Sed0011835 (gene) Chayote v1

Overview


Name	Sed0011835
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Forkhead box protein G1
Location	LG01: 6458870 .. 6459464 (-)
RNA-Seq Expression	Sed0011835
Synteny	Sed0011835

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCCATCAAAAAATAATTGTGAATGAACAAAAACACATTTCAAATGATTCCGAACAGCCAGTAGCTATATAGAATTAAATAAACGAACAACTCAAATATATTATTAAGTTTGACAAATTCAAATTGTGGAAGTGAAAGAGAAAGACTTGAGAACCTGATATAATGAAACAGGGAATAATCCTGTGGAAGCAGTTGGTTAAACGTGCAGCCATTTCTCCCTCTTTCTTCATTTCTAATGGCCATCTCGTTCCTCCGCTCTCTCCGCCACCGCTTCTCCTTAGATCCGCCGCAGTGTCTGACCGCCGCCAAGTGGACGGCGCTATTGACGCTAACCGCCGCCGTGGCCTCCTTCGTTCCAGAGTTCATCTTCGCCAACGCGACCTCGCCTTCTTCCTCGTTTTCCAAATCCTGCCGCCGCGATGGCTACATCAGGATCCCGCTGGACCTTCCCGGACACCTTCTGTGCCTGCCGGCCGGAATTGTGAATCGATCCACCTTCGATTTCTTCGTTCCGGCTGTCTTTGCCGCTCTCGGTGTCGGCGTTTCGGCTTGCTTCGTTCGATCCTTGGGATTTTGAAACCCTCTCGATTTGAT

mRNA sequence

GTCCCATCAAAAAATAATTGTGAATGAACAAAAACACATTTCAAATGATTCCGAACAGCCAGTAGCTATATAGAATTAAATAAACGAACAACTCAAATATATTATTAAGTTTGACAAATTCAAATTGTGGAAGTGAAAGAGAAAGACTTGAGAACCTGATATAATGAAACAGGGAATAATCCTGTGGAAGCAGTTGGTTAAACGTGCAGCCATTTCTCCCTCTTTCTTCATTTCTAATGGCCATCTCGTTCCTCCGCTCTCTCCGCCACCGCTTCTCCTTAGATCCGCCGCAGTGTCTGACCGCCGCCAAGTGGACGGCGCTATTGACGCTAACCGCCGCCGTGGCCTCCTTCGTTCCAGAGTTCATCTTCGCCAACGCGACCTCGCCTTCTTCCTCGTTTTCCAAATCCTGCCGCCGCGATGGCTACATCAGGATCCCGCTGGACCTTCCCGGACACCTTCTGTGCCTGCCGGCCGGAATTGTGAATCGATCCACCTTCGATTTCTTCGTTCCGGCTGTCTTTGCCGCTCTCGGTGTCGGCGTTTCGGCTTGCTTCGTTCGATCCTTGGGATTTTGAAACCCTCTCGATTTGAT

Coding sequence (CDS)

ATGGCCATCTCGTTCCTCCGCTCTCTCCGCCACCGCTTCTCCTTAGATCCGCCGCAGTGTCTGACCGCCGCCAAGTGGACGGCGCTATTGACGCTAACCGCCGCCGTGGCCTCCTTCGTTCCAGAGTTCATCTTCGCCAACGCGACCTCGCCTTCTTCCTCGTTTTCCAAATCCTGCCGCCGCGATGGCTACATCAGGATCCCGCTGGACCTTCCCGGACACCTTCTGTGCCTGCCGGCCGGAATTGTGAATCGATCCACCTTCGATTTCTTCGTTCCGGCTGTCTTTGCCGCTCTCGGTGTCGGCGTTTCGGCTTGCTTCGTTCGATCCTTGGGATTTTGA

