Sed0013286 (gene) Chayote v1

Overview


Name	Sed0013286
Type	gene
Organism	Sechium edule (Chayote v1)
Description	TGF-beta-activated kinase 1 and MAP3K7-binding protein like
Location	LG03: 5402462 .. 5404129 (-)
RNA-Seq Expression	Sed0013286
Synteny	Sed0013286

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAAATTCTTTCATTATTCAGAAATATTAAATGAATAAAAATTCAATCGGTTTGACCACCGAAGAATATGTTCTTCTTAATCCCTACCCTCTTTATAACTCCCAAGAAAACAGCTTTTTCTTCTCGGAAATTAGGCCAGTTTTTCAAATATCGCCAAATTTTGTTTAGTTTTCTATCAGAAACCTGGAAACTAATAAATACCAAGAAAGAAAGAAAGAGAGAGAGAGAAACCACAAAAAAAAAAAGCAAAATTGTGTGAAAAAAGAGAGATAAAATCGAGGCCTGAAACATGGTTTGTTGTGTTTATGGAATATCAGTGAAGCCAAATGTTGTGGCTTTGCCTGTAGTATTTCGTCGTTCTAATTTTCAAGTAAGAGCTCAGAGTTTCAGAGATGAAGGTGACTTTTCTTTCTCATACTTCGCTTCTAAAACAAAACACATTTGGTTTTCTTTCTTTTTGTCAAGCAATTCGCAGTGATTTAGCTCTTGAATTTTTAATATGTAGCGTATAAAGTAAAAACAGCTATCTTTAAAAGATTGGATTTTTTTTTTTCTTTCATCAACAATATATTGGTCACTAGATTGTACAAGACAGTCATGTGCATTTTTTTTTGTTCTAACTCAACTACTTAATTCGTGTGCTAAAAACTTGAAACAATATAGACTCCTTCGCAAGTAATCTAATTGGTTTTGAAAAATTATGTTCTATTTTCTTTAAAAATAAAAATTCTCTTCATAAGTTCTTTGAATTCTAAGTTGCATTCACAAAAATAAATTTTAATTAAAAAAAAAAAACTGTTTCTTAGTTGACTGTCTTGATTGTTTAAACGTTTTCAAAAAATCGGAGGCTACGTGTATATTTGGAACTAAAAAATAAGAACAAAATAGTTATCATCTAAAAAAGTGTATACTTGGTTGACATAAATTTGAGGTTTTTAAGACGTAAGTTTCTTTAGAAATTTCAAATTCAAATCTTGTAAATAAATTTAATCGTAAAGTTTCTTATTATCTTTCAAGTCCAAATTTTAGAATAACACTATAGATATGGAGTGGTGTCAACTATTATATAAAATAATCGGACTTCTATTATATCAACTACAGATATGTATTTATTGGTTCAAAAGAAATAATTTCCAATTTTATATATATATATATATATATATATATTGTAAAATTTGTCAAAAACAAGGAAATTCTTTATTTTATGTATAATTTACATTGTGAAGCTATGTGGATTTGGTGCAGGAAGGTTCAGTGAGATGGTAGATGCCAATTTGGGAGTTTTAAGAGAGAGAATGGAAGAGGTGAAGATGAGAGAGAAATTAGAGAAATGTTTCAATAACACACACAAACATTATGGATGGAACTATGCAGCTTCATATGATTACAAAGTCAAAAAGACCAAACAATTTTCTAACTTTCTTCACTTCTTATTGGTAATTAGTGGTTCTCTAGGTTTTACATTTTTTACTGGTAGTTTTTCACTTTGTTTAATTTCTTTTATAGTTCATTTCAACCATTAAATTTAACAATAACAATTTCATTTGTTGATTCGTATCAATGTTTTTAGATTTGTTTGATCAATTTAGTGTATTATATTTTAGATTAGGGTAATTAGCTTTATCTTTTGTGTTTTGATTGTAAACTTACGTCTTATGGTAATGGAG

