Sed0012715 (gene) Chayote v1

Overview
NameSed0012715
Typegene
OrganismSechium edule (Chayote v1)
Descriptionxylem cysteine peptidase 1
LocationLG07: 4971556 .. 4972564 (-)
RNA-Seq ExpressionSed0012715
SyntenySed0012715
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAATACAAATGTAAAAAAATGAGATGTGCAAAGGAGGATGATTTTAATTGAAAATGATTTTGTATATTTAAAAATAAATTTGAGATTTGAATAGATTTGTAAATAAGGTTCCTATTGAGAGTAATTCGTCAATTAAATTGCACGCATTTTGGAAATAAAAAACCCTCCTTTTCCTTGAAGGAACCATCAAGATTTTCCATATATATATATATGTATGATGCAAAAGAAAAAAGAACCCTACGCAGTAAAATGGCCGGACGCATGGCTGTGGGACGATGTTTTGGATCACCTAATAATTGGTTTGGGTTCATACGGAATCTACACTATGGCCGCTCCAAGAGGCCTCTCAGGGTTTTTCTTCTTCTTCTTTACACGTTGAACACTCAATTCCTTTGTTTCAAAAGAATAATGTTATTAATATTATTCTGTTTCAAATGGCAGATTTACAGCTTTGATCCAACGGAGCCTGCCGAGTTAGGAGAAGTAAGCTGTGTTATGCCTTTTTAAATTAGCTAAATTATGTGCAGAGGGTTTTGAAATTTGTTAATTATTTGTTGAATAATGATAATTTTATACATTAGATGGCTAAAGCAGAATCTTCCGAGTACTGGGAGTCTTTCATGTCATGGAGATCCATACGCCATAAGCATTATGTGGGCGAGAAAGAGATTCTATATAGGTTTGAGATATTCTGTGAAACTATGAAATCCATTGAGTATTGGAACAGCAAGGCTGGACCTGGACCCAATGCTGCTCGTTTTGGGTTGAATGAATTCTCAGACCTCACTTGGGAAGAGTCGCCCTTTGGTTGTCCTTTGAAGAATTATAGCGAGGATGATGAGGGTAATTTGAGTGACTTTGAGATCATTGATTCAGAAGATTTTTCTACTGAAGTTGAGTCTGATCCAGATGATTATACTACCGTCTGCGAGTTTACCGACTCCGACCTCGAGGAGAAGTCGGAGACGCCCGATGAACTTCAACCACCAAAAGAAAACTTTTAA

mRNA sequence

ATGCAAAATACAAATATTTACAGCTTTGATCCAACGGAGCCTGCCGAGTTAGGAGAAATGGCTAAAGCAGAATCTTCCGAGTACTGGGAGTCTTTCATGTCATGGAGATCCATACGCCATAAGCATTATGTGGGCGAGAAAGAGATTCTATATAGGTTTGAGATATTCTGTGAAACTATGAAATCCATTGAGTATTGGAACAGCAAGGCTGGACCTGGACCCAATGCTGCTCGTTTTGGGTTGAATGAATTCTCAGACCTCACTTGGGAAGAGTCGCCCTTTGGTTGTCCTTTGAAGAATTATAGCGAGGATGATGAGGGTAATTTGAGTGACTTTGAGATCATTGATTCAGAAGATTTTTCTACTGAAGTTGAGTCTGATCCAGATGATTATACTACCGTCTGCGAGTTTACCGACTCCGACCTCGAGGAGAAGTCGGAGACGCCCGATGAACTTCAACCACCAAAAGAAAACTTTTAA

Coding sequence (CDS)

ATGCAAAATACAAATATTTACAGCTTTGATCCAACGGAGCCTGCCGAGTTAGGAGAAATGGCTAAAGCAGAATCTTCCGAGTACTGGGAGTCTTTCATGTCATGGAGATCCATACGCCATAAGCATTATGTGGGCGAGAAAGAGATTCTATATAGGTTTGAGATATTCTGTGAAACTATGAAATCCATTGAGTATTGGAACAGCAAGGCTGGACCTGGACCCAATGCTGCTCGTTTTGGGTTGAATGAATTCTCAGACCTCACTTGGGAAGAGTCGCCCTTTGGTTGTCCTTTGAAGAATTATAGCGAGGATGATGAGGGTAATTTGAGTGACTTTGAGATCATTGATTCAGAAGATTTTTCTACTGAAGTTGAGTCTGATCCAGATGATTATACTACCGTCTGCGAGTTTACCGACTCCGACCTCGAGGAGAAGTCGGAGACGCCCGATGAACTTCAACCACCAAAAGAAAACTTTTAA