Protein sequence

MAISFLRSLRHRFSLDPPQCLTAAKWTALLTLTAAVASFVPEFIFANATSPSSSFSKSCRRDGYIRIPLDLPGHLLCLPAGIVNRSTFDFFVPAVFAALGVGVSACFVRSLGF

Homology

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BLAST of Sed0011835 vs. NCBI nr
Match: XP_008448381.1 (PREDICTED: uncharacterized protein LOC103490587 [Cucumis melo] >KAA0061944.1 forkhead box protein G1 [Cucumis melo var. makuwa] >TYK23985.1 forkhead box protein G1 [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 8.7e-43
Identity = 94/112 (83.93%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MAISFLRSLRHRFSLDPPQCLTAAKWTALLTLTAAVASFVPEFIFANATSPSSSFSKSCR 60
           M ISFL    HRFSLDPP C TAAKWTALLTLTAAVASF PEFIFANATS  SSFS+SCR
Sbjct: 1   MPISFL----HRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFSRSCR 60

Query: 61  RDGYIRIPLDLPGHLLCLPAGIVNRSTFDFFVPAVFAALGVGVSACFVRSLG 113
           RDGYIRIPLDLPG +LCLPA +VNRS+ DFFVP VFAALGVGVSACFVRSLG
Sbjct: 61  RDGYIRIPLDLPGDVLCLPANMVNRSSLDFFVPTVFAALGVGVSACFVRSLG 108

[Close]

BLAST of Sed0011835 vs. NCBI nr
Match: XP_038900397.1 (uncharacterized protein LOC120087630 [Benincasa hispida])

HSP 1 Score: 183.0 bits (463), Expect = 1.5e-42
Identity = 93/112 (83.04%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MAISFLRSLRHRFSLDPPQCLTAAKWTALLTLTAAVASFVPEFIFANATSPSSSFSKSCR 60
           M ISFL    HRFSLDPP C +AAKWTALL LTAAVASF PEFIF NATSP SSFSKSCR
Sbjct: 1   MPISFL----HRFSLDPPHCRSAAKWTALLALTAAVASFAPEFIFTNATSPHSSFSKSCR 60

Query: 61  RDGYIRIPLDLPGHLLCLPAGIVNRSTFDFFVPAVFAALGVGVSACFVRSLG 113
           RDGYIRIPLDLPG +LCLPA +VNRS+ DFFVP VFAALGVGVSACFVRSLG
Sbjct: 61  RDGYIRIPLDLPGDVLCLPAKMVNRSSLDFFVPTVFAALGVGVSACFVRSLG 108

[Close]

BLAST of Sed0011835 vs. NCBI nr
Match: KAE8647072.1 (hypothetical protein Csa_023019 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 1.1e-40
Identity = 91/113 (80.53%), Postives = 96/113 (84.96%), Query Frame = 0


Query: 1   MAISFLRSLRHRFSLDPPQCLTAAKWTALLTLTAAVASFVPEFIFANATSPSSSFSKSCR 60
           MAISFL    HRFSLDP  C +AAKWTALLTLTAAV SF PEFIF NATS  SSFS+SC 
Sbjct: 1   MAISFL----HRFSLDPQHCRSAAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCG 60

Query: 61  RDGYIRIPLDLPGHLLCLPAGIVNRSTFDFFVPAVFAALGVGVSACFVRSLGF 114
           RDGYIRIPLDLPG +LCLPA +VN S+FDFFVP VFAALGVGVSACFVRSLGF
Sbjct: 61  RDGYIRIPLDLPGDVLCLPANMVNWSSFDFFVPTVFAALGVGVSACFVRSLGF 109

[Close]

BLAST of Sed0011835 vs. NCBI nr
Match: XP_022148378.1 (uncharacterized protein LOC111017044 [Momordica charantia])