mRNA sequence

CCCAAATTCTTTCATTATTCAGAAATATTAAATGAATAAAAATTCAATCGGTTTGACCACCGAAGAATATGTTCTTCTTAATCCCTACCCTCTTTATAACTCCCAAGAAAACAGCTTTTTCTTCTCGGAAATTAGGCCAGTTTTTCAAATATCGCCAAATTTTGTTTAGTTTTCTATCAGAAACCTGGAAACTAATAAATACCAAGAAAGAAAGAAAGAGAGAGAGAGAAACCACAAAAAAAAAAAGCAAAATTGTGTGAAAAAAGAGAGATAAAATCGAGGCCTGAAACATGGTTTGTTGTGTTTATGGAATATCAGTGAAGCCAAATGTTGTGGCTTTGCCTGTAGTATTTCGTCGTTCTAATTTTCAAGTAAGAGCTCAGAGTTTCAGAGATGAAGGAAGGTTCAGTGAGATGGTAGATGCCAATTTGGGAGTTTTAAGAGAGAGAATGGAAGAGGTGAAGATGAGAGAGAAATTAGAGAAATGTTTCAATAACACACACAAACATTATGGATGGAACTATGCAGCTTCATATGATTACAAAGTCAAAAAGACCAAACAATTTTCTAACTTTCTTCACTTCTTATTGGTAATTAGTGGTTCTCTAGGTTTTACATTTTTTACTGGTAGTTTTTCACTTTGTTTAATTTCTTTTATAGTTCATTTCAACCATTAAATTTAACAATAACAATTTCATTTGTTGATTCGTATCAATGTTTTTAGATTTGTTTGATCAATTTAGTGTATTATATTTTAGATTAGGGTAATTAGCTTTATCTTTTGTGTTTTGATTGTAAACTTACGTCTTATGGTAATGGAG

Coding sequence (CDS)

ATGGTTTGTTGTGTTTATGGAATATCAGTGAAGCCAAATGTTGTGGCTTTGCCTGTAGTATTTCGTCGTTCTAATTTTCAAGTAAGAGCTCAGAGTTTCAGAGATGAAGGAAGGTTCAGTGAGATGGTAGATGCCAATTTGGGAGTTTTAAGAGAGAGAATGGAAGAGGTGAAGATGAGAGAGAAATTAGAGAAATGTTTCAATAACACACACAAACATTATGGATGGAACTATGCAGCTTCATATGATTACAAAGTCAAAAAGACCAAACAATTTTCTAACTTTCTTCACTTCTTATTGGTAATTAGTGGTTCTCTAGGTTTTACATTTTTTACTGGTAGTTTTTCACTTTGTTTAATTTCTTTTATAGTTCATTTCAACCATTAA

Protein sequence

MVCCVYGISVKPNVVALPVVFRRSNFQVRAQSFRDEGRFSEMVDANLGVLRERMEEVKMREKLEKCFNNTHKHYGWNYAASYDYKVKKTKQFSNFLHFLLVISGSLGFTFFTGSFSLCLISFIVHFNH

Homology

[Close]

BLAST of Sed0013286 vs. NCBI nr
Match: KAG6579027.1 (hypothetical protein SDJN03_23475, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016550.1 hypothetical protein SDJN02_21659, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.1 bits (375), Expect = 2.7e-32
Identity = 78/138 (56.52%), Postives = 95/138 (68.84%), Query Frame = 0


Query: 2   VCCVYGISVKPNVVALPVVFRRSNFQVRAQSFRDE-----------GRFSEMVDANLGVL 61
           V CVY    KP VV    V  R   QVRAQ FR+E           GR  +MVDAN+GVL
Sbjct: 4   VSCVYAPLAKPCVVMAWPVLGRGRLQVRAQCFREEQGESFCDGGGAGRLGKMVDANMGVL 63

