Sed0011418 (gene) Chayote v1

Overview


Name	Sed0011418
Type	gene
Organism	Sechium edule (Chayote v1)
Description	E3 ubiquitin-protein ligase arkadia-A, putative
Location	LG10: 744922 .. 745531 (-)
RNA-Seq Expression	Sed0011418
Synteny	Sed0011418

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCTTCCCAAAATTCTCCCCATTTTAACCGCACCTTCAACCAAAACCATCCCCCAATTCAAGCTCCTATTTCCATGGCTACCGTCAACAAAAACCCTAACCCTAACTCAAATTTTCCAATCCAAATCCAAATCAAAATCCCCAAACTCACTTCCAAACCTTCAATTCCACGAATCGCACAGAAATGGAGAATCAATCGCCACCAAAATCAACAACAAATACAACAACAGATCCTGATAATACTAACCTTCAAAACGCACCTTCATTGAAGCTCTCCCGGCACTCCTCCAGCGCCAGAGACTCCGACGCCGGCGACGACATCCGGTACACCAGCCTGAAGGACATTCTCGTCAACTTCCCGTCGTACGGCAGCGATCTCAACGATTTCAATCCCGATAACATTTCGATCCGAAACGACCTCGTGAAACGGGCGGCGTCGGCGTATATCCGATCGTCGGAGATTTTGATCAGCCGGAATCAGAGCAGCTCCGCCGGTTACGGCGGAGTCTGGCGCCGGCTTCGGATCAAACTCGCGGCCCTCCGTTCCCGGTTCTGCGATTGCGATTGTTTTCAACACATTTTTGGTTTCTTTCCTTGTGCCCTAGATTAG

mRNA sequence

ATCCTTCCCAAAATTCTCCCCATTTTAACCGCACCTTCAACCAAAACCATCCCCCAATTCAAGCTCCTATTTCCATGGCTACCGTCAACAAAAACCCTAACCCTAACTCAAATTTTCCAATCCAAATCCAAATCAAAATCCCCAAACTCACTTCCAAACCTTCAATTCCACGAATCGCACAGAAATGGAGAATCAATCGCCACCAAAATCAACAACAAATACAACAACAGATCCTGATAATACTAACCTTCAAAACGCACCTTCATTGAAGCTCTCCCGGCACTCCTCCAGCGCCAGAGACTCCGACGCCGGCGACGACATCCGGTACACCAGCCTGAAGGACATTCTCGTCAACTTCCCGTCGTACGGCAGCGATCTCAACGATTTCAATCCCGATAACATTTCGATCCGAAACGACCTCGTGAAACGGGCGGCGTCGGCGTATATCCGATCGTCGGAGATTTTGATCAGCCGGAATCAGAGCAGCTCCGCCGGTTACGGCGGAGTCTGGCGCCGGCTTCGGATCAAACTCGCGGCCCTCCGTTCCCGGTTCTGCGATTGCGATTGTTTTCAACACATTTTTGGTTTCTTTCCTTGTGCCCTAGATTAG

Coding sequence (CDS)

ATGGAGAATCAATCGCCACCAAAATCAACAACAAATACAACAACAGATCCTGATAATACTAACCTTCAAAACGCACCTTCATTGAAGCTCTCCCGGCACTCCTCCAGCGCCAGAGACTCCGACGCCGGCGACGACATCCGGTACACCAGCCTGAAGGACATTCTCGTCAACTTCCCGTCGTACGGCAGCGATCTCAACGATTTCAATCCCGATAACATTTCGATCCGAAACGACCTCGTGAAACGGGCGGCGTCGGCGTATATCCGATCGTCGGAGATTTTGATCAGCCGGAATCAGAGCAGCTCCGCCGGTTACGGCGGAGTCTGGCGCCGGCTTCGGATCAAACTCGCGGCCCTCCGTTCCCGGTTCTGCGATTGCGATTGTTTTCAACACATTTTTGGTTTCTTTCCTTGTGCCCTAGATTAG

Protein sequence

MENQSPPKSTTNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYGSDLNDFNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWRRLRIKLAALRSRFCDCDCFQHIFGFFPCALD