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-40
Identity = 92/112 (82.14%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 1   MAISFLRSLRHRFSLDPPQCLTAAKWTALLTLTAAVASFVPEFIFANATSPSSSFSKSCR 60
           MAISFL     RFSL PP CLTAAKWTALLTLTAAVASF PEFIF NATS SSSFSKSCR
Sbjct: 12  MAISFL-----RFSLYPPHCLTAAKWTALLTLTAAVASFAPEFIFTNATSLSSSFSKSCR 71

Query: 61  RDGYIRIPLDLPGHLLCLPAGIVNRSTFDFFVPAVFAALGVGVSACFVRSLG 113
           RDGYIRIPLDLPG +LCLPA +V RS+ DFFVP VFAALGVGVS CFVRS G
Sbjct: 72  RDGYIRIPLDLPGDVLCLPAKMVTRSSLDFFVPTVFAALGVGVSVCFVRSFG 118

[Close]

BLAST of Sed0011835 vs. NCBI nr
Match: XP_031742493.1 (uncharacterized protein LOC105435838 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 5.3e-40
Identity = 90/112 (80.36%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 1   MAISFLRSLRHRFSLDPPQCLTAAKWTALLTLTAAVASFVPEFIFANATSPSSSFSKSCR 60
           MAISFL    HRFSLDP  C +AAKWTALLTLTAAV SF PEFIF NATS  SSFS+SC 
Sbjct: 1   MAISFL----HRFSLDPQHCRSAAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCG 60

Query: 61  RDGYIRIPLDLPGHLLCLPAGIVNRSTFDFFVPAVFAALGVGVSACFVRSLG 113
           RDGYIRIPLDLPG +LCLPA +VN S+FDFFVP VFAALGVGVSACFVRSLG
Sbjct: 61  RDGYIRIPLDLPGDVLCLPANMVNWSSFDFFVPTVFAALGVGVSACFVRSLG 108

[Close]

BLAST of Sed0011835 vs. ExPASy TrEMBL
Match: A0A5A7V3R2 (Forkhead box protein G1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00490 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.2e-43
Identity = 94/112 (83.93%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MAISFLRSLRHRFSLDPPQCLTAAKWTALLTLTAAVASFVPEFIFANATSPSSSFSKSCR 60
           M ISFL    HRFSLDPP C TAAKWTALLTLTAAVASF PEFIFANATS  SSFS+SCR
Sbjct: 1   MPISFL----HRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFSRSCR 60

Query: 61  RDGYIRIPLDLPGHLLCLPAGIVNRSTFDFFVPAVFAALGVGVSACFVRSLG 113
           RDGYIRIPLDLPG +LCLPA +VNRS+ DFFVP VFAALGVGVSACFVRSLG
Sbjct: 61  RDGYIRIPLDLPGDVLCLPANMVNRSSLDFFVPTVFAALGVGVSACFVRSLG 108

[Close]

BLAST of Sed0011835 vs. ExPASy TrEMBL
Match: A0A1S3BKF6 (uncharacterized protein LOC103490587 OS=Cucumis melo OX=3656 GN=LOC103490587 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.2e-43
Identity = 94/112 (83.93%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MAISFLRSLRHRFSLDPPQCLTAAKWTALLTLTAAVASFVPEFIFANATSPSSSFSKSCR 60
           M ISFL    HRFSLDPP C TAAKWTALLTLTAAVASF PEFIFANATS  SSFS+SCR
Sbjct: 1   MPISFL----HRFSLDPPHCRTAAKWTALLTLTAAVASFAPEFIFANATSLHSSFSRSCR 60

Query: 61  RDGYIRIPLDLPGHLLCLPAGIVNRSTFDFFVPAVFAALGVGVSACFVRSLG 113
           RDGYIRIPLDLPG +LCLPA +VNRS+ DFFVP VFAALGVGVSACFVRSLG
Sbjct: 61  RDGYIRIPLDLPGDVLCLPANMVNRSSLDFFVPTVFAALGVGVSACFVRSLG 108

[Close]

