Sed0012877 (gene) Chayote v1

Overview
NameSed0012877
Typegene
OrganismSechium edule (Chayote v1)
DescriptionComplex 1 LYR protein
LocationLG12: 4454489 .. 4457068 (-)
RNA-Seq ExpressionSed0012877
SyntenySed0012877
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAAACTAGTTTATAACCGAATTATGTCGTGCGCCACTGGGTTCATTTATTCCTAATCAATAGTGATTCTTCAAATCAAATTGAGGAGCTTCCTTGTTTATTTTTGTTCATCATTTTCCCTATTTTTCTGCAAAGCGCTCTACAAAGCCACGAGGAGGAATCGCAGGTGTAAGGTAATCATCGGATCTTTTTCATTTCTAGTGTTTCTGTTTCTAATTTCTTGCTTTTCAATGCGTTGATGGTGGTTTTGGGTTAATCGCATTTACGATTGGATGTGCGCTGAAGCTGAGACGTATAGAAAATTAGGGTTTTATTTGTGGAATGATCGACTTTTAGCTCCCATAATGATTTGCGATGTTAGCTCGCCTCTATTTCGGCGACTGAAAACGAGGAGCAGAGATTAATGAGATAAATCCCTTCATGATAGCATGAGATTGGAGCGGTTGGGCGTGTCAGTTCATTGTTCCTGTTTTTTTTTCAATATCATATATGTTTTTCTGTGTGGATCATGCTTCAATTGTCTACAATTTGTGCCCACTTTTTCAAAGAAACTTCCAAGCCAGACGATGTTTGTTCATAAGGGGATGTTTGGGAGAAGGGGAATGAGAATTAGGGGGAGAATAGGAAAGGGTATGATTATGGGGAGAATGATTAATGTGTTTGGGATTAAGAGAATAATTATGGGGAAAATTATTATTTGTGTTTGGAGTGAAAAGAGTGATTATGAGAAAAATATAGTAATGAGTATAATGAGAGTGAAAAATAGTGATGTGATGTATAAAAATTGTTGTGGGGCAGAATAAAAGGTAGCTAGGGTGAGAATGAAAAAGGTGATTTTGGAAAAGCCCAATTATGGGGGAAATGATCACCGGTGGGCCAAACATGGGAAATCATTGTCATTCCATTCTACACACCCTAAAACTCCTTTCATCTTTTCTATGATCTACAGTTTGATTGATGTGTTGCTTTTTCCATTTGATCCATAGTGTGAAAAGGGTGGAAATGCCATCTTTACAGACTGCTCTTCCTCCTGAGCTTGCCAATAATGTCATTAGGGTTGGTTCCCTCATATCCTATCCTTTTTCAAATACAATTTTCTCCACAAACTTTGTTTAACATTTCATGTTTCGTCACTGCAGCTGTACCGCGAATGCCTTAGAAGAGCTAAGTTTATAGGTTATCAGGTATGGATGTACTCTTCATTTGTTTTTTAAACTAAACAACCGCTGTTATGGTTCTAGTGATCTTGCATTTCAATAACTTAGAGTGGTTAGTGAGTCAATGAGCAGTGGAAAGTTCGAGTTTATTACAGCTTTCAACACATTTAGACACCCTGTTTTTCTTACACATTCTTGCTATGTAAATATTGTAGTTTTTATCTGTTTCAATAAAAAAAATTGTGCCCACATTTCAAATTAGTTGTTTCCAATTATTGGAAGGCTTAAAGCATTAGAGTCGACATAACGTCCATGAGTAGGAGGTCATCATGAGTTCGAATGAGTTCGAGTTCCCCATCTCAATTATTGTTGAACTCAAAAAAATCTACCTTTTACAGCAACATAACACCGATCTTGTTGTGAGTATGGTGAGACAACAATTCAGAAAGAATATGCATGAGACTGATCCAGAGAAGATTCAGAAGATGAAAGATGAGTACGTCTCAAGATTTTGCTTCTTGTTTCTTTCGATCCCTTTTTCCCTGATCTCTTTTGCAGAAGAAAATATATGTTTAAATGAAATATGTACGAGAATCAAGTAAAAAGGCATCCTCTCAGACCCAAAGGATAAAATAGATTAAGTTGTTTTTTTCTTTTTGATATTTGTGATTGTCAAGCCAGCTTGCATACACTTCAACTATTGTCACGTGAAATAGACATACCATCTGACCCTAAACATTTGAATGTCAAAAAAATTGGTAGGAAATTTGGTCATGGATTGAACTCATTTTTTCTTAGTTCCCCAAAAGTGTCTTGACCACTAGGTCACTCCATAGTTTAGATTAAATTATATTTTGTTTTCTGGTTAGAACTTTGTGGGCAAGGCATTCATATTTTTGTGTATACTGCTTGTTTGCAGTGCGGCAAGGGGACTCATAAACCATATTCTACATGAATCTGAGAGAATGTCAGGTCGAAAATTCAGCCAAAGTTCTTGATGTTATTAAGAATGATATCAAGTATAAGGTCTCGCCATTGAAACTTCAGATATTGTAGGGGAATAAGATGGCTGATGATGAAATTACTTCTGGGAGGTTATTTTTGCTTTTCCTTGCATATTTATCTTCAGCAATTGTCTTAAACTATTCCCTTTCTACGATTTGCTCAAGGAAATCATGCATTTTTCAGTTAACTGTTGAACTTCTCCCTATCTAAAATCTGCACTTGATCATGAACAAAGTGGATTTTTTTAGAAAGATATGAGACACATACTTGACCAACTCTTTAAGTCTTTATGGGCTTTTCTTTTAATTCTAGATATTACTTAACCTGAGGATATTCAGGTATGTGAATCATGAGGGCATTTTGATATGGTGCTCATGATGCGGTAATTGTTTTCTTTTAATAAGAAATAATTCGGAC

