Sed0013507 (gene) Chayote v1

Overview


Name	Sed0013507
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ty3-gypsy retrotransposon protein
Location	LG05: 22077004 .. 22077255 (-)
RNA-Seq Expression	Sed0013507
Synteny	Sed0013507

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGTTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCAGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAAATCACTTACCTCAAAAATCAAATGCAGAACAGAGAGACGGCTGAATCAAGCCATAGTCTACATGAGAGAGTTAATGATAAAGGAAAGAACCCTCTCTTTGAAGCACAACAACTACACTCAACCTCAGTTGCTTCCTTGTCTGTCCAATAG

mRNA sequence

ATGTCTGTTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCAGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAAATCACTTACCTCAAAAATCAAATGCAGAACAGAGAGACGGCTGAATCAAGCCATAGTCTACATGAGAGAGTTAATGATAAAGGAAAGAACCCTCTCTTTGAAGCACAACAACTACACTCAACCTCAGTTGCTTCCTTGTCTGTCCAATAG

Coding sequence (CDS)

ATGTCTGTTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCAGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAAATCACTTACCTCAAAAATCAAATGCAGAACAGAGAGACGGCTGAATCAAGCCATAGTCTACATGAGAGAGTTAATGATAAAGGAAAGAACCCTCTCTTTGAAGCACAACAACTACACTCAACCTCAGTTGCTTCCTTGTCTGTCCAATAG

Protein sequence

MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVNDKGKNPLFEAQQLHSTSVASLSVQ

Homology

[Close]

BLAST of Sed0013507 vs. NCBI nr
Match: KAA0035315.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.9e-11
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVN 60
           MSVM+   D  ++RMAE E+K+  +MK +EERD EI +LKN +++R+TAESSH    +  
Sbjct: 82  MSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDTAESSHKHTVKNT 141

Query: 61  DKGKNPLFEAQQLHSTSVASLSVQ 84
           DKGK  + E+Q  +STS+ASLSVQ
Sbjct: 142 DKGKAVMQESQPQNSTSIASLSVQ 165

[Close]

BLAST of Sed0013507 vs. NCBI nr
Match: TYK14321.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.9e-11
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVN 60
           MSVM+   D  ++RMAE E+K+  +MK +EERD EI +LKN +++R+TAESSH    +  
Sbjct: 82  MSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDTAESSHKHTVKNT 141

Query: 61  DKGKNPLFEAQQLHSTSVASLSVQ 84
           DKGK  + E+Q  +STS+ASLSVQ
Sbjct: 142 DKGKAVMQESQPQNSTSIASLSVQ 165

[Close]

BLAST of Sed0013507 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 3.8e-11
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 1   MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVND 60
           MSVMMA    +  MAE ERK+  +MK ++ERD EI  LK QMQ RETAESS +   +V+D
Sbjct: 82  MSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDD 141

Query: 61  KGKNPLFEAQ-QLHSTSVASLSVQ 84
           KGKN + E Q Q  STSVASLSVQ
Sbjct: 142 KGKNVVQENQPQQQSTSVASLSVQ 165

[Close]

BLAST of Sed0013507 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 3.8e-11
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 1   MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVND 60
           MSVMMA    +  MAE ERK+  +MK ++ERD EI  LK QMQ RETAESS +   +V+D
Sbjct: 82  MSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDD 141

Query: 61  KGKNPLFEAQ-QLHSTSVASLSVQ 84
           KGKN + E Q Q  STSVASLSVQ
Sbjct: 142 KGKNVVQENQPQQQSTSVASLSVQ 165

[Close]

BLAST of Sed0013507 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 3.8e-11
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 1   MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVND 60
           MSVMMA    +  MAE ERK+  +MK ++ERD EI  LK QMQ RETAESS +   +V+D
Sbjct: 82  MSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDD 141

Query: 61  KGKNPLFEAQ-QLHSTSVASLSVQ 84
           KGKN + E Q Q  STSVASLSVQ
Sbjct: 142 KGKNVVQENQPQQQSTSVASLSVQ 165

[Close]

BLAST of Sed0013507 vs. ExPASy TrEMBL
Match: A0A5D3CRB1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00500 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVN 60
           MSVM+   D  ++RMAE E+K+  +MK +EERD EI +LKN +++R+TAESSH    +  
Sbjct: 82  MSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDTAESSHKHTVKNT 141

Query: 61  DKGKNPLFEAQQLHSTSVASLSVQ 84
           DKGK  + E+Q  +STS+ASLSVQ
Sbjct: 142 DKGKAVMQESQPQNSTSIASLSVQ 165

[Close]

BLAST of Sed0013507 vs. ExPASy TrEMBL
Match: A0A5A7T1J1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold228G001140 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVN 60
           MSVM+   D  ++RMAE E+K+  +MK +EERD EI +LKN +++R+TAESSH    +  
Sbjct: 82  MSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDTAESSHKHTVKNT 141

Query: 61  DKGKNPLFEAQQLHSTSVASLSVQ 84
           DKGK  + E+Q  +STS+ASLSVQ
Sbjct: 142 DKGKAVMQESQPQNSTSIASLSVQ 165

[Close]

BLAST of Sed0013507 vs. ExPASy TrEMBL
Match: A0A5A7VAV4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00190 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.8e-11
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVN 60
           MSVM+A  D  ++RMAE E+K+  +MK +EERD EI +LKN +++R+ AESSH    +  
Sbjct: 82  MSVMVANVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNT 141

Query: 61  DKGKNPLFEAQQLHSTSVASLSVQ 84
           DKGK  + E+Q  +STS+ASLSVQ
Sbjct: 142 DKGKAVMQESQPQNSTSIASLSVQ 165

[Close]

BLAST of Sed0013507 vs. ExPASy TrEMBL
Match: A0A5D3D4X3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001130 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.8e-11
Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 1   MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVN 60
           MSVM+   D  +DRMAE E+K+  +MK +EERD EI +LKN +++R+ AESSH    +  
Sbjct: 50  MSVMVTDVDESEDRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNT 109

Query: 61  DKGKNPLFEAQQLHSTSVASLSVQ 84
           DKGK  + E+Q  +STS+ASLSVQ
Sbjct: 110 DKGKAVMQESQPQNSTSIASLSVQ 133

[Close]

BLAST of Sed0013507 vs. ExPASy TrEMBL
Match: A0A5A7STX4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00340 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.3e-11
Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 1   MSVMMAG-DGGDDRMAEFERKLEQMMKTIEERDLEITYLKNQMQNRETAESSHSLHERVN 60
           MSVM+   D  ++RMAE E+K+  +MK +EERD EI +LKN +++ +TAESSH    +  
Sbjct: 82  MSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESHDTAESSHKHTVKNT 141

Query: 61  DKGKNPLFEAQQLHSTSVASLSVQ 84
           DKGK  + E+Q  +STS+ASLSVQ
Sbjct: 142 DKGKAVMQESQPQNSTSIASLSVQ 165

The following BLAST results are available for this feature:

BLAST of Sed0013507 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035315.1	2.9e-11	52.38	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK14321.1	2.9e-11	52.38	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_031739134.1	3.8e-11	59.52	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	3.8e-11	59.52	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031742199.1	3.8e-11	59.52	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]

BLAST of Sed0013507 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0013507 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CRB1	1.4e-11	52.38	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T1J1	1.4e-11	52.38	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7VAV4	1.8e-11	52.38	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3D4X3	1.8e-11	52.38	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7STX4	5.3e-11	51.19	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Sed0013507 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013507.1	Sed0013507.1	mRNA