BLAST of Sed0011835 vs. ExPASy TrEMBL
Match: A0A6J1D3X8 (uncharacterized protein LOC111017044 OS=Momordica charantia OX=3673 GN=LOC111017044 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.7e-41
Identity = 92/112 (82.14%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 1   MAISFLRSLRHRFSLDPPQCLTAAKWTALLTLTAAVASFVPEFIFANATSPSSSFSKSCR 60
           MAISFL     RFSL PP CLTAAKWTALLTLTAAVASF PEFIF NATS SSSFSKSCR
Sbjct: 12  MAISFL-----RFSLYPPHCLTAAKWTALLTLTAAVASFAPEFIFTNATSLSSSFSKSCR 71

Query: 61  RDGYIRIPLDLPGHLLCLPAGIVNRSTFDFFVPAVFAALGVGVSACFVRSLG 113
           RDGYIRIPLDLPG +LCLPA +V RS+ DFFVP VFAALGVGVS CFVRS G
Sbjct: 72  RDGYIRIPLDLPGDVLCLPAKMVTRSSLDFFVPTVFAALGVGVSVCFVRSFG 118

[Close]

BLAST of Sed0011835 vs. ExPASy TrEMBL
Match: A0A0A0KEV4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G303790 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.5e-40
Identity = 90/112 (80.36%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 1   MAISFLRSLRHRFSLDPPQCLTAAKWTALLTLTAAVASFVPEFIFANATSPSSSFSKSCR 60
           MAISFL    HRFSLDP  C +AAKWTALLTLTAAV SF PEFIF NATS  SSFS+SC 
Sbjct: 1   MAISFL----HRFSLDPQHCRSAAKWTALLTLTAAVTSFAPEFIFTNATSLHSSFSRSCG 60

Query: 61  RDGYIRIPLDLPGHLLCLPAGIVNRSTFDFFVPAVFAALGVGVSACFVRSLG 113
           RDGYIRIPLDLPG +LCLPA +VN S+FDFFVP VFAALGVGVSACFVRSLG
Sbjct: 61  RDGYIRIPLDLPGDVLCLPANMVNWSSFDFFVPTVFAALGVGVSACFVRSLG 108

[Close]

BLAST of Sed0011835 vs. ExPASy TrEMBL
Match: A0A2I4EV00 (uncharacterized protein LOC108992958 OS=Juglans regia OX=51240 GN=LOC108992958 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.5e-27
Identity = 67/112 (59.82%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 1   MAISFLRSLRHRFSLDPPQCLTAAKWTALLTLTAAVASFVPEFIFANATSPSSSFSKSCR 60
           M + FL +L H+ +   P  L AA WT LLTLT AVASF PE  F +A SPSSSFSKSC 
Sbjct: 1   MLLVFLHTLFHQVTSRWPLLLCAATWTVLLTLTVAVASFAPEIAFVSAISPSSSFSKSCH 60

Query: 61  RDGYIRIPLDLPGHLLCLPAGIVNRSTFDFFVPAVFAALGVGVSACFVRSLG 113
            DG++RIPLD P  ++C PA +V RS  DFF+P VFAAL V  SAC VRSLG
Sbjct: 61  ADGFVRIPLDNPMEVMCFPAHLVRRSKLDFFLPTVFAALVVACSACMVRSLG 112

[Close]

BLAST of Sed0011835 vs. TAIR 10
Match: AT2G37530.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07795.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 97.4 bits (241), Expect = 7.6e-21
Identity = 53/107 (49.53%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 8   SLRHRFSLDPPQCLTAAKWTALLTLTAAVASFVPEFIFANATSPSSS--FSKSCRRDGYI 67
           SL HRF+   P  +  A WT  LTLT A+ S  PEF F +A  PSSS  FS+ C     I
Sbjct: 8   SLTHRFAWRIPHFVYGATWTLFLTLTVAIISLAPEFAFVSAIFPSSSEVFSRRCGSYAAI 67