mRNA sequence

ATTAAACTAGTTTATAACCGAATTATGTCGTGCGCCACTGGGTTCATTTATTCCTAATCAATAGTGATTCTTCAAATCAAATTGAGGAGCTTCCTTGTTTATTTTTGTTCATCATTTTCCCTATTTTTCTGCAAAGCGCTCTACAAAGCCACGAGGAGGAATCGCAGGTGTAAGTGTGAAAAGGGTGGAAATGCCATCTTTACAGACTGCTCTTCCTCCTGAGCTTGCCAATAATGTCATTAGGCTGTACCGCGAATGCCTTAGAAGAGCTAAGTTTATAGGTTATCAGCAACATAACACCGATCTTGTTGTGAGTATGGTGAGACAACAATTCAGAAAGAATATGCATGAGACTGATCCAGAGAAGATTCAGAAGATGAAAGATGATGCGGCAAGGGGACTCATAAACCATATTCTACATGAATCTGAGAGAATGTCAGGTCGAAAATTCAGCCAAAGTTCTTGATGTTATTAAGAATGATATCAAGTATAAGGTCTCGCCATTGAAACTTCAGATATTGTAGGGGAATAAGATGGCTGATGATGAAATTACTTCTGGGAGGTTATTTTTGCTTTTCCTTGCATATTTATCTTCAGCAATTGTCTTAAACTATTCCCTTTCTACGATTTGCTCAAGGAAATCATGCATTTTTCAGTTAACTGTTGAACTTCTCCCTATCTAAAATCTGCACTTGATCATGAACAAAGTGGATTTTTTTAGAAAGATATGAGACACATACTTGACCAACTCTTTAAGTCTTTATGGGCTTTTCTTTTAATTCTAGATATTACTTAACCTGAGGATATTCAGGTATGTGAATCATGAGGGCATTTTGATATGGTGCTCATGATGCGGTAATTGTTTTCTTTTAATAAGAAATAATTCGGAC

Coding sequence (CDS)

ATGCCATCTTTACAGACTGCTCTTCCTCCTGAGCTTGCCAATAATGTCATTAGGCTGTACCGCGAATGCCTTAGAAGAGCTAAGTTTATAGGTTATCAGCAACATAACACCGATCTTGTTGTGAGTATGGTGAGACAACAATTCAGAAAGAATATGCATGAGACTGATCCAGAGAAGATTCAGAAGATGAAAGATGATGCGGCAAGGGGACTCATAAACCATATTCTACATGAATCTGAGAGAATGTCAGGTCGAAAATTCAGCCAAAGTTCTTGA

Protein sequence

MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS
Homology
BLAST of Sed0012877 vs. NCBI nr
Match: XP_022138283.1 (uncharacterized protein LOC111009499 [Momordica charantia] >XP_022138284.1 uncharacterized protein LOC111009499 [Momordica charantia])

HSP 1 Score: 173.7 bits (439), Expect = 7.2e-40
Identity = 85/91 (93.41%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAK+IG+QQHNT+LVVSMVRQQFRKNMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKI 60

Query: 61 QKMKDDAARGLINHILHESERMSGRKFSQSS 92
          QK+KDDAARGLINHIL+ESER+SGRKFSQSS
Sbjct: 61 QKLKDDAARGLINHILYESERLSGRKFSQSS 91

