Sed0013507 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSexonpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTGTTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCAGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAAATCACTTACCTCAAAAATCAAATGCAGAACAGAGAGACGGCTGAATCAAGCCATAGTCTACATGAGAGAGTTAATGATAAAGGAAAGAACCCTCTCTTTGAAGCACAACAACTACACTCAACCTCAGTTGCTTCCTTGTCTGTCCAATAG ATGTCTGTTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCAGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAAATCACTTACCTCAAAAATCAAATGCAGAACAGAGAGACGGCTGAATCAAGCCATAGTCTACATGAGAGAGTTAATGATAAAGGAAAGAACCCTCTCTTTGAAGCACAACAACTACACTCAACCTCAGTTGCTTCCTTGTCTGTCCAATAG ATGTCTGTTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCAGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAAATCACTTACCTCAAAAATCAAATGCAGAACAGAGAGACGGCTGAATCAAGCCATAGTCTACATGAGAGAGTTAATGATAAAGGAAAGAACCCTCTCTTTGAAGCACAACAACTACACTCAACCTCAGTTGCTTCCTTGTCTGTCCAATAG MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQQLHSTSVASLSVQ Homology
BLAST of Sed0013507 vs. NCBI nr
Match: KAA0035315.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 78.6 bits (192), Expect = 2.9e-11 Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 0
BLAST of Sed0013507 vs. NCBI nr
Match: TYK14321.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 78.6 bits (192), Expect = 2.9e-11 Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 0
BLAST of Sed0013507 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus]) HSP 1 Score: 78.2 bits (191), Expect = 3.8e-11 Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 0
BLAST of Sed0013507 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus]) HSP 1 Score: 78.2 bits (191), Expect = 3.8e-11 Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 0
BLAST of Sed0013507 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus]) HSP 1 Score: 78.2 bits (191), Expect = 3.8e-11 Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 0
BLAST of Sed0013507 vs. ExPASy TrEMBL
Match: A0A5D3CRB1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00500 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11 Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 0
BLAST of Sed0013507 vs. ExPASy TrEMBL
Match: A0A5A7T1J1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold228G001140 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11 Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 0
BLAST of Sed0013507 vs. ExPASy TrEMBL
Match: A0A5A7VAV4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00190 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.8e-11 Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 0
BLAST of Sed0013507 vs. ExPASy TrEMBL
Match: A0A5D3D4X3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001130 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.8e-11 Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 0
BLAST of Sed0013507 vs. ExPASy TrEMBL
Match: A0A5A7STX4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00340 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 5.3e-11 Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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