Query: 62  RERMEEVKMREKLEKCFNNTHKHYGWNYAASYDYKVKKTKQFSNFLHFLLVISGSLGFTF 121
           RERMEEVKMRE++E+C +     YGWNYA SYDYK+KK KQ + F+  L +ISGSLGFTF
Sbjct: 64  RERMEEVKMRERVERCLSYRQHEYGWNYAPSYDYKLKKDKQLAEFVQLLFLISGSLGFTF 123

Query: 122 FTGSFSLCLISFIVHFNH 129
            +G+FSLCL+SF++HF+H
Sbjct: 124 LSGTFSLCLLSFLLHFHH 141

[Close]

BLAST of Sed0013286 vs. NCBI nr
Match: XP_015881164.1 (uncharacterized protein LOC107417114 isoform X1 [Ziziphus jujuba] >XP_024929015.1 uncharacterized protein LOC107417114 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 109.4 bits (272), Expect = 2.4e-20
Identity = 59/102 (57.84%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 27  QVRAQSFRDEGRF-SEMVDANLGVLRERMEEVKMREKLEKCFNNTHKHYGWNYAASYDYK 86
           Q RAQSFRDE R+ S MVD N+ +LRERME V+ +EKLE+C        GWNY+  YDYK
Sbjct: 28  QARAQSFRDEERYSSNMVDENMKILRERMEVVRKKEKLERCCRG---QVGWNYSKCYDYK 87

Query: 87  VKKTKQFSNFLHFLLVISGSLGFTFFTGSFSLCLISFIVHFN 128
           VK+ KQ    +    VI GSLGFTFFTG   LCL+S +VHFN
Sbjct: 88  VKRDKQLVKMVEVAGVIGGSLGFTFFTGILFLCLVSLLVHFN 126

[Close]

BLAST of Sed0013286 vs. NCBI nr
Match: KAA8530622.1 (hypothetical protein F0562_005444 [Nyssa sinensis])

HSP 1 Score: 108.6 bits (270), Expect = 4.0e-20
Identity = 59/115 (51.30%), Postives = 78/115 (67.83%), Query Frame = 0


Query: 15  VALPVVFRRS--NFQVRAQSFRDEGRFSEMVDANLGVLRERMEEVKMREKLEKCFNNTHK 74
           V  P + R S  + QVRAQSFRDEGR    VDANL VLRER+EEV+M+E+LE+C  + + 
Sbjct: 11  VMAPSLKRNSPQSLQVRAQSFRDEGRSRNNVDANLSVLRERIEEVRMKERLERCCRSVN- 70

Query: 75  HYGWNYAASYDYKVKKTKQFSNFLHFLLVISGSLGFTFFTGSFSLCLISFIVHFN 128
             GWN  A Y+YK K+  + S F   L ++ G++G T  +G+FSLCLIS +VH N
Sbjct: 71  --GWNNPAGYNYKCKRGMELSQFSELLGLVGGTIGLTILSGTFSLCLISLLVHLN 122

[Close]

BLAST of Sed0013286 vs. NCBI nr
Match: MBA0847078.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 107.8 bits (268), Expect = 6.8e-20
Identity = 56/107 (52.34%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 21  FRRSNFQVRAQSFRDEGRFSEMVDANLGVLRERMEEVKMREKLEKCFNNTHKHYGWNYAA 80
           + R    VRAQSFRD G  S  VDANL VLRER+E+VKM+EKLE+C  +  K +GWNY A
Sbjct: 19  YSRQPIHVRAQSFRDGGGSSNRVDANLSVLRERIEQVKMKEKLERCCRSYDK-WGWNYGA 78

Query: 81  SYDYKVKKTKQFSNFLHFLLVISGSLGFTFFTGSFSLCLISFIVHFN 128
            Y+YKVK+ +Q S     L ++  +LGFT  TG   LC  SF +H N
Sbjct: 79  GYNYKVKRDRQLSELFELLSLVRATLGFTCLTGILFLCFFSFFLHLN 124