Protein sequence

MQNTNIYSFDPTEPAELGEMAKAESSEYWESFMSWRSIRHKHYVGEKEILYRFEIFCETMKSIEYWNSKAGPGPNAARFGLNEFSDLTWEESPFGCPLKNYSEDDEGNLSDFEIIDSEDFSTEVESDPDDYTTVCEFTDSDLEEKSETPDELQPPKENF
Homology
BLAST of Sed0012715 vs. NCBI nr
Match: XP_038887495.1 (pro-cathepsin H-like [Benincasa hispida])

HSP 1 Score: 68.6 bits (166), Expect = 5.7e-08
Identity = 41/103 (39.81%), Postives = 53/103 (51.46%), Query Frame = 0

Query: 1   MQNTNIYSFDPTEPAELGEMAKAESSEYWESFMSWRSIRHKHYVGEKEILYRFEIFCETM 60
           + N N +  D  E      +  A  SE WESF SW S+ +K Y  E+E+LYRF +F +T+
Sbjct: 36  LTNINQFKSDGVE-----SIYDAVLSEDWESFKSWMSMHNKKYGSEEEMLYRFGLFKKTL 95

Query: 61  KSIEYWNSKAGPGPNAARFGLNEFSDLTWEESPFGCPLKNYSE 104
           K IE    K         FG N FSDLT++E P G    N  E
Sbjct: 96  KRIE----KLNKNYTGCTFGFNHFSDLTFDEVPKGYTSSNGME 129

BLAST of Sed0012715 vs. NCBI nr
Match: KAE8650303.1 (hypothetical protein Csa_010836 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-04
Identity = 34/86 (39.53%), Postives = 46/86 (53.49%), Query Frame = 0

Query: 6   IYSFDPTEPAELGEMAKAESSEYWESFMSWRSIRHKHYVGEKEILYRFEIFCETMKSIEY 65
           IY+F   +    G +  AE S+ W+ F SW S   K Y  ++E LYRF IF   +K I+ 
Sbjct: 143 IYTFSVCK----GLLEDAERSKDWKKFASWMSEHKKKYESDEEKLYRFGIFRGELKHIKK 202

Query: 66  WNSKAGPGPNAARFGLNEFSDLTWEE 92
            N +     N   FGLN++SDLT  E
Sbjct: 203 LNKE----DNGCTFGLNQYSDLTNSE 220

BLAST of Sed0012715 vs. NCBI nr
Match: XP_015791309.1 (cathepsin L1 [Tetranychus urticae])

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-04
Identity = 27/72 (37.50%), Postives = 42/72 (58.33%), Query Frame = 0

Query: 20 MAKAESSEYWESFMSWRSIRHKHYVGEKEILYRFEIFCETMKSIEYWNSKAGPGPNAARF 79
          +A A S  Y   + S+++  HK Y GE E  +R  +F   +K I+  N +A  G +  R 
Sbjct: 13 LAAAASLSYENEWESFKAKHHKVYAGESEEAWRKSVFLNNLKKIKAHNERADNGEHTYRL 72

Query: 80 GLNEFSDLTWEE 92
          G+N+F+DLT+EE
Sbjct: 73 GVNKFADLTFEE 84

BLAST of Sed0012715 vs. ExPASy Swiss-Prot
Match: O65493 (Cysteine protease XCP1 OS=Arabidopsis thaliana OX=3702 GN=XCP1 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.3e-04
Identity = 26/62 (41.94%), Postives = 36/62 (58.06%), Query Frame = 0

Query: 30  ESFMSWRSIRHKHYVGEKEILYRFEIFCETMKSIEYWNSKAGPGPNAARFGLNEFSDLTW 89
           E F SW S   K Y   +E ++RFE+F E +  I+  N++     N+   GLNEF+DLT 
Sbjct: 49  ELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEI----NSYWLGLNEFADLTH 106

Query: 90  EE 92
           EE
Sbjct: 109 EE 106

BLAST of Sed0012715 vs. ExPASy Swiss-Prot
Match: P05994 (Papaya proteinase 4 OS=Carica papaya OX=3649 PE=1 SV=3)

HSP 1 Score: 45.1 bits (105), Expect = 8.9e-04
Identity = 26/60 (43.33%), Postives = 33/60 (55.00%), Query Frame = 0

Query: 32  FMSWRSIRHKHYVGEKEILYRFEIFCETMKSIEYWNSKAGPGPNAARFGLNEFSDLTWEE 91
           F SW    +K+Y    E LYRFEIF + +K I+  N       N    GLNEFSDL+ +E
Sbjct: 48  FNSWMLKHNKNYKNVDEKLYRFEIFKDNLKYIDERNKMI----NGYWLGLNEFSDLSNDE 103