BLAST of Sed0012877 vs. NCBI nr
Match: XP_038878962.1 (uncharacterized protein LOC120071039 [Benincasa hispida] >XP_038878971.1 uncharacterized protein LOC120071039 [Benincasa hispida])

HSP 1 Score: 170.6 bits (431), Expect = 6.1e-39
Identity = 84/91 (92.31%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAK+IG+QQHNT+L+VSMVRQQFRKNM ETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELLVSMVRQQFRKNMRETDPEKI 60

Query: 61 QKMKDDAARGLINHILHESERMSGRKFSQSS 92
          QK+KDDAARGLINHIL+ESERMSGRKFSQSS
Sbjct: 61 QKLKDDAARGLINHILYESERMSGRKFSQSS 91

BLAST of Sed0012877 vs. NCBI nr
Match: XP_022964695.1 (uncharacterized protein LOC111464671 [Cucurbita moschata])

HSP 1 Score: 170.2 bits (430), Expect = 8.0e-39
Identity = 83/91 (91.21%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKFIG++QHNTDLVVSMV+QQFRKNMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKFIGHRQHNTDLVVSMVKQQFRKNMHETDPEKI 60

Query: 61 QKMKDDAARGLINHILHESERMSGRKFSQSS 92
          QK+KDDAARGLINHIL+ESER++GRK SQSS
Sbjct: 61 QKLKDDAARGLINHILYESERLTGRKLSQSS 91

BLAST of Sed0012877 vs. NCBI nr
Match: XP_022972196.1 (uncharacterized protein LOC111470803 [Cucurbita maxima] >XP_023540322.1 uncharacterized protein LOC111800735 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.1 bits (427), Expect = 1.8e-38
Identity = 82/91 (90.11%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAK+IG++QHNTDLVVSMV+QQFRKNMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHRQHNTDLVVSMVKQQFRKNMHETDPEKI 60

Query: 61 QKMKDDAARGLINHILHESERMSGRKFSQSS 92
          QK+KDDAARGLINHIL+ESER++GRK SQSS
Sbjct: 61 QKLKDDAARGLINHILYESERLTGRKLSQSS 91

BLAST of Sed0012877 vs. NCBI nr
Match: XP_004147626.1 (uncharacterized protein LOC101203751 [Cucumis sativus] >XP_011651093.1 uncharacterized protein LOC101203751 [Cucumis sativus] >KAE8650410.1 hypothetical protein Csa_010313 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 5.2e-38
Identity = 80/91 (87.91%), Postives = 89/91 (97.80%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKF+G++QHNT+L+V MVRQQF+KNMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60

Query: 61 QKMKDDAARGLINHILHESERMSGRKFSQSS 92
          QKMKDDAARGLINH+L+E ERMSG+KFSQSS
Sbjct: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 91

BLAST of Sed0012877 vs. ExPASy TrEMBL
Match: A0A6J1C9Q7 (uncharacterized protein LOC111009499 OS=Momordica charantia OX=3673 GN=LOC111009499 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.5e-40
Identity = 85/91 (93.41%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAK+IG+QQHNT+LVVSMVRQQFRKNMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKI 60

Query: 61 QKMKDDAARGLINHILHESERMSGRKFSQSS 92
          QK+KDDAARGLINHIL+ESER+SGRKFSQSS
Sbjct: 61 QKLKDDAARGLINHILYESERLSGRKFSQSS 91

BLAST of Sed0012877 vs. ExPASy TrEMBL
Match: A0A6J1HLJ6 (uncharacterized protein LOC111464671 OS=Cucurbita moschata OX=3662 GN=LOC111464671 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.9e-39
Identity = 83/91 (91.21%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKFIG++QHNTDLVVSMV+QQFRKNMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKFIGHRQHNTDLVVSMVKQQFRKNMHETDPEKI 60

Query: 61 QKMKDDAARGLINHILHESERMSGRKFSQSS 92
          QK+KDDAARGLINHIL+ESER++GRK SQSS
Sbjct: 61 QKLKDDAARGLINHILYESERLTGRKLSQSS 91

BLAST of Sed0012877 vs. ExPASy TrEMBL
Match: A0A6J1I5B4 (uncharacterized protein LOC111470803 OS=Cucurbita maxima OX=3661 GN=LOC111470803 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.6e-39
Identity = 82/91 (90.11%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAK+IG++QHNTDLVVSMV+QQFRKNMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHRQHNTDLVVSMVKQQFRKNMHETDPEKI 60

Query: 61 QKMKDDAARGLINHILHESERMSGRKFSQSS 92
          QK+KDDAARGLINHIL+ESER++GRK SQSS
Sbjct: 61 QKLKDDAARGLINHILYESERLTGRKLSQSS 91