[Close]

BLAST of Sed0013286 vs. NCBI nr
Match: MBA0758210.1 (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-19
Identity = 56/107 (52.34%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 21  FRRSNFQVRAQSFRDEGRFSEMVDANLGVLRERMEEVKMREKLEKCFNNTHKHYGWNYAA 80
           + R    VRAQSFRD G  S  VDANL VLRER+E+VKM+EKLE+C  +  K +GWNY A
Sbjct: 19  YSRQPIHVRAQSFRDGGGSSNRVDANLSVLRERIEQVKMKEKLERCCRSYDK-WGWNYGA 78

Query: 81  SYDYKVKKTKQFSNFLHFLLVISGSLGFTFFTGSFSLCLISFIVHFN 128
           +Y+YKVK+  Q S     L ++  +LGFT  TG   LC  SF +H N
Sbjct: 79  AYNYKVKRDGQLSELFELLRLVGATLGFTCLTGILFLCFFSFFLHLN 124

[Close]

BLAST of Sed0013286 vs. ExPASy TrEMBL
Match: A0A6P6G5N4 (uncharacterized protein LOC107417114 isoform X1 OS=Ziziphus jujuba OX=326968 GN=LOC107417114 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-20
Identity = 59/102 (57.84%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 27  QVRAQSFRDEGRF-SEMVDANLGVLRERMEEVKMREKLEKCFNNTHKHYGWNYAASYDYK 86
           Q RAQSFRDE R+ S MVD N+ +LRERME V+ +EKLE+C        GWNY+  YDYK
Sbjct: 28  QARAQSFRDEERYSSNMVDENMKILRERMEVVRKKEKLERCCRG---QVGWNYSKCYDYK 87

Query: 87  VKKTKQFSNFLHFLLVISGSLGFTFFTGSFSLCLISFIVHFN 128
           VK+ KQ    +    VI GSLGFTFFTG   LCL+S +VHFN
Sbjct: 88  VKRDKQLVKMVEVAGVIGGSLGFTFFTGILFLCLVSLLVHFN 126

[Close]

BLAST of Sed0013286 vs. ExPASy TrEMBL
Match: A0A5J5ALC7 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_005444 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-20
Identity = 59/115 (51.30%), Postives = 78/115 (67.83%), Query Frame = 0


Query: 15  VALPVVFRRS--NFQVRAQSFRDEGRFSEMVDANLGVLRERMEEVKMREKLEKCFNNTHK 74
           V  P + R S  + QVRAQSFRDEGR    VDANL VLRER+EEV+M+E+LE+C  + + 
Sbjct: 11  VMAPSLKRNSPQSLQVRAQSFRDEGRSRNNVDANLSVLRERIEEVRMKERLERCCRSVN- 70

Query: 75  HYGWNYAASYDYKVKKTKQFSNFLHFLLVISGSLGFTFFTGSFSLCLISFIVHFN 128
             GWN  A Y+YK K+  + S F   L ++ G++G T  +G+FSLCLIS +VH N
Sbjct: 71  --GWNNPAGYNYKCKRGMELSQFSELLGLVGGTIGLTILSGTFSLCLISLLVHLN 122

[Close]

BLAST of Sed0013286 vs. ExPASy TrEMBL
Match: A0A7J9KKV9 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_012271 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.3e-20
Identity = 56/107 (52.34%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 21  FRRSNFQVRAQSFRDEGRFSEMVDANLGVLRERMEEVKMREKLEKCFNNTHKHYGWNYAA 80
           + R    VRAQSFRD G  S  VDANL VLRER+E+VKM+EKLE+C  +  K +GWNY A
Sbjct: 19  YSRQPIHVRAQSFRDGGGSSNRVDANLSVLRERIEQVKMKEKLERCCRSYDK-WGWNYGA 78

