Sed0013202 (gene) Chayote v1

Overview


Name	Sed0013202
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG02: 35382255 .. 35383399 (+)
RNA-Seq Expression	Sed0013202
Synteny	Sed0013202

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGCGCGGCGCAAGGGAAATTCAATACCGATGATGTTAAATTGGGAAAGTGACGACCAACCTAAGCGGAAAGATCTGCAGAGATTGGTGCTTGAGAACAAAAGGGTATGTTATTTACTTCAAACTAATTAAATATTGATTACTGATGCATACAATTCAAGTTTATATAATGGTGATATGGATTTTGTTCTTCGGAACAGTTCAAGTTTATAATGCTGGGTAATGGTGAGGAGAATTATGGGAACAATGTGGTTGAAGACAAATCGAAGGGAGATGTTGATGCAGAATCTGTAAGTATTGTCTTTTCATCTTCTATGTTCTGTTTATCATACCGTCTGTTATTATGCGATATGTATGTTCTAAACGGAGTTGAATTAGTATGGTGTGTACTATACCGTAAGGTGATGCAAACCTTTATGTACTGTATGTTATTAACTGTTTGTAGTATACTATACTGATTCGTGTTTCAATCCATTCTGTAGGATAAAGAAGTTGACGAGGGAGAATCCTCAGATTTTGACAAATGGTTTGACAATGTGGTAGAAGAGACTTATGAAGAGATAAAAAAAATGGAACAAACCATAAAAGCTGCCAATACAACGATGGTAGATTATATTGGGCCTGAGGAAGCTGTTATTGAAAAGGTAGTTTCTGGACAAGTCGAACCAAATGTAGGTTCGAGGGAAAATCCAAGTATTAACGACACCTACACCAACACAACTGAAATTATAGAGTATTTGAAAGCGTCCTTTGAGGGTATTAACAAACGGATGGATGAGATGAGGGTAGAGACTAGTAAAAAGTTTGAGGAGATGTGGAGTGTGTTGAACGAGATTGCGAGTGATGTAAAAGGATTGAAAGCAAAAAGTAATGATGTTGAAGATTTGGGGGATAAGGTTAACATCGAGGATGAAGATGATGATGGGGGGGATGGTGTAAATGATGGGTATGGTAAAGATAGGAATACAGGGAACGAAGATCTTCAGAAGGAAGCTAGGTCTGAACTTGACGATGTTGATGCTGGAGTGAGTAAAGAAAATGCTGGAAATGAGGTAAATGATTTAATGTTATACCTGATAGATGTAGGTGATTTTTGCAATGCTTTGGACAATAATCTTTATGTTGATGCAGTAATTAATTAA

mRNA sequence

ATGTTCGCGCGGCGCAAGGGAAATTCAATACCGATGATGTTAAATTGGGAAAGTGACGACCAACCTAAGCGGAAAGATCTGCAGAGATTGGTGCTTGAGAACAAAAGGTTCAAGTTTATAATGCTGGGTAATGGTGAGGAGAATTATGGGAACAATGTGGTTGAAGACAAATCGAAGGGAGATGTTGATGCAGAATCTGATAAAGAAGTTGACGAGGGAGAATCCTCAGATTTTGACAAATGGTTTGACAATGTGGTAGAAGAGACTTATGAAGAGATAAAAAAAATGGAACAAACCATAAAAGCTGCCAATACAACGATGGTAGATTATATTGGGCCTGAGGAAGCTGTTATTGAAAAGGTAGTTTCTGGACAAGTCGAACCAAATGTAGGTTCGAGGGAAAATCCAAGTATTAACGACACCTACACCAACACAACTGAAATTATAGAGTATTTGAAAGCGTCCTTTGAGGGTATTAACAAACGGATGGATGAGATGAGGGTAGAGACTAGTAAAAAGTTTGAGGAGATGTGGAGTGTGTTGAACGAGATTGCGAGTGATGTAAAAGGATTGAAAGCAAAAAGTAATGATGTTGAAGATTTGGGGGATAAGGTTAACATCGAGGATGAAGATGATGATGGGGGGGATGGTGTAAATGATGGGTATGGTAAAGATAGGAATACAGGGAACGAAGATCTTCAGAAGGAAGCTAGGTCTGAACTTGACGATGTTGATGCTGGAGTGAGTAAAGAAAATGCTGGAAATGAGGTAAATGATTTAATGTTATACCTGATAGATGTAGGTGATTTTTGCAATGCTTTGGACAATAATCTTTATGTTGATGCAGTAATTAATTAA

Coding sequence (CDS)

ATGTTCGCGCGGCGCAAGGGAAATTCAATACCGATGATGTTAAATTGGGAAAGTGACGACCAACCTAAGCGGAAAGATCTGCAGAGATTGGTGCTTGAGAACAAAAGGTTCAAGTTTATAATGCTGGGTAATGGTGAGGAGAATTATGGGAACAATGTGGTTGAAGACAAATCGAAGGGAGATGTTGATGCAGAATCTGATAAAGAAGTTGACGAGGGAGAATCCTCAGATTTTGACAAATGGTTTGACAATGTGGTAGAAGAGACTTATGAAGAGATAAAAAAAATGGAACAAACCATAAAAGCTGCCAATACAACGATGGTAGATTATATTGGGCCTGAGGAAGCTGTTATTGAAAAGGTAGTTTCTGGACAAGTCGAACCAAATGTAGGTTCGAGGGAAAATCCAAGTATTAACGACACCTACACCAACACAACTGAAATTATAGAGTATTTGAAAGCGTCCTTTGAGGGTATTAACAAACGGATGGATGAGATGAGGGTAGAGACTAGTAAAAAGTTTGAGGAGATGTGGAGTGTGTTGAACGAGATTGCGAGTGATGTAAAAGGATTGAAAGCAAAAAGTAATGATGTTGAAGATTTGGGGGATAAGGTTAACATCGAGGATGAAGATGATGATGGGGGGGATGGTGTAAATGATGGGTATGGTAAAGATAGGAATACAGGGAACGAAGATCTTCAGAAGGAAGCTAGGTCTGAACTTGACGATGTTGATGCTGGAGTGAGTAAAGAAAATGCTGGAAATGAGGTAAATGATTTAATGTTATACCTGATAGATGTAGGTGATTTTTGCAATGCTTTGGACAATAATCTTTATGTTGATGCAGTAATTAATTAA

Protein sequence

MFARRKGNSIPMMLNWESDDQPKRKDLQRLVLENKRFKFIMLGNGEENYGNNVVEDKSKGDVDAESDKEVDEGESSDFDKWFDNVVEETYEEIKKMEQTIKAANTTMVDYIGPEEAVIEKVVSGQVEPNVGSRENPSINDTYTNTTEIIEYLKASFEGINKRMDEMRVETSKKFEEMWSVLNEIASDVKGLKAKSNDVEDLGDKVNIEDEDDDGGDGVNDGYGKDRNTGNEDLQKEARSELDDVDAGVSKENAGNEVNDLMLYLIDVGDFCNALDNNLYVDAVIN

Homology

The following BLAST results are available for this feature:

BLAST of Sed0013202 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0013202 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0013202 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0013202 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 86..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013202.1	Sed0013202.1	mRNA