BLAST of Sed0012877 vs. ExPASy TrEMBL
Match: A0A1U8AWB6 (uncharacterized protein LOC104607091 isoform X2 OS=Nelumbo nucifera OX=4432 GN=LOC104607091 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.5e-38
Identity = 80/91 (87.91%), Postives = 89/91 (97.80%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRA+FIG++QHNT+LVV MVRQQF+K+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRARFIGHRQHNTELVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDDAARGLINHILHESERMSGRKFSQSS 92
          QK+KDDAARGLINHIL+ESE+MSGRKFS SS
Sbjct: 61 QKLKDDAARGLINHILYESEKMSGRKFSSSS 91

BLAST of Sed0012877 vs. ExPASy TrEMBL
Match: D7T656 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g00430 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37
Identity = 79/91 (86.81%), Postives = 89/91 (97.80%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRA++IG+QQHNT+LVV MVRQQF+K+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRARYIGHQQHNTELVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDDAARGLINHILHESERMSGRKFSQSS 92
          QK+KDDAARGLINHIL+ESE+MSGRKFS+ S
Sbjct: 61 QKLKDDAARGLINHILYESEKMSGRKFSKKS 91

BLAST of Sed0012877 vs. TAIR 10
Match: AT3G17300.1 (unknown protein; Has 48 Blast hits to 48 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). )

HSP 1 Score: 150.2 bits (378), Expect = 8.0e-37
Identity = 73/91 (80.22%), Postives = 84/91 (92.31%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFIGYQQHNTDLVVSMVRQQFRKNMHETDPEKI 60
          MPSLQT+LPPELANNV+RLYRECLRRAKFIG QQHNT+LVV MVRQQF+K+M+ETDPEKI
Sbjct: 1  MPSLQTSLPPELANNVVRLYRECLRRAKFIGKQQHNTELVVGMVRQQFKKHMNETDPEKI 60

Query: 61 QKMKDDAARGLINHILHESERMSGRKFSQSS 92
          QK+KDDAARGLINH+L ES +++G K SQ S
Sbjct: 61 QKLKDDAARGLINHMLFESAKLTGGKVSQRS 91

BLAST of Sed0012877 vs. TAIR 10
Match: AT3G17300.2 (unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35 Blast hits to 35 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-18
Identity = 43/58 (74.14%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 34 QHNTDLVVSMVRQQFRKNMHETDPEKIQKMKDDAARGLINHILHESERMSGRKFSQSS 92
          QHNT+LVV MVRQQF+K+M+ETDPEKIQK+KDDAARGLINH+L ES +++G K SQ S
Sbjct: 17 QHNTELVVGMVRQQFKKHMNETDPEKIQKLKDDAARGLINHMLFESAKLTGGKVSQRS 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022138283.17.2e-4093.41uncharacterized protein LOC111009499 [Momordica charantia] >XP_022138284.1 uncha... [more]
XP_038878962.16.1e-3992.31uncharacterized protein LOC120071039 [Benincasa hispida] >XP_038878971.1 unchara... [more]
XP_022964695.18.0e-3991.21uncharacterized protein LOC111464671 [Cucurbita moschata][more]
XP_022972196.11.8e-3890.11uncharacterized protein LOC111470803 [Cucurbita maxima] >XP_023540322.1 uncharac... [more]
XP_004147626.15.2e-3887.91uncharacterized protein LOC101203751 [Cucumis sativus] >XP_011651093.1 uncharact... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C9Q73.5e-4093.41uncharacterized protein LOC111009499 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A6J1HLJ63.9e-3991.21uncharacterized protein LOC111464671 OS=Cucurbita moschata OX=3662 GN=LOC1114646... [more]
A0A6J1I5B48.6e-3990.11uncharacterized protein LOC111470803 OS=Cucurbita maxima OX=3661 GN=LOC111470803... [more]
A0A1U8AWB69.5e-3887.91uncharacterized protein LOC104607091 isoform X2 OS=Nelumbo nucifera OX=4432 GN=L... [more]
D7T6561.6e-3786.81Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g00430 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT3G17300.18.0e-3780.22unknown protein; Has 48 Blast hits to 48 proteins in 21 species: Archae - 0; Bac... [more]
AT3G17300.22.2e-1874.14unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth ... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 16..67
e-value: 9.2E-12
score: 44.8
NoneNo IPR availablePANTHERPTHR47579COMPLEX 1 LYR PROTEINcoord: 1..91
NoneNo IPR availableCDDcd20251Complex1_LYR_SFcoord: 16..73
e-value: 2.29987E-19
score: 72.1925

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0012877.1Sed0012877.1mRNA