BLAST of Sed0012715 vs. ExPASy TrEMBL
Match: T1KX03 (Uncharacterized protein OS=Tetranychus urticae OX=32264 GN=107368042 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 27/72 (37.50%), Postives = 42/72 (58.33%), Query Frame = 0

Query: 20 MAKAESSEYWESFMSWRSIRHKHYVGEKEILYRFEIFCETMKSIEYWNSKAGPGPNAARF 79
          +A A S  Y   + S+++  HK Y GE E  +R  +F   +K I+  N +A  G +  R 
Sbjct: 13 LAAAASLSYENEWESFKAKHHKVYAGESEEAWRKSVFLNNLKKIKAHNERADNGEHTYRL 72

Query: 80 GLNEFSDLTWEE 92
          G+N+F+DLT+EE
Sbjct: 73 GVNKFADLTFEE 84

BLAST of Sed0012715 vs. ExPASy TrEMBL
Match: A0A3G5ANX5 (Cathepsin L isoform X1 OS=Tetranychus truncatus OX=93132 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.2e-04
Identity = 26/72 (36.11%), Postives = 42/72 (58.33%), Query Frame = 0

Query: 20 MAKAESSEYWESFMSWRSIRHKHYVGEKEILYRFEIFCETMKSIEYWNSKAGPGPNAARF 79
          +A A S  Y   + S+++  +K Y GE E  +R  +F   +K I+  N +A  G +  R 
Sbjct: 13 LAAAASLSYENEWESFKAKHNKVYAGESEESWRKSVFLNNLKKIKAHNERADNGEHTYRL 72

Query: 80 GLNEFSDLTWEE 92
          G+N+F+DLT+EE
Sbjct: 73 GVNKFADLTFEE 84

BLAST of Sed0012715 vs. TAIR 10
Match: AT4G35350.1 (xylem cysteine peptidase 1 )

HSP 1 Score: 47.0 bits (110), Expect = 1.7e-05
Identity = 26/62 (41.94%), Postives = 36/62 (58.06%), Query Frame = 0

Query: 30  ESFMSWRSIRHKHYVGEKEILYRFEIFCETMKSIEYWNSKAGPGPNAARFGLNEFSDLTW 89
           E F SW S   K Y   +E ++RFE+F E +  I+  N++     N+   GLNEF+DLT 
Sbjct: 49  ELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEI----NSYWLGLNEFADLTH 106

Query: 90  EE 92
           EE
Sbjct: 109 EE 106

BLAST of Sed0012715 vs. TAIR 10
Match: AT4G35350.2 (xylem cysteine peptidase 1 )

HSP 1 Score: 47.0 bits (110), Expect = 1.7e-05
Identity = 26/62 (41.94%), Postives = 36/62 (58.06%), Query Frame = 0

Query: 30  ESFMSWRSIRHKHYVGEKEILYRFEIFCETMKSIEYWNSKAGPGPNAARFGLNEFSDLTW 89
           E F SW S   K Y   +E ++RFE+F E +  I+  N++     N+   GLNEF+DLT 
Sbjct: 49  ELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEI----NSYWLGLNEFADLTH 106

Query: 90  EE 92
           EE
Sbjct: 109 EE 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038887495.15.7e-0839.81pro-cathepsin H-like [Benincasa hispida][more]
KAE8650303.12.2e-0439.53hypothetical protein Csa_010836 [Cucumis sativus][more]
XP_015791309.12.2e-0437.50cathepsin L1 [Tetranychus urticae][more]
Match NameE-valueIdentityDescription
O654932.3e-0441.94Cysteine protease XCP1 OS=Arabidopsis thaliana OX=3702 GN=XCP1 PE=1 SV=1[more]
P059948.9e-0443.33Papaya proteinase 4 OS=Carica papaya OX=3649 PE=1 SV=3[more]
Match NameE-valueIdentityDescription
T1KX031.1e-0437.50Uncharacterized protein OS=Tetranychus urticae OX=32264 GN=107368042 PE=3 SV=1[more]
A0A3G5ANX59.2e-0436.11Cathepsin L isoform X1 OS=Tetranychus truncatus OX=93132 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT4G35350.11.7e-0541.94xylem cysteine peptidase 1 [more]
AT4G35350.21.7e-0541.94xylem cysteine peptidase 1 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013201Cathepsin propeptide inhibitor domain (I29)SMARTSM00848Inhibitor_I29_2coord: 32..92
e-value: 1.4E-11
score: 54.5
IPR013201Cathepsin propeptide inhibitor domain (I29)PFAMPF08246Inhibitor_I29coord: 32..91
e-value: 7.2E-10
score: 39.2
NoneNo IPR availableGENE3D1.10.287.2250coord: 13..93
e-value: 6.7E-15
score: 56.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..159
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 26..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0012715.1Sed0012715.1mRNA