Query: 81  SYDYKVKKTKQFSNFLHFLLVISGSLGFTFFTGSFSLCLISFIVHFN 128
            Y+YKVK+ +Q S     L ++  +LGFT  TG   LC  SF +H N
Sbjct: 79  GYNYKVKRDRQLSELFELLSLVRATLGFTCLTGILFLCFFSFFLHLN 124

[Close]

BLAST of Sed0013286 vs. ExPASy TrEMBL
Match: A0A7J9DBW1 (Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_021227 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.7e-20
Identity = 56/107 (52.34%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 21  FRRSNFQVRAQSFRDEGRFSEMVDANLGVLRERMEEVKMREKLEKCFNNTHKHYGWNYAA 80
           + R    VRAQSFRD G  S  VDANL VLRER+E+VKM+EKLE+C  +  K +GWNY A
Sbjct: 19  YSRQPIHVRAQSFRDGGGSSNRVDANLSVLRERIEQVKMKEKLERCCRSYDK-WGWNYGA 78

Query: 81  SYDYKVKKTKQFSNFLHFLLVISGSLGFTFFTGSFSLCLISFIVHFN 128
           +Y+YKVK+  Q S     L ++  +LGFT  TG   LC  SF +H N
Sbjct: 79  AYNYKVKRDGQLSELFELLRLVGATLGFTCLTGILFLCFFSFFLHLN 124

[Close]

BLAST of Sed0013286 vs. ExPASy TrEMBL
Match: A0A5D2K945 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D07G211300v1 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.4e-20
Identity = 56/107 (52.34%), Postives = 69/107 (64.49%), Query Frame = 0


Query: 21  FRRSNFQVRAQSFRDEGRFSEMVDANLGVLRERMEEVKMREKLEKCFNNTHKHYGWNYAA 80
           + R    VRAQSFRD G  S  VDANL VLRER+E+VKM+EKLE+C  +  K +GWNY A
Sbjct: 19  YSRQPIHVRAQSFRDGGGSSNRVDANLSVLRERIEQVKMKEKLERCCRSYDK-WGWNYGA 78

Query: 81  SYDYKVKKTKQFSNFLHFLLVISGSLGFTFFTGSFSLCLISFIVHFN 128
            Y+YKVK+  Q S     L ++  +LGFT  TG   LC  SF +H N
Sbjct: 79  GYNYKVKRDGQLSELFELLSLVGATLGFTCLTGILFLCFFSFFLHLN 124

The following BLAST results are available for this feature:

BLAST of Sed0013286 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579027.1	2.7e-32	56.52	hypothetical protein SDJN03_23475, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_015881164.1	2.4e-20	57.84	uncharacterized protein LOC107417114 isoform X1 [Ziziphus jujuba] >XP_024929015....	[more]
KAA8530622.1	4.0e-20	51.30	hypothetical protein F0562_005444 [Nyssa sinensis]	[more]
MBA0847078.1	6.8e-20	52.34	hypothetical protein [Gossypium schwendimanii]	[more]
MBA0758210.1	1.2e-19	52.34	hypothetical protein [Gossypium trilobum]	[more]

BLAST of Sed0013286 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0013286 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P6G5N4	1.1e-20	57.84	uncharacterized protein LOC107417114 isoform X1 OS=Ziziphus jujuba OX=326968 GN=...	[more]
A0A5J5ALC7	1.9e-20	51.30	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_005444 PE=4 SV=1	[more]
A0A7J9KKV9	3.3e-20	52.34	Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_012271 PE=4...	[more]
A0A7J9DBW1	5.7e-20	52.34	Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_021227 PE=4 SV=1	[more]
A0A5D2K945	7.4e-20	52.34	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D07G211300v1 P...	[more]

BLAST of Sed0013286 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38225	PROTEIN, PUTATIVE-RELATED	coord: 23..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013286.1	Sed0013286.1	mRNA