Homology

[Close]

BLAST of Sed0011418 vs. NCBI nr
Match: KAA0052530.1 (putative E3 ubiquitin-protein ligase arkadia-A [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 2.3e-37
Identity = 91/131 (69.47%), Postives = 105/131 (80.15%), Query Frame = 0


Query: 13  TTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNP 72
           TTT  D+  LQN PS KLSR+SSSARDSDAGDD+RYTSLKDIL+N PSY   +D N+FN 
Sbjct: 4   TTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNS 63

Query: 73  DNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWRRLRIKLAALRSRFCDCDCFQ 132
            NISIRN+LVKRAASAY++S+ IL+SRN+S   G+ G W RLRIKLAALRSR+  CDCF 
Sbjct: 64  SNISIRNELVKRAASAYLQSAAILVSRNES---GFVGFWERLRIKLAALRSRW--CDCFH 123

Query: 133 HIFGFFPCALD 142
            IFGFF  ALD
Sbjct: 124 RIFGFFSFALD 129

[Close]

BLAST of Sed0011418 vs. NCBI nr
Match: XP_022925985.1 (uncharacterized protein LOC111433238 [Cucurbita moschata] >KAG6581442.1 hypothetical protein SDJN03_21444, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.3 bits (373), Expect = 5.0e-32
Identity = 82/129 (63.57%), Postives = 98/129 (75.97%), Query Frame = 0


Query: 10  TTNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLND 69
           TT TT   D   LQN PS KLSR+SS+ RDSDAGDD+RYTSLKDIL+N PSY   ++ N+
Sbjct: 4   TTPTTAMDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNE 63

Query: 70  FNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWRRLRIKLAALRSRFCDCD 129
           FN  NI+IRN+LVKRAASAY++S+ IL+ RN+S   G+   W RLRIKLAALRSR+  CD
Sbjct: 64  FNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGF---WERLRIKLAALRSRW--CD 123

Query: 130 CFQHIFGFF 137
           CF   FGFF
Sbjct: 124 CFPRFFGFF 127

[Close]

BLAST of Sed0011418 vs. NCBI nr
Match: XP_022977989.1 (uncharacterized protein LOC111478115 [Cucurbita maxima])

HSP 1 Score: 148.3 bits (373), Expect = 5.0e-32
Identity = 82/129 (63.57%), Postives = 98/129 (75.97%), Query Frame = 0


Query: 10  TTNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLND 69
           TT T T  D   LQN PS KLSR+SS+ RDSDAGDD+RYTSLKDIL+N PSY   ++ N+
Sbjct: 4   TTPTATMDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNE 63

Query: 70  FNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWRRLRIKLAALRSRFCDCD 129
           FN  NI+IRN+LVKRAASAY++S+ IL+ RN+S   G+   W RLRIKLAALRSR+  CD
Sbjct: 64  FNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGF---WERLRIKLAALRSRW--CD 123

Query: 130 CFQHIFGFF 137
           CF   FGFF
Sbjct: 124 CFPRFFGFF 127

[Close]

BLAST of Sed0011418 vs. NCBI nr
Match: XP_023544918.1 (uncharacterized protein LOC111804374 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.3 bits (373), Expect = 5.0e-32
Identity = 82/129 (63.57%), Postives = 98/129 (75.97%), Query Frame = 0


Query: 10  TTNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLND 69
           TT TT   D   LQN PS KLSR+SS+ RDSDAGDD+RYTSLKDIL+N PSY   ++ N+
Sbjct: 59  TTPTTAMDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNE 118

Query: 70  FNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWRRLRIKLAALRSRFCDCD 129
           FN  NI+IRN+LVKRAASAY++S+ IL+ RN+S   G+   W RLRIKLAALRSR+  CD
Sbjct: 119 FNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGF---WERLRIKLAALRSRW--CD 178

Query: 130 CFQHIFGFF 137
           CF   FGFF
Sbjct: 179 CFPRFFGFF 182

[Close]

BLAST of Sed0011418 vs. NCBI nr
Match: KAE8647751.1 (hypothetical protein Csa_003767 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 8.6e-32
Identity = 78/111 (70.27%), Postives = 91/111 (81.98%), Query Frame = 0


