-Prot
Match:
I1JIC4 (Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Glycine max OX=3847 GN=ERD15 PE=2 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 1.3e-08
Identity = 51/129 (39.53%), Postives = 65/129 (50.39%), Query Frame = 0
Query: 15 SVSMLNPNDAPLFDPMA----DDFSYYWFFPIHSPPSFR--WIDVGFQYPQIDLSFSDDE 74
S S LNPN AP+F P+A +DFS W+ +HS P FR W+ FQ PQ + D
Sbjct: 5 SASSLNPN-APMFVPLAYRTVEDFSDQWWNLVHSSPWFRDYWLRECFQDPQFQNDDAFDF 64
Query: 75 EFILTRLCTCFKERAHQMEKLEFSKDLAPSRASKRKKARTG-PEAPRFAQKPPKTVNVKV 134
+F L KER K++ K + G +APR+ +K PK V KV
Sbjct: 65 DFDLDLQDEDEKERKE-------GKEVVSLGVLKWRSCGGGWAQAPRYVEKAPKFVKPKV 124
Query: 135 SPRRIHQPR 137
SPR IHQPR
Sbjct: 125 SPRAIHQPR 125
BLAST of Sed0013824 vs. ExPASy TrEMBL
Match:
A0A0A0KBP8 (Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis sativus OX=3659 GN=Csa_6G013350 PE=4 SV=1)
HSP 1 Score: 127.9 bits (320), Expect = 3.3e-26
Identity = 83/144 (57.64%), Postives = 100/144 (69.44%), Query Frame = 0
Query: 1 MDVVTRKTPSSSSSSVSMLNPNDAPLFDPMA----DDFSYYWFFPIHSPPSFR--WIDVG 60
MDVVT++ +SSSSVSMLNPN APLF PMA +DFS W+ I S P FR W+
Sbjct: 1 MDVVTQR---NSSSSVSMLNPN-APLFVPMAYRTVEDFSDQWWELIQSSPWFREYWLQER 60
Query: 61 FQYPQIDLSFSDDEEFILTRLCTCFKE--RAHQMEKLEFSKDLAPSRASKRKKARTGPEA 120
FQ PQ +LSF ++EEFIL L + F + R + E+LEFSKDL P A K +KAR+G E
Sbjct: 61 FQDPQNELSFGENEEFILPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEV 120
Query: 121 PRFAQKPPKTVNVKVSPRRIHQPR 137
P++AQK PK VNVKVSPR IHQPR
Sbjct: 121 PKYAQKAPKIVNVKVSPRTIHQPR 140
BLAST of Sed0013824 vs. ExPASy TrEMBL
Match:
A0A6J1JP33 (protein EARLY RESPONSIVE TO DEHYDRATION 15-like OS=Cucurbita maxima OX=3661 GN=LOC111487067 PE=4 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 7.3e-26
Identity = 83/144 (57.64%), Postives = 95/144 (65.97%), Query Frame = 0
Query: 1 MDVVTRKTPSSSSSSVSMLNPNDAPLFDPMA----DDFSYYWFFPIHSPPSFR--WIDVG 60
MDVV R+T SSSSVSMLNPN APLF PMA +DFS W+ I S P FR W+
Sbjct: 1 MDVVARRT---SSSSVSMLNPN-APLFVPMAYRTVEDFSDQWWNLIQSSPWFREYWLQER 60
Query: 61 FQYPQIDLSFSDDEEFILTRLCTCFKERAHQM--EKLEFSKDLAPSRASKRKKARTGPEA 120
FQ PQ D SF+++EE +L L F + A Q E+ EFSKDL P A K KA+TG E
Sbjct: 61 FQDPQNDFSFAENEEIVLPDLENIFDDLARQQEEEEFEFSKDLVPMGAFKWHKAQTGAEV 120
Query: 121 PRFAQKPPKTVNVKVSPRRIHQPR 137
PR+AQK PK VNVKVSPR IHQPR
Sbjct: 121 PRYAQKAPKIVNVKVSPRTIHQPR 140
BLAST of Sed0013824 vs. ExPASy TrEMBL
Match:
A0A5D3BZS0 (Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001350 PE=4 SV=1)
HSP 1 Score: 125.6 bits (314), Expect = 1.6e-25
Identity = 81/144 (56.25%), Postives = 99/144 (68.75%), Query Frame = 0
Query: 1 MDVVTRKTPSSSSSSVSMLNPNDAPLFDPMA----DDFSYYWFFPIHSPPSFR--WIDVG 60
MDVVT++ +SSSSVSMLNPN APLF PMA +DFS W+ I S P FR W+
Sbjct: 1 MDVVTQR---NSSSSVSMLNPN-APLFVPMAYRTVEDFSDQWWELIQSSPWFREYWLQER 60
Query: 61 FQYPQIDLSFSDDEEFILTRLCTCFKE--RAHQMEKLEFSKDLAPSRASKRKKARTGPEA 120
FQ PQ +L F ++EEF+L L + F + R + E+LEFSKDL P A K +KAR+G E
Sbjct: 61 FQDPQNELPFGENEEFVLPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEV 120
Query: 121 PRFAQKPPKTVNVKVSPRRIHQPR 137
P++AQK PK VNVKVSPR IHQPR
Sbjct: 121 PKYAQKAPKIVNVKVSPRTIHQPR 140