Query: 68  RIPLDLPGHLLCLPAGIVNRSTFDFFVPAVFAALGVGVSACFVRSLG 113
            +PLDLP  +LCLPA +  RS  D  VP VFAA+ V +SA  VR++G
Sbjct: 68  LVPLDLPSEVLCLPANLFRRSKMDLVVPPVFAAIVVALSAVVVRTMG 114

[Close]

BLAST of Sed0011835 vs. TAIR 10
Match: AT1G07795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28725.1); Has 38 Blast hits to 38 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-18
Identity = 50/107 (46.73%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 5   FLRSLRHRFSLDPPQCLTAAKWTALLTLTAAVASFVPEFIFANATSPSSSFSKSC-RRDG 64
           FLRS+  R+    P    AA WT LL  T AVASF PE  F       S+ S SC   DG
Sbjct: 12  FLRSVSDRW----PVIAQAATWTVLLMFTVAVASFAPEMAFV------STVSSSCGGGDG 71

Query: 65  YIRIPLDLPGHLLCLPAGIVNRSTFDFFVPAVFAALGVGVSACFVRS 111
           +++IP+D  G  +C+P+ +V RS FD FVP++FAA+ V  SAC +RS
Sbjct: 72  FVKIPMDFAGESICVPSNMVKRSRFDLFVPSIFAAVMVTASACLIRS 108

[Close]

BLAST of Sed0011835 vs. TAIR 10
Match: AT2G28725.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07795.1); Has 35 Blast hits to 35 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-13
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 24  AKWTALLTLTAAVASFVPEFIFANATSPSSSFSKSCRRDGYIRIPLDLPGHLLCLPAGIV 83
           A WT LL +T A+ASF PE  F +    SS        DG++RIP+DLPG +L LP+ +V
Sbjct: 19  ATWTILLMITVALASFAPEMAFVSKLKSSS--------DGFVRIPMDLPGEMLILPSEMV 78

Query: 84  NRSTFDFFVPAVFAALGVGVSACFVRS 111
             S  D F+P +FA + V  S   +RS
Sbjct: 79  KNSYLDVFLPTIFAGVMVIASVSLLRS 97

The following BLAST results are available for this feature:

BLAST of Sed0011835 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448381.1	8.7e-43	83.93	PREDICTED: uncharacterized protein LOC103490587 [Cucumis melo] >KAA0061944.1 for...	[more]
XP_038900397.1	1.5e-42	83.04	uncharacterized protein LOC120087630 [Benincasa hispida]	[more]
KAE8647072.1	1.1e-40	80.53	hypothetical protein Csa_023019 [Cucumis sativus]	[more]
XP_022148378.1	1.4e-40	82.14	uncharacterized protein LOC111017044 [Momordica charantia]	[more]
XP_031742493.1	5.3e-40	80.36	uncharacterized protein LOC105435838 [Cucumis sativus]	[more]

BLAST of Sed0011835 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0011835 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V3R2	4.2e-43	83.93	Forkhead box protein G1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BKF6	4.2e-43	83.93	uncharacterized protein LOC103490587 OS=Cucumis melo OX=3656 GN=LOC103490587 PE=...	[more]
A0A6J1D3X8	6.7e-41	82.14	uncharacterized protein LOC111017044 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A0A0KEV4	2.5e-40	80.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G303790 PE=4 SV=1	[more]
A0A2I4EV00	5.5e-27	59.82	uncharacterized protein LOC108992958 OS=Juglans regia OX=51240 GN=LOC108992958 P...	[more]

BLAST of Sed0011835 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37530.1	7.6e-21	49.53	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G07795.1	2.1e-18	46.73	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G28725.1	3.4e-13	43.68	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34658:SF5	BNACNNG38900D PROTEIN	coord: 2..112
None	No IPR available	PANTHER	PTHR34658	OS01G0151800 PROTEIN	coord: 2..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011835.1	Sed0011835.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005694	chromosome
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005488	binding