Query: 18  DNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDNISI 77
           D   LQN PS KLSR+SSSARDSDA DD+RYTSLKDIL+N PSY   +D N+FN  NISI
Sbjct: 3   DPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISI 62

Query: 78  RNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWRRLRIKLAALRSRFCDC 127
           RN+LVKRAASAY++S+ IL+SRN+S   G+ G W RLRIKLAALRSR+CDC
Sbjct: 63  RNELVKRAASAYLQSAAILVSRNES---GFVGFWERLRIKLAALRSRWCDC 110

[Close]

BLAST of Sed0011418 vs. ExPASy TrEMBL
Match: A0A5A7UBK0 (Putative E3 ubiquitin-protein ligase arkadia-A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G001310 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.1e-37
Identity = 91/131 (69.47%), Postives = 105/131 (80.15%), Query Frame = 0


Query: 13  TTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNP 72
           TTT  D+  LQN PS KLSR+SSSARDSDAGDD+RYTSLKDIL+N PSY   +D N+FN 
Sbjct: 4   TTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNS 63

Query: 73  DNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWRRLRIKLAALRSRFCDCDCFQ 132
            NISIRN+LVKRAASAY++S+ IL+SRN+S   G+ G W RLRIKLAALRSR+  CDCF 
Sbjct: 64  SNISIRNELVKRAASAYLQSAAILVSRNES---GFVGFWERLRIKLAALRSRW--CDCFH 123

Query: 133 HIFGFFPCALD 142
            IFGFF  ALD
Sbjct: 124 RIFGFFSFALD 129

[Close]

BLAST of Sed0011418 vs. ExPASy TrEMBL
Match: A0A0A0KKP9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524030 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 9.6e-37
Identity = 91/133 (68.42%), Postives = 104/133 (78.20%), Query Frame = 0


Query: 11  TNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDF 70
           T TTT  D   LQN PS KLSR+SSSARDSDA DD+RYTSLKDIL+N PSY   +D N+F
Sbjct: 4   TATTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVNDFNEF 63

Query: 71  NPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWRRLRIKLAALRSRFCDCDC 130
           N  NISIRN+LVKRAASAY++S+ IL+SRN+S   G+ G W RLRIKLAALRSR+  CDC
Sbjct: 64  NSSNISIRNELVKRAASAYLQSAAILVSRNES---GFVGFWERLRIKLAALRSRW--CDC 123

Query: 131 FQHIFGFFPCALD 142
           F  IFGFF  ALD
Sbjct: 124 FHRIFGFFSFALD 131

[Close]

BLAST of Sed0011418 vs. ExPASy TrEMBL
Match: A0A6J1ISV4 (uncharacterized protein LOC111478115 OS=Cucurbita maxima OX=3661 GN=LOC111478115 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.4e-32
Identity = 82/129 (63.57%), Postives = 98/129 (75.97%), Query Frame = 0


Query: 10  TTNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLND 69
           TT T T  D   LQN PS KLSR+SS+ RDSDAGDD+RYTSLKDIL+N PSY   ++ N+
Sbjct: 4   TTPTATMDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNE 63

Query: 70  FNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWRRLRIKLAALRSRFCDCD 129
           FN  NI+IRN+LVKRAASAY++S+ IL+ RN+S   G+   W RLRIKLAALRSR+  CD
Sbjct: 64  FNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGF---WERLRIKLAALRSRW--CD 123

Query: 130 CFQHIFGFF 137
           CF   FGFF
Sbjct: 124 CFPRFFGFF 127

[Close]

BLAST of Sed0011418 vs. ExPASy TrEMBL
Match: A0A6J1EJR7 (uncharacterized protein LOC111433238 OS=Cucurbita moschata OX=3662 GN=LOC111433238 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.4e-32
Identity = 82/129 (63.57%), Postives = 98/129 (75.97%), Query Frame = 0


Query: 10  TTNTTTDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLND 69
           TT TT   D   LQN PS KLSR+SS+ RDSDAGDD+RYTSLKDIL+N PSY   ++ N+
Sbjct: 4   TTPTTAMDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNE 63