BLAST of Sed0013824 vs. ExPASy TrEMBL
Match:
A0A6J1JQA7 (protein EARLY RESPONSIVE TO DEHYDRATION 15-like OS=Cucurbita maxima OX=3661 GN=LOC111488890 PE=4 SV=1)
HSP 1 Score: 120.6 bits (301), Expect = 5.2e-24
Identity = 81/144 (56.25%), Postives = 96/144 (66.67%), Query Frame = 0
Query: 1 MDVVTRKTPSSSSSSVSMLNPNDAPLFDPMA----DDFSYYWFFPIHSPPSFR--WIDVG 60
MDVV ++SSSSVSMLNPN APLF PMA +DFS W+ I S P FR W+
Sbjct: 1 MDVVAL---TNSSSSVSMLNPN-APLFVPMAYRTVEDFSDQWWDLIQSSPWFREYWLQER 60
Query: 61 FQYPQIDLSFSDDEEFILTRLCTCFKERAHQM--EKLEFSKDLAPSRASKRKKARTGPEA 120
FQ PQ DLSF++++E +L L ++ A Q E+LEFSKDL P A K KARTG E
Sbjct: 61 FQDPQNDLSFAENDEIVLPDLENFLEDFACQQEEEELEFSKDLVPMGAFKWHKARTGAEV 120
Query: 121 PRFAQKPPKTVNVKVSPRRIHQPR 137
PR+AQK PK VNVKV+PR IHQPR
Sbjct: 121 PRYAQKAPKIVNVKVTPRTIHQPR 140
BLAST of Sed0013824 vs. ExPASy TrEMBL
Match:
A0A6J1FFC6 (protein EARLY RESPONSIVE TO DEHYDRATION 15-like OS=Cucurbita moschata OX=3662 GN=LOC111445213 PE=4 SV=1)
HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 81/144 (56.25%), Postives = 95/144 (65.97%), Query Frame = 0
Query: 1 MDVVTRKTPSSSSSSVSMLNPNDAPLFDPMA----DDFSYYWFFPIHSPPSFR--WIDVG 60
MDVV ++SSSSVSMLNPN APLF PMA +DFS W+ I S P FR W+
Sbjct: 1 MDVVAL---TNSSSSVSMLNPN-APLFVPMAYRTVEDFSDQWWDLIQSSPWFREYWLQER 60
Query: 61 FQYPQIDLSFSDDEEFILTRLCTCFKERAHQM--EKLEFSKDLAPSRASKRKKARTGPEA 120
FQ PQ DLSF +++E +L L ++ A Q E+LEFSKDL P A K KARTG E
Sbjct: 61 FQDPQNDLSFLENDEIVLPDLENFLEDFACQQEEEELEFSKDLVPMGAFKWHKARTGAEV 120
Query: 121 PRFAQKPPKTVNVKVSPRRIHQPR 137
PR+AQK PK VNVKV+PR IHQPR
Sbjct: 121 PRYAQKAPKIVNVKVTPRTIHQPR 140
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN45812.1 | 6.8e-26 | 57.64 | hypothetical protein Csa_005499 [Cucumis sativus] | [more] |
| KAG7033281.1 | 1.2e-25 | 57.64 | Protein EARLY RESPONSIVE TO DEHYDRATION 15, partial [Cucurbita argyrosperma subs... | [more] |
| XP_022990060.1 | 1.5e-25 | 57.64 | protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucurbita maxima] | [more] |
| KAG6602602.1 | 3.4e-25 | 56.94 | Protein EARLY RESPONSIVE TO DEHYDRATION 15, partial [Cucurbita argyrosperma subs... | [more] |
| KAA0052043.1 | 3.4e-25 | 56.25 | Poly(A)-binding protein C-terminal interacting protein 6 [Cucumis melo var. maku... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| I1JIC4 | 1.3e-08 | 39.53 | Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Glycine max OX=3847 GN=ERD15 PE=2 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KBP8 | 3.3e-26 | 57.64 | Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis sativus OX=3... | [more] |
| A0A6J1JP33 | 7.3e-26 | 57.64 | protein EARLY RESPONSIVE TO DEHYDRATION 15-like OS=Cucurbita maxima OX=3661 GN=L... | [more] |
| A0A5D3BZS0 | 1.6e-25 | 56.25 | Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis melo var. ma... | [more] |
| A0A6J1JQA7 | 5.2e-24 | 56.25 | protein EARLY RESPONSIVE TO DEHYDRATION 15-like OS=Cucurbita maxima OX=3661 GN=L... | [more] |
| A0A6J1FFC6 | 1.2e-23 | 56.25 | protein EARLY RESPONSIVE TO DEHYDRATION 15-like OS=Cucurbita moschata OX=3662 GN... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