Query: 70  FNPDNISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWRRLRIKLAALRSRFCDCD 129
           FN  NI+IRN+LVKRAASAY++S+ IL+ RN+S   G+   W RLRIKLAALRSR+  CD
Sbjct: 64  FNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGF---WERLRIKLAALRSRW--CD 123

Query: 130 CFQHIFGFF 137
           CF   FGFF
Sbjct: 124 CFPRFFGFF 127

[Close]

BLAST of Sed0011418 vs. ExPASy TrEMBL
Match: A0A6J1CYB8 (uncharacterized protein LOC111015712 OS=Momordica charantia OX=3673 GN=LOC111015712 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 6.9e-27
Identity = 72/110 (65.45%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 15  TDPDNTNLQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYG--SDLNDFNPDN 74
           T  ++  LQN PS KLSR+SS ARDSDAGDD+RY SLKDIL+N PSY   +D NDFN  N
Sbjct: 3   TISESHKLQNIPSFKLSRYSSGARDSDAGDDLRYISLKDILLNSPSYSGVNDFNDFNSSN 62

Query: 75  ISIRNDLVKRAASAYIRSSEILISRNQSSSAGYGGVWRRLRIKLAALRSR 123
           ISIRN+LVKRAASAY++S+ IL+SRN+S    +   W RLR KLAALRSR
Sbjct: 63  ISIRNELVKRAASAYLQSAAILVSRNESCFVSF---WERLRNKLAALRSR 109

[Close]

BLAST of Sed0011418 vs. TAIR 10
Match: AT4G18395.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 4.3e-05
Identity = 30/90 (33.33%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 22 LQNAPSLKLSRHSSSARDSDAGDDIRYTSLKDILVNFPSYGS---------------DLN 81
          LQ +P + +S       D +  ++++YTSLKD++ +   +GS                L+
Sbjct: 2  LQKSPYIFIS-------DDNDQNNLQYTSLKDVISSSDGFGSLFCHPQYSVPSQDGFLLS 61

Query: 82 DFNPDNISIRNDLVKRAASAYIRSSEILIS 97
          + +  NI+I N+LVKRAAS Y++SS I+I+
Sbjct: 62 EMDSSNIAISNELVKRAASMYVQSSMIVIA 84

The following BLAST results are available for this feature:

BLAST of Sed0011418 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052530.1	2.3e-37	69.47	putative E3 ubiquitin-protein ligase arkadia-A [Cucumis melo var. makuwa]	[more]
XP_022925985.1	5.0e-32	63.57	uncharacterized protein LOC111433238 [Cucurbita moschata] >KAG6581442.1 hypothet...	[more]
XP_022977989.1	5.0e-32	63.57	uncharacterized protein LOC111478115 [Cucurbita maxima]	[more]
XP_023544918.1	5.0e-32	63.57	uncharacterized protein LOC111804374 [Cucurbita pepo subsp. pepo]	[more]
KAE8647751.1	8.6e-32	70.27	hypothetical protein Csa_003767 [Cucumis sativus]	[more]

BLAST of Sed0011418 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0011418 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UBK0	1.1e-37	69.47	Putative E3 ubiquitin-protein ligase arkadia-A OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0KKP9	9.6e-37	68.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524030 PE=4 SV=1	[more]
A0A6J1ISV4	2.4e-32	63.57	uncharacterized protein LOC111478115 OS=Cucurbita maxima OX=3661 GN=LOC111478115...	[more]
A0A6J1EJR7	2.4e-32	63.57	uncharacterized protein LOC111433238 OS=Cucurbita moschata OX=3662 GN=LOC1114332...	[more]
A0A6J1CYB8	6.9e-27	65.45	uncharacterized protein LOC111015712 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]

BLAST of Sed0011418 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18395.1	4.3e-05	33.33	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR34569:SF15	UBIQUITIN-PROTEIN LIGASE ARKADIA-A, PUTATIVE-RELATED	coord: 21..140
None	No IPR available	PANTHER	PTHR34569	EXPRESSED PROTEIN	coord: 21..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011418.1	Sed0011418